Wall clock time and date at job start Tue Mar 31 2020 12:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37978 * 120.07016 * 2 1 4 4 C 1.38343 * 120.14115 * 179.97438 * 3 2 1 5 5 C 1.38383 * 120.29193 * 0.02562 * 4 3 2 6 6 C 1.37932 * 120.14637 * 359.97438 * 5 4 3 7 7 N 1.48014 * 120.07243 * 180.02562 * 6 5 4 8 8 O 1.21800 * 120.00422 * 359.97438 * 7 6 5 9 9 O 1.21805 * 119.99987 * 180.02562 * 7 6 5 10 10 C 1.39554 * 120.07221 * 179.72543 * 2 1 3 11 11 C 1.47848 * 120.14552 * 359.97438 * 10 2 1 12 12 O 1.21547 * 119.99428 * 90.00311 * 11 10 2 13 13 N 1.34774 * 120.00108 * 269.99899 * 11 10 2 14 14 C 1.46930 * 120.63138 * 359.72576 * 13 11 10 15 15 C 1.53621 * 108.54461 * 126.36377 * 14 13 11 16 16 C 1.53043 * 109.23944 * 54.85649 * 15 14 13 17 17 C 1.53040 * 109.53684 * 298.50903 * 16 15 14 18 18 H 1.09000 * 109.50080 * 301.41193 * 17 16 15 19 19 C 1.50706 * 109.49596 * 181.32154 * 17 16 15 20 20 H 1.07993 * 119.99998 * 0.15435 * 19 17 16 21 21 C 1.37876 * 119.99928 * 180.16699 * 19 17 16 22 22 N 1.31515 * 120.00298 * 179.97438 * 21 19 17 23 23 Si 1.86797 * 120.00014 * 359.97438 * 21 19 17 24 24 H 1.48502 * 109.47398 * 90.00550 * 23 21 19 25 25 H 1.48502 * 109.47518 * 210.00597 * 23 21 19 26 26 H 1.48504 * 109.47339 * 330.00253 * 23 21 19 27 27 C 1.46924 * 120.62837 * 179.97438 * 13 11 10 28 28 H 1.09001 * 109.46953 * 89.99829 * 1 2 3 29 29 H 1.09000 * 109.47318 * 209.99427 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.00057 * 1 2 3 31 31 H 1.07997 * 119.92965 * 0.02562 * 3 2 1 32 32 H 1.08003 * 119.85045 * 180.02562 * 4 3 2 33 33 H 1.07999 * 119.92572 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.58350 * 246.20092 * 14 13 11 35 35 H 1.08997 * 109.58221 * 6.62219 * 14 13 11 36 36 H 1.08996 * 109.63282 * 294.86635 * 15 14 13 37 37 H 1.08994 * 109.45510 * 174.73510 * 15 14 13 38 38 H 1.09001 * 109.45738 * 178.48918 * 16 15 14 39 39 H 1.08993 * 109.46456 * 58.52913 * 16 15 14 40 40 H 0.96998 * 120.00148 * 179.97438 * 22 21 19 41 41 H 1.08993 * 109.58642 * 353.37517 * 27 13 11 42 42 H 1.08994 * 109.58846 * 113.65888 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5818 1.1958 0.0005 5 6 4.2813 0.0018 0.0005 6 6 3.6023 -1.1988 0.0005 7 7 4.3521 -2.4750 0.0011 8 8 5.5701 -2.4658 0.0011 9 8 3.7512 -3.5345 0.0006 10 6 2.2064 -1.2077 0.0058 11 6 1.4720 -2.4909 0.0125 12 8 1.1698 -3.0235 -1.0374 13 7 1.1377 -3.0699 1.1827 14 6 1.5014 -2.4411 2.4599 15 6 0.2314 -2.2953 3.3118 16 6 -0.4405 -3.6630 3.4538 17 6 -0.8449 -4.1805 2.0715 18 1 -1.5221 -3.4682 1.6001 19 6 -1.5354 -5.5123 2.2152 20 1 -1.6745 -5.9455 3.1947 21 6 -1.9892 -6.1779 1.0963 22 7 -2.5913 -7.3404 1.2216 23 14 -1.7489 -5.4285 -0.5978 24 1 -0.4511 -5.8814 -1.1599 25 1 -2.8532 -5.8607 -1.4916 26 1 -1.7513 -3.9474 -0.4889 27 6 0.4075 -4.3446 1.2055 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5138 31 1 1.6584 2.1294 0.0004 32 1 4.1183 2.1332 0.0010 33 1 5.3613 0.0100 0.0014 34 1 2.2252 -3.0668 2.9821 35 1 1.9328 -1.4577 2.2732 36 1 -0.4559 -1.6007 2.8287 37 1 0.4976 -1.9166 4.2985 38 1 -1.3276 -3.5685 4.0800 39 1 0.2559 -4.3636 3.9143 40 1 -2.9109 -7.8084 0.4345 41 1 0.1170 -4.6174 0.1910 42 1 1.0445 -5.1232 1.6250 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397696632.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:37 Heat of formation + Delta-G solvation = -7.432619 kcal Electronic energy + Delta-G solvation = -28303.638950 eV Core-core repulsion = 24445.137922 eV Total energy + Delta-G solvation = -3858.501028 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.31984 -40.55275 -38.98709 -37.04025 -36.49742 -33.73108 -33.44726 -32.32630 -31.82735 -30.52561 -27.90451 -26.85627 -25.31093 -25.21384 -23.14512 -22.15007 -22.06223 -20.21139 -19.15959 -18.71040 -18.56373 -17.65240 -17.36014 -16.73179 -16.28957 -16.21664 -15.47010 -14.59460 -14.38495 -14.23469 -14.07874 -13.96301 -13.70074 -13.14158 -12.94045 -12.87335 -12.70648 -12.53098 -12.43372 -12.20202 -12.00139 -11.54623 -11.43297 -11.13360 -11.09723 -11.09089 -10.67982 -10.43938 -10.12916 -10.00972 -9.83672 -9.73620 -9.42905 -9.24396 -9.11668 -8.60330 -8.14110 -6.10620 -4.12450 -0.40306 0.43061 1.16543 1.26927 2.67665 2.80131 3.17092 3.38993 3.46677 3.56172 3.95207 4.10152 4.25050 4.42241 4.44913 4.50242 4.66294 4.97935 5.02830 5.12413 5.20334 5.21769 5.29937 5.32495 5.39801 5.52796 5.68630 5.72021 5.75059 5.91015 5.97459 6.05551 6.13249 6.29582 6.32816 6.52921 6.59231 6.71734 6.77094 7.10562 7.39087 7.58669 7.68599 7.70866 8.31044 8.48518 8.92426 9.50749 11.01334 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016515 B = 0.005124 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.039539 B = 5463.196957 C = 5734.413707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.051 4.051 3 C -0.071 4.071 4 C -0.106 4.106 5 C -0.064 4.064 6 C -0.019 4.019 7 N 0.022 4.978 8 O -0.161 6.161 9 O -0.131 6.131 10 C -0.050 4.050 11 C 0.557 3.443 12 O -0.521 6.521 13 N -0.588 5.588 14 C 0.108 3.892 15 C -0.133 4.133 16 C -0.101 4.101 17 C 0.006 3.994 18 H 0.030 0.970 19 C -0.516 4.516 20 H 0.078 0.922 21 C 0.075 3.925 22 N -0.894 5.894 23 Si 0.876 3.124 24 H -0.270 1.270 25 H -0.295 1.295 26 H -0.265 1.265 27 C 0.106 3.894 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.157 0.843 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.265 0.735 41 H 0.081 0.919 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.282 21.844 0.863 24.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.052 4.052 3 C -0.089 4.089 4 C -0.125 4.125 5 C -0.083 4.083 6 C -0.102 4.102 7 N 0.543 4.457 8 O -0.375 6.375 9 O -0.350 6.350 10 C -0.054 4.054 11 C 0.342 3.658 12 O -0.398 6.398 13 N -0.319 5.319 14 C -0.016 4.016 15 C -0.171 4.171 16 C -0.139 4.139 17 C -0.014 4.014 18 H 0.048 0.952 19 C -0.554 4.554 20 H 0.096 0.904 21 C -0.128 4.128 22 N -0.532 5.532 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.223 1.223 26 H -0.190 1.190 27 C -0.014 4.014 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.166 0.834 32 H 0.168 0.832 33 H 0.175 0.825 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.677 21.987 0.224 24.444 hybrid contribution 0.519 -0.031 -1.026 1.151 sum 11.197 21.957 -0.803 24.660 Atomic orbital electron populations 1.21002 0.88667 1.04508 1.04141 1.20056 0.97543 0.90280 0.97365 1.21476 0.94330 0.98118 0.95014 1.21298 0.94112 0.97659 0.99420 1.21005 1.02135 0.89549 0.95588 1.21136 0.90818 0.84770 1.13487 1.43573 1.01202 1.02813 0.98113 1.94495 0.95386 1.94083 1.53515 1.94702 1.70059 1.18136 1.52094 1.20011 0.91067 0.96655 0.97705 1.17783 0.79672 0.83278 0.85063 1.90832 1.54571 1.63318 1.31044 1.48278 1.55286 1.24148 1.04234 1.21800 0.97851 0.96909 0.84997 1.22053 0.96367 0.99979 0.98737 1.21454 0.99626 0.93657 0.99118 1.19494 0.92004 0.98098 0.91768 0.95213 1.20923 1.36784 1.02349 0.95383 0.90371 1.25026 0.94211 0.94539 0.99018 1.69882 1.38777 1.14303 1.30192 0.87038 0.77552 0.80442 0.84365 1.19587 1.22284 1.18983 1.22711 0.94192 0.81897 1.02623 0.89562 0.90068 0.89886 0.83400 0.83184 0.82544 0.91179 0.91808 0.91932 0.91524 0.92005 0.92293 0.92460 0.90125 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 9.63 36.01 0.35 -1.01 16 2 C -0.05 -0.57 5.78 -104.22 -0.60 -1.17 16 3 C -0.07 -0.51 9.69 -39.64 -0.38 -0.89 16 4 C -0.11 -0.69 10.04 -39.49 -0.40 -1.08 16 5 C -0.06 -0.60 9.55 -39.64 -0.38 -0.98 16 6 C -0.02 -0.26 6.88 -79.55 -0.55 -0.81 16 7 N 0.02 0.37 4.45 34.15 0.15 0.52 16 8 O -0.16 -2.56 18.45 -29.46 -0.54 -3.11 16 9 O -0.13 -2.63 16.27 -33.37 -0.54 -3.17 16 10 C -0.05 -0.74 3.63 -104.97 -0.38 -1.12 16 11 C 0.56 10.88 3.00 -12.33 -0.04 10.84 16 12 O -0.52 -12.42 16.38 -3.94 -0.06 -12.48 16 13 N -0.59 -11.24 2.86 -173.65 -0.50 -11.74 16 14 C 0.11 1.60 6.37 -3.49 -0.02 1.58 16 15 C -0.13 -1.89 6.10 -26.39 -0.16 -2.05 16 16 C -0.10 -1.84 5.10 -26.69 -0.14 -1.98 16 17 C 0.01 0.13 1.84 -91.67 -0.17 -0.03 16 18 H 0.03 0.71 7.21 -51.93 -0.37 0.33 16 19 C -0.52 -14.17 9.15 -34.44 -0.31 -14.49 16 20 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 21 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 22 N -0.89 -27.37 13.96 55.43 0.77 -26.59 16 23 Si 0.88 23.22 24.32 -169.99 -4.13 19.09 16 24 H -0.27 -7.35 6.92 56.52 0.39 -6.96 16 25 H -0.30 -7.77 7.11 56.52 0.40 -7.36 16 26 H -0.26 -6.86 6.53 56.52 0.37 -6.49 16 27 C 0.11 2.41 5.10 -3.73 -0.02 2.39 16 28 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 1.11 7.07 -51.93 -0.37 0.74 16 30 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 31 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 32 H 0.15 0.42 8.06 -52.48 -0.42 0.00 16 33 H 0.16 1.17 7.61 -52.49 -0.40 0.77 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.06 0.81 6.23 -51.93 -0.32 0.49 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 41 H 0.08 2.07 2.32 -51.93 -0.12 1.95 16 42 H 0.07 1.68 8.14 -51.93 -0.42 1.26 16 LS Contribution 342.46 15.07 5.16 5.16 Total: -1.00 -35.18 342.46 -8.40 -43.58 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -5.41 Total: -2.54 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -3.30 Total: -8.73 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.43 Total: -37.81 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -1.15 Total: -18.76 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -4.13 Total: 19.09 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.18 -8.40 -43.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397696632.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.151 kcal (2) G-P(sol) polarization free energy of solvation -35.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds