Wall clock time and date at job start Tue Mar 31 2020 12:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38378 * 119.92401 * 2 1 4 4 C 1.38342 * 120.28798 * 179.97438 * 3 2 1 5 5 C 1.37980 * 120.14415 * 359.75533 * 4 3 2 6 6 N 1.48018 * 120.07380 * 180.25897 * 5 4 3 7 7 O 1.21806 * 119.99677 * 354.11355 * 6 5 4 8 8 O 1.21792 * 120.00319 * 174.11686 * 6 5 4 9 9 C 1.39552 * 119.85340 * 0.53995 * 5 4 3 10 10 C 1.47849 * 120.14491 * 179.71600 * 9 5 4 11 11 O 1.21546 * 119.99935 * 300.85618 * 10 9 5 12 12 N 1.34779 * 119.99575 * 120.84918 * 10 9 5 13 13 C 1.46924 * 120.63398 * 355.04105 * 12 10 9 14 14 C 1.53196 * 108.89194 * 233.55631 * 13 12 10 15 15 C 1.53069 * 109.29550 * 305.58064 * 14 13 12 16 16 C 1.53039 * 109.66074 * 61.15247 * 15 14 13 17 17 H 1.09000 * 109.49894 * 58.65042 * 16 15 14 18 18 C 1.50705 * 109.50057 * 178.74786 * 16 15 14 19 19 H 1.08001 * 119.99662 * 5.75938 * 18 16 15 20 20 C 1.37872 * 120.00377 * 185.75632 * 18 16 15 21 21 N 1.31515 * 120.00038 * 9.12207 * 20 18 16 22 22 Si 1.86797 * 120.00211 * 189.11869 * 20 18 16 23 23 H 1.48504 * 109.47279 * 94.98539 * 22 20 18 24 24 H 1.48502 * 109.47106 * 214.99074 * 22 20 18 25 25 H 1.48511 * 109.47105 * 334.98681 * 22 20 18 26 26 C 1.46929 * 120.62575 * 175.05999 * 12 10 9 27 27 C 1.37939 * 119.92638 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47444 * 269.97758 * 1 2 3 29 29 H 1.08999 * 109.46982 * 29.98512 * 1 2 3 30 30 H 1.09007 * 109.46802 * 149.98462 * 1 2 3 31 31 H 1.07996 * 119.85782 * 359.97438 * 3 2 1 32 32 H 1.07996 * 119.92571 * 180.02562 * 4 3 2 33 33 H 1.08996 * 109.58432 * 353.41789 * 13 12 10 34 34 H 1.09003 * 109.58592 * 113.70099 * 13 12 10 35 35 H 1.08998 * 109.49421 * 65.38603 * 14 13 12 36 36 H 1.08992 * 109.49567 * 185.48147 * 14 13 12 37 37 H 1.09003 * 109.34778 * 301.12669 * 15 14 13 38 38 H 1.09005 * 109.44419 * 181.23535 * 15 14 13 39 39 H 0.96995 * 120.00253 * 179.97438 * 21 20 18 40 40 H 1.08997 * 109.58982 * 246.15534 * 26 12 10 41 41 H 1.09004 * 109.58767 * 6.58598 * 26 12 10 42 42 H 1.08003 * 120.07751 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1993 0.0000 4 6 3.5807 1.2081 0.0005 5 6 4.2812 0.0193 0.0062 6 7 5.7613 0.0306 0.0125 7 8 6.3628 1.0843 -0.0954 8 8 6.3778 -1.0137 0.1256 9 6 3.5911 -1.1936 -0.0001 10 6 4.3352 -2.4712 -0.0004 11 8 5.1114 -2.7222 -0.9015 12 7 4.1529 -3.3574 0.9985 13 6 3.3022 -3.0241 2.1491 14 6 4.1006 -3.2472 3.4374 15 6 4.6499 -4.6759 3.4510 16 6 5.5861 -4.8790 2.2576 17 1 6.4012 -4.1569 2.3076 18 6 6.1487 -6.2767 2.2916 19 1 5.7970 -6.9824 3.0296 20 6 7.1123 -6.6544 1.3807 21 7 7.6700 -5.7534 0.6018 22 14 7.6258 -8.4458 1.2531 23 1 6.8504 -9.1073 0.1730 24 1 9.0755 -8.5242 0.9410 25 1 7.3596 -9.1303 2.5439 26 6 4.8015 -4.6752 0.9577 27 6 2.1952 -1.1955 -0.0005 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3633 -0.8899 -0.5141 31 1 1.6538 2.1325 -0.0004 32 1 4.1135 2.1475 0.0009 33 1 2.9947 -1.9803 2.0859 34 1 2.4208 -3.6653 2.1497 35 1 4.9293 -2.5405 3.4788 36 1 3.4502 -3.0968 4.2990 37 1 3.8217 -5.3818 3.3871 38 1 5.2000 -4.8444 4.3769 39 1 8.3481 -6.0190 -0.0388 40 1 4.0436 -5.4528 0.8627 41 1 5.4833 -4.7208 0.1084 42 1 1.6552 -2.1308 -0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397641406.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:31 Heat of formation + Delta-G solvation = -36.446017 kcal Electronic energy + Delta-G solvation = -27688.506162 eV Core-core repulsion = 23828.747018 eV Total energy + Delta-G solvation = -3859.759143 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.34032 -41.53532 -40.04527 -38.42671 -37.58097 -35.36073 -34.44264 -33.69344 -32.62460 -31.54258 -29.59540 -27.25737 -26.80659 -25.99185 -24.57483 -23.62012 -23.01955 -21.63722 -20.66544 -19.82312 -19.41930 -18.71288 -18.54951 -18.00890 -17.19261 -16.89164 -16.55096 -15.95388 -15.72137 -15.60627 -15.31408 -14.90956 -14.80779 -14.58308 -14.34935 -13.91799 -13.61897 -13.37726 -13.28346 -13.12797 -12.88251 -12.78342 -12.73809 -12.62296 -12.36756 -12.29661 -12.25904 -12.19247 -11.91716 -11.67431 -11.28616 -10.94969 -10.84676 -10.53092 -10.39587 -10.32099 -9.51458 -8.12497 -6.27607 -1.40650 -0.30793 0.18117 0.37436 1.39203 1.40046 1.49805 1.51969 1.94406 2.22287 2.42014 3.11836 3.17659 3.26389 3.52746 3.73910 3.81293 3.92554 3.96415 4.07688 4.25102 4.42963 4.50341 4.58246 4.65768 4.69513 4.71575 4.74254 4.76598 4.89912 5.00874 5.08568 5.15299 5.20430 5.21664 5.23059 5.26386 5.49602 5.51047 5.59077 5.86345 5.92938 6.30294 6.37453 6.46228 6.87230 7.13118 7.42084 8.94041 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017196 B = 0.004302 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.904787 B = 6507.393602 C = 7277.960719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.012 4.012 3 C -0.088 4.088 4 C -0.046 4.046 5 C -0.052 4.052 6 N 0.023 4.977 7 O -0.136 6.136 8 O -0.229 6.229 9 C -0.068 4.068 10 C 0.538 3.462 11 O -0.565 6.565 12 N -0.597 5.597 13 C 0.104 3.896 14 C -0.128 4.128 15 C -0.102 4.102 16 C 0.037 3.963 17 H -0.020 1.020 18 C -0.537 4.537 19 H 0.067 0.933 20 C 0.009 3.991 21 N -0.916 5.916 22 Si 0.957 3.043 23 H -0.274 1.274 24 H -0.290 1.290 25 H -0.257 1.257 26 C 0.135 3.865 27 C -0.092 4.092 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.202 0.798 32 H 0.176 0.824 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.031 0.969 36 H 0.111 0.889 37 H 0.070 0.930 38 H 0.049 0.951 39 H 0.258 0.742 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.648 16.461 2.384 28.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.012 4.012 3 C -0.106 4.106 4 C -0.065 4.065 5 C -0.136 4.136 6 N 0.536 4.464 7 O -0.363 6.363 8 O -0.426 6.426 9 C -0.072 4.072 10 C 0.325 3.675 11 O -0.444 6.444 12 N -0.328 5.328 13 C -0.018 4.018 14 C -0.166 4.166 15 C -0.140 4.140 16 C 0.017 3.983 17 H -0.002 1.002 18 C -0.575 4.575 19 H 0.085 0.915 20 C -0.191 4.191 21 N -0.554 5.554 22 Si 0.782 3.218 23 H -0.200 1.200 24 H -0.216 1.216 25 H -0.181 1.181 26 C 0.013 3.987 27 C -0.110 4.110 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.101 0.899 31 H 0.219 0.781 32 H 0.194 0.806 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.050 0.950 36 H 0.129 0.871 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -23.790 16.167 1.807 28.820 hybrid contribution 2.325 -1.230 -0.529 2.683 sum -21.465 14.937 1.278 26.182 Atomic orbital electron populations 1.21128 0.85698 1.05649 1.05263 1.20818 0.99558 0.91055 0.89789 1.21823 0.90657 1.00880 0.97217 1.21459 0.96142 0.95582 0.93318 1.21443 0.77271 0.97580 1.17354 1.44191 1.05191 0.99960 0.97101 1.94357 1.70977 1.20263 1.50674 1.94873 1.69659 1.21182 1.56892 1.19917 0.96229 0.90856 1.00238 1.18640 0.81629 0.84172 0.83040 1.90817 1.36686 1.77807 1.39117 1.48352 1.48150 1.15869 1.20478 1.22088 0.93345 1.02221 0.84098 1.21933 0.99607 0.96831 0.98240 1.21502 0.98673 0.96058 0.97762 1.18890 0.92685 0.95249 0.91427 1.00179 1.21476 1.21842 0.97959 1.16235 0.91493 1.25967 0.95888 1.01529 0.95698 1.70228 1.26706 1.34962 1.23464 0.85562 0.77015 0.80251 0.78974 1.20004 1.21646 1.18089 1.21665 0.94898 0.80385 1.01776 1.21548 0.88524 1.01935 0.99043 0.87556 0.87953 0.89853 0.78069 0.80623 0.88864 0.87930 0.94963 0.87075 0.91183 0.93191 0.93304 0.92341 0.92935 0.81608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.14 10.01 71.24 0.71 0.57 16 2 C -0.01 -0.11 5.87 -19.90 -0.12 -0.23 16 3 C -0.09 -0.75 9.69 22.33 0.22 -0.54 16 4 C -0.05 -0.83 9.55 22.23 0.21 -0.62 16 5 C -0.05 -1.64 6.87 36.63 0.25 -1.39 16 6 N 0.02 0.96 4.45 -45.85 -0.20 0.75 16 7 O -0.14 -5.22 18.46 18.88 0.35 -4.88 16 8 O -0.23 -12.36 15.18 26.03 0.40 -11.96 16 9 C -0.07 -2.14 4.43 -20.09 -0.09 -2.23 16 10 C 0.54 23.95 5.57 86.79 0.48 24.44 16 11 O -0.57 -32.22 14.51 18.67 0.27 -31.95 16 12 N -0.60 -25.01 2.97 -822.30 -2.45 -27.46 16 13 C 0.10 2.98 5.84 86.36 0.50 3.49 16 14 C -0.13 -4.03 6.09 30.68 0.19 -3.84 16 15 C -0.10 -4.07 5.10 30.63 0.16 -3.91 16 16 C 0.04 1.96 2.12 -11.46 -0.02 1.94 16 17 H -0.02 -1.30 8.08 -2.39 -0.02 -1.32 16 18 C -0.54 -30.65 8.48 25.60 0.22 -30.44 16 19 H 0.07 3.61 7.77 -2.91 -0.02 3.59 16 20 C 0.01 0.53 5.25 84.65 0.44 0.98 16 21 N -0.92 -59.88 12.22 21.45 0.26 -59.62 16 22 Si 0.96 45.96 29.55 68.60 2.03 47.99 16 23 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 24 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 26 C 0.13 6.93 5.50 86.36 0.47 7.40 16 27 C -0.09 -1.69 7.67 22.53 0.17 -1.52 16 28 H 0.11 -0.15 8.14 -2.39 -0.02 -0.17 16 29 H 0.10 -0.26 8.08 -2.39 -0.02 -0.28 16 30 H 0.08 0.12 8.08 -2.38 -0.02 0.10 16 31 H 0.20 -0.25 8.06 -2.91 -0.02 -0.27 16 32 H 0.18 2.44 7.62 -2.91 -0.02 2.42 16 33 H 0.09 2.16 5.54 -2.39 -0.01 2.15 16 34 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 39 H 0.26 16.28 8.31 -92.71 -0.77 15.51 16 40 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 41 H 0.05 3.30 5.94 -2.39 -0.01 3.28 16 42 H 0.17 2.47 8.03 -2.91 -0.02 2.45 16 Total: -1.00 -94.25 349.20 5.49 -88.76 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: 1.04 Total: 4.27 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 3.80 Total: -5.91 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -2.39 Total: -86.32 kcal Atomic # 8 Polarization: -49.80 SS G_CDS: 1.01 Total: -48.79 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -94.25 5.49 -88.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397641406.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.313 kcal (2) G-P(sol) polarization free energy of solvation -94.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds