Wall clock time and date at job start Tue Mar 31 2020 12:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38378 * 119.92401 * 2 1 4 4 C 1.38342 * 120.28798 * 179.97438 * 3 2 1 5 5 C 1.37980 * 120.14415 * 359.75533 * 4 3 2 6 6 N 1.48018 * 120.07380 * 180.25897 * 5 4 3 7 7 O 1.21806 * 119.99677 * 354.11355 * 6 5 4 8 8 O 1.21792 * 120.00319 * 174.11686 * 6 5 4 9 9 C 1.39552 * 119.85340 * 0.53995 * 5 4 3 10 10 C 1.47849 * 120.14491 * 179.71600 * 9 5 4 11 11 O 1.21546 * 119.99935 * 300.85618 * 10 9 5 12 12 N 1.34779 * 119.99575 * 120.84918 * 10 9 5 13 13 C 1.46924 * 120.63398 * 355.04105 * 12 10 9 14 14 C 1.53196 * 108.89194 * 233.55631 * 13 12 10 15 15 C 1.53069 * 109.29550 * 305.58064 * 14 13 12 16 16 C 1.53039 * 109.66074 * 61.15247 * 15 14 13 17 17 H 1.09000 * 109.49894 * 58.65042 * 16 15 14 18 18 C 1.50705 * 109.50057 * 178.74786 * 16 15 14 19 19 H 1.08001 * 119.99662 * 5.75938 * 18 16 15 20 20 C 1.37872 * 120.00377 * 185.75632 * 18 16 15 21 21 N 1.31515 * 120.00038 * 9.12207 * 20 18 16 22 22 Si 1.86797 * 120.00211 * 189.11869 * 20 18 16 23 23 H 1.48504 * 109.47279 * 94.98539 * 22 20 18 24 24 H 1.48502 * 109.47106 * 214.99074 * 22 20 18 25 25 H 1.48511 * 109.47105 * 334.98681 * 22 20 18 26 26 C 1.46929 * 120.62575 * 175.05999 * 12 10 9 27 27 C 1.37939 * 119.92638 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47444 * 269.97758 * 1 2 3 29 29 H 1.08999 * 109.46982 * 29.98512 * 1 2 3 30 30 H 1.09007 * 109.46802 * 149.98462 * 1 2 3 31 31 H 1.07996 * 119.85782 * 359.97438 * 3 2 1 32 32 H 1.07996 * 119.92571 * 180.02562 * 4 3 2 33 33 H 1.08996 * 109.58432 * 353.41789 * 13 12 10 34 34 H 1.09003 * 109.58592 * 113.70099 * 13 12 10 35 35 H 1.08998 * 109.49421 * 65.38603 * 14 13 12 36 36 H 1.08992 * 109.49567 * 185.48147 * 14 13 12 37 37 H 1.09003 * 109.34778 * 301.12669 * 15 14 13 38 38 H 1.09005 * 109.44419 * 181.23535 * 15 14 13 39 39 H 0.96995 * 120.00253 * 179.97438 * 21 20 18 40 40 H 1.08997 * 109.58982 * 246.15534 * 26 12 10 41 41 H 1.09004 * 109.58767 * 6.58598 * 26 12 10 42 42 H 1.08003 * 120.07751 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1993 0.0000 4 6 3.5807 1.2081 0.0005 5 6 4.2812 0.0193 0.0062 6 7 5.7613 0.0306 0.0125 7 8 6.3628 1.0843 -0.0954 8 8 6.3778 -1.0137 0.1256 9 6 3.5911 -1.1936 -0.0001 10 6 4.3352 -2.4712 -0.0004 11 8 5.1114 -2.7222 -0.9015 12 7 4.1529 -3.3574 0.9985 13 6 3.3022 -3.0241 2.1491 14 6 4.1006 -3.2472 3.4374 15 6 4.6499 -4.6759 3.4510 16 6 5.5861 -4.8790 2.2576 17 1 6.4012 -4.1569 2.3076 18 6 6.1487 -6.2767 2.2916 19 1 5.7970 -6.9824 3.0296 20 6 7.1123 -6.6544 1.3807 21 7 7.6700 -5.7534 0.6018 22 14 7.6258 -8.4458 1.2531 23 1 6.8504 -9.1073 0.1730 24 1 9.0755 -8.5242 0.9410 25 1 7.3596 -9.1303 2.5439 26 6 4.8015 -4.6752 0.9577 27 6 2.1952 -1.1955 -0.0005 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3633 -0.8899 -0.5141 31 1 1.6538 2.1325 -0.0004 32 1 4.1135 2.1475 0.0009 33 1 2.9947 -1.9803 2.0859 34 1 2.4208 -3.6653 2.1497 35 1 4.9293 -2.5405 3.4788 36 1 3.4502 -3.0968 4.2990 37 1 3.8217 -5.3818 3.3871 38 1 5.2000 -4.8444 4.3769 39 1 8.3481 -6.0190 -0.0388 40 1 4.0436 -5.4528 0.8627 41 1 5.4833 -4.7208 0.1084 42 1 1.6552 -2.1308 -0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397641406.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:32 Heat of formation + Delta-G solvation = -14.460533 kcal Electronic energy + Delta-G solvation = -27687.552800 eV Core-core repulsion = 23828.747018 eV Total energy + Delta-G solvation = -3858.805781 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.98047 -40.23966 -38.83288 -36.79494 -36.09174 -33.64983 -33.43669 -32.08999 -31.42327 -29.80339 -28.71141 -25.73531 -25.04686 -24.83313 -23.45145 -22.09689 -21.78121 -20.14231 -19.21077 -18.41430 -18.11102 -17.28137 -17.00293 -16.11671 -16.02758 -15.53916 -15.18641 -14.70772 -14.59374 -14.28641 -14.11657 -13.76234 -13.43395 -12.97062 -12.79172 -12.66978 -12.63182 -12.46491 -12.14512 -12.00075 -11.85816 -11.18975 -11.03370 -10.92546 -10.77442 -10.70088 -10.55287 -10.43030 -10.23756 -9.89399 -9.67927 -9.56724 -9.37298 -9.05066 -8.97029 -8.35309 -7.84523 -5.94853 -4.01525 -0.19947 0.54658 1.40476 1.58076 2.81170 3.09690 3.34824 3.42744 3.44481 3.47185 4.11679 4.21884 4.31087 4.47838 4.49056 4.64173 4.84057 5.01183 5.08850 5.17132 5.30516 5.35098 5.39112 5.41847 5.46172 5.55286 5.58631 5.81646 5.89522 6.05685 6.11486 6.27376 6.55755 6.60645 6.61180 6.80232 6.96098 7.04781 7.14272 7.61971 7.89901 7.92311 7.99229 8.08126 8.40773 8.65851 9.02959 9.62846 11.12145 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017196 B = 0.004302 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.904787 B = 6507.393602 C = 7277.960719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.041 4.041 3 C -0.114 4.114 4 C -0.055 4.055 5 C -0.020 4.020 6 N 0.016 4.984 7 O -0.183 6.183 8 O -0.095 6.095 9 C -0.042 4.042 10 C 0.544 3.456 11 O -0.498 6.498 12 N -0.592 5.592 13 C 0.107 3.893 14 C -0.134 4.134 15 C -0.109 4.109 16 C 0.038 3.962 17 H 0.041 0.959 18 C -0.526 4.526 19 H 0.058 0.942 20 C 0.067 3.933 21 N -0.870 5.870 22 Si 0.886 3.114 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 C 0.120 3.880 27 C -0.096 4.096 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.147 0.853 32 H 0.156 0.844 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.053 0.947 39 H 0.264 0.736 40 H 0.047 0.953 41 H 0.108 0.892 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.750 14.080 0.983 22.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.041 4.041 3 C -0.132 4.132 4 C -0.074 4.074 5 C -0.103 4.103 6 N 0.539 4.461 7 O -0.390 6.390 8 O -0.323 6.323 9 C -0.046 4.046 10 C 0.328 3.672 11 O -0.372 6.372 12 N -0.325 5.325 13 C -0.016 4.016 14 C -0.172 4.172 15 C -0.147 4.147 16 C 0.019 3.981 17 H 0.059 0.941 18 C -0.565 4.565 19 H 0.076 0.924 20 C -0.138 4.138 21 N -0.506 5.506 22 Si 0.714 3.286 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C 0.000 4.000 27 C -0.115 4.115 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.165 0.835 32 H 0.174 0.826 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.127 0.873 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -17.890 14.030 0.327 22.738 hybrid contribution 0.704 -0.845 -0.088 1.104 sum -17.185 13.185 0.238 21.662 Atomic orbital electron populations 1.20939 0.89342 1.03981 1.03499 1.20287 0.97395 0.92504 0.93907 1.21161 0.92399 0.98754 1.00932 1.20998 0.94637 0.97008 0.94752 1.21148 0.80589 0.95489 1.13099 1.43557 1.03024 1.00886 0.98678 1.94471 1.69251 1.20700 1.54609 1.94820 1.67644 1.20222 1.49635 1.20259 0.94637 0.93758 0.95988 1.17860 0.82401 0.82735 0.84197 1.90879 1.33702 1.76148 1.36477 1.48366 1.47976 1.17269 1.18873 1.21714 0.93472 0.99536 0.86891 1.21956 0.99515 1.00273 0.95487 1.21630 0.99301 0.92885 1.00854 1.18980 0.92969 0.97882 0.88237 0.94092 1.20995 1.22144 0.96776 1.16576 0.92420 1.25048 0.95608 0.97087 0.96020 1.70001 1.25776 1.32484 1.22352 0.86678 0.77836 0.85794 0.78291 1.20711 1.21244 1.19942 1.22303 0.95479 0.77528 1.04647 1.21252 0.90984 0.99438 0.99838 0.89793 0.90517 0.90441 0.83483 0.82647 0.91782 0.91625 0.92123 0.92125 0.93268 0.92776 0.92628 0.93433 0.87349 0.83246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.54 10.01 36.01 0.36 -0.18 16 2 C -0.04 -0.32 5.87 -104.68 -0.61 -0.94 16 3 C -0.11 -0.87 9.69 -39.49 -0.38 -1.26 16 4 C -0.05 -0.60 9.55 -39.64 -0.38 -0.98 16 5 C -0.02 -0.31 6.87 -79.55 -0.55 -0.86 16 6 N 0.02 0.32 4.45 34.16 0.15 0.47 16 7 O -0.18 -3.43 18.46 -29.46 -0.54 -3.97 16 8 O -0.10 -2.25 15.18 -36.92 -0.56 -2.81 16 9 C -0.04 -0.65 4.43 -104.97 -0.46 -1.12 16 10 C 0.54 11.12 5.57 -12.33 -0.07 11.05 16 11 O -0.50 -12.51 14.51 -18.24 -0.26 -12.77 16 12 N -0.59 -11.69 2.97 -173.88 -0.52 -12.20 16 13 C 0.11 1.62 5.84 -3.71 -0.02 1.60 16 14 C -0.13 -2.17 6.09 -26.59 -0.16 -2.34 16 15 C -0.11 -2.15 5.10 -26.68 -0.14 -2.28 16 16 C 0.04 0.95 2.12 -91.65 -0.19 0.76 16 17 H 0.04 1.17 8.08 -51.93 -0.42 0.75 16 18 C -0.53 -14.28 8.48 -34.44 -0.29 -14.57 16 19 H 0.06 1.53 7.77 -52.49 -0.41 1.12 16 20 C 0.07 1.86 5.25 -17.82 -0.09 1.77 16 21 N -0.87 -25.95 12.22 55.43 0.68 -25.27 16 22 Si 0.89 21.38 29.55 -169.99 -5.02 16.36 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 26 C 0.12 2.84 5.50 -3.71 -0.02 2.82 16 27 C -0.10 -1.05 7.67 -39.19 -0.30 -1.35 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.24 8.08 -51.93 -0.42 -0.18 16 30 H 0.08 0.32 8.08 -51.92 -0.42 -0.10 16 31 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 32 H 0.16 1.42 7.62 -52.49 -0.40 1.02 16 33 H 0.06 0.83 5.54 -51.93 -0.29 0.54 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.11 3.03 5.94 -51.93 -0.31 2.73 16 42 H 0.15 1.40 8.03 -52.48 -0.42 0.98 16 LS Contribution 349.20 15.07 5.26 5.26 Total: -1.00 -34.60 349.20 -9.73 -44.33 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -5.60 Total: -1.55 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -3.32 Total: -7.85 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.31 Total: -37.00 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -1.37 Total: -19.55 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.60 -9.73 -44.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397641406.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.873 kcal (2) G-P(sol) polarization free energy of solvation -34.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds