Wall clock time and date at job start Tue Mar 31 2020 12:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37978 * 120.07016 * 2 1 4 4 C 1.38343 * 120.14115 * 179.97438 * 3 2 1 5 5 C 1.38383 * 120.29193 * 0.02562 * 4 3 2 6 6 C 1.37932 * 120.14637 * 359.97438 * 5 4 3 7 7 N 1.48014 * 120.07243 * 180.02562 * 6 5 4 8 8 O 1.21800 * 120.00422 * 359.97438 * 7 6 5 9 9 O 1.21805 * 119.99987 * 180.02562 * 7 6 5 10 10 C 1.39554 * 120.07221 * 179.72543 * 2 1 3 11 11 C 1.47848 * 120.14552 * 359.97438 * 10 2 1 12 12 O 1.21547 * 119.99428 * 90.00311 * 11 10 2 13 13 N 1.34774 * 120.00108 * 269.99899 * 11 10 2 14 14 C 1.46930 * 120.63138 * 359.72576 * 13 11 10 15 15 C 1.53621 * 108.54461 * 126.36377 * 14 13 11 16 16 C 1.53043 * 109.23944 * 54.85649 * 15 14 13 17 17 C 1.53040 * 109.53684 * 298.50903 * 16 15 14 18 18 H 1.09000 * 109.50080 * 301.41193 * 17 16 15 19 19 C 1.50706 * 109.49596 * 181.32154 * 17 16 15 20 20 H 1.07993 * 119.99998 * 0.15435 * 19 17 16 21 21 C 1.37876 * 119.99928 * 180.16699 * 19 17 16 22 22 N 1.31515 * 120.00298 * 179.97438 * 21 19 17 23 23 Si 1.86797 * 120.00014 * 359.97438 * 21 19 17 24 24 H 1.48502 * 109.47398 * 90.00550 * 23 21 19 25 25 H 1.48502 * 109.47518 * 210.00597 * 23 21 19 26 26 H 1.48504 * 109.47339 * 330.00253 * 23 21 19 27 27 C 1.46924 * 120.62837 * 179.97438 * 13 11 10 28 28 H 1.09001 * 109.46953 * 89.99829 * 1 2 3 29 29 H 1.09000 * 109.47318 * 209.99427 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.00057 * 1 2 3 31 31 H 1.07997 * 119.92965 * 0.02562 * 3 2 1 32 32 H 1.08003 * 119.85045 * 180.02562 * 4 3 2 33 33 H 1.07999 * 119.92572 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.58350 * 246.20092 * 14 13 11 35 35 H 1.08997 * 109.58221 * 6.62219 * 14 13 11 36 36 H 1.08996 * 109.63282 * 294.86635 * 15 14 13 37 37 H 1.08994 * 109.45510 * 174.73510 * 15 14 13 38 38 H 1.09001 * 109.45738 * 178.48918 * 16 15 14 39 39 H 1.08993 * 109.46456 * 58.52913 * 16 15 14 40 40 H 0.96998 * 120.00148 * 179.97438 * 22 21 19 41 41 H 1.08993 * 109.58642 * 353.37517 * 27 13 11 42 42 H 1.08994 * 109.58846 * 113.65888 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5818 1.1958 0.0005 5 6 4.2813 0.0018 0.0005 6 6 3.6023 -1.1988 0.0005 7 7 4.3521 -2.4750 0.0011 8 8 5.5701 -2.4658 0.0011 9 8 3.7512 -3.5345 0.0006 10 6 2.2064 -1.2077 0.0058 11 6 1.4720 -2.4909 0.0125 12 8 1.1698 -3.0235 -1.0374 13 7 1.1377 -3.0699 1.1827 14 6 1.5014 -2.4411 2.4599 15 6 0.2314 -2.2953 3.3118 16 6 -0.4405 -3.6630 3.4538 17 6 -0.8449 -4.1805 2.0715 18 1 -1.5221 -3.4682 1.6001 19 6 -1.5354 -5.5123 2.2152 20 1 -1.6745 -5.9455 3.1947 21 6 -1.9892 -6.1779 1.0963 22 7 -2.5913 -7.3404 1.2216 23 14 -1.7489 -5.4285 -0.5978 24 1 -0.4511 -5.8814 -1.1599 25 1 -2.8532 -5.8607 -1.4916 26 1 -1.7513 -3.9474 -0.4889 27 6 0.4075 -4.3446 1.2055 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5138 31 1 1.6584 2.1294 0.0004 32 1 4.1183 2.1332 0.0010 33 1 5.3613 0.0100 0.0014 34 1 2.2252 -3.0668 2.9821 35 1 1.9328 -1.4577 2.2732 36 1 -0.4559 -1.6007 2.8287 37 1 0.4976 -1.9166 4.2985 38 1 -1.3276 -3.5685 4.0800 39 1 0.2559 -4.3636 3.9143 40 1 -2.9109 -7.8084 0.4345 41 1 0.1170 -4.6174 0.1910 42 1 1.0445 -5.1232 1.6250 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397696632.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:36 Heat of formation + Delta-G solvation = -31.128619 kcal Electronic energy + Delta-G solvation = -28304.666485 eV Core-core repulsion = 24445.137922 eV Total energy + Delta-G solvation = -3859.528564 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.47636 -41.77226 -40.09856 -38.57668 -37.75701 -35.43339 -34.43485 -33.85266 -32.97864 -32.22021 -28.89120 -27.80428 -27.11878 -26.68267 -24.23929 -23.66384 -23.08009 -21.62259 -20.52316 -19.87887 -19.70022 -19.00252 -18.85118 -18.53258 -17.60669 -17.24156 -16.48893 -16.31999 -15.67735 -15.54166 -15.33773 -15.09318 -14.96053 -14.84629 -14.53977 -14.10458 -13.86302 -13.63215 -13.49478 -13.27036 -13.19395 -13.02933 -12.85027 -12.74272 -12.42260 -12.39778 -12.32715 -12.21218 -11.91226 -11.65848 -11.44268 -11.11291 -11.06430 -10.85345 -10.62682 -10.21821 -9.73554 -8.43146 -6.44308 -1.44073 -0.31159 0.14850 0.24894 1.16870 1.25089 1.29346 1.35717 1.78502 2.13984 2.16771 2.93802 3.02761 3.12527 3.56189 3.69526 3.78684 3.86427 3.90923 3.99879 4.04111 4.23716 4.30198 4.41219 4.45492 4.51150 4.54813 4.58244 4.71367 4.75973 4.89966 4.91600 4.96887 5.00368 5.04658 5.12038 5.13780 5.26960 5.43118 5.45884 5.56104 5.63192 6.21711 6.25085 6.30346 6.64244 6.89027 7.21174 8.72978 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016515 B = 0.005124 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.039539 B = 5463.196957 C = 5734.413707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.056 4.056 3 C -0.042 4.042 4 C -0.077 4.077 5 C -0.052 4.052 6 C -0.043 4.043 7 N 0.025 4.975 8 O -0.116 6.116 9 O -0.241 6.241 10 C -0.083 4.083 11 C 0.557 3.443 12 O -0.585 6.585 13 N -0.591 5.591 14 C 0.105 3.895 15 C -0.120 4.120 16 C -0.098 4.098 17 C 0.008 3.992 18 H 0.023 0.977 19 C -0.510 4.510 20 H 0.054 0.946 21 C 0.033 3.967 22 N -0.935 5.935 23 Si 0.930 3.070 24 H -0.293 1.293 25 H -0.289 1.289 26 H -0.262 1.262 27 C 0.113 3.887 28 H 0.078 0.922 29 H 0.043 0.957 30 H 0.127 0.873 31 H 0.200 0.800 32 H 0.207 0.793 33 H 0.181 0.819 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.267 0.733 41 H 0.048 0.952 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.350 28.615 1.845 31.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.057 4.057 3 C -0.059 4.059 4 C -0.095 4.095 5 C -0.071 4.071 6 C -0.127 4.127 7 N 0.539 4.461 8 O -0.348 6.348 9 O -0.435 6.435 10 C -0.088 4.088 11 C 0.345 3.655 12 O -0.466 6.466 13 N -0.321 5.321 14 C -0.017 4.017 15 C -0.158 4.158 16 C -0.136 4.136 17 C -0.011 4.011 18 H 0.041 0.959 19 C -0.548 4.548 20 H 0.073 0.927 21 C -0.166 4.166 22 N -0.575 5.575 23 Si 0.760 3.240 24 H -0.221 1.221 25 H -0.216 1.216 26 H -0.187 1.187 27 C -0.009 4.009 28 H 0.096 0.904 29 H 0.062 0.938 30 H 0.145 0.855 31 H 0.217 0.783 32 H 0.224 0.776 33 H 0.198 0.802 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.128 0.872 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.584 28.658 1.245 31.324 hybrid contribution 0.102 -1.866 -1.294 2.273 sum 12.686 26.792 -0.049 29.644 Atomic orbital electron populations 1.21053 0.88855 1.04780 1.03789 1.20290 0.97628 0.90299 0.97515 1.22078 0.94874 0.97990 0.90979 1.21999 0.93874 0.98250 0.95340 1.21546 1.03470 0.88482 0.93638 1.21384 0.90433 0.84045 1.16837 1.44080 1.01238 1.03759 0.96987 1.94406 0.96036 1.94348 1.49991 1.94739 1.70295 1.20288 1.58131 1.19711 0.91380 0.95194 1.02469 1.18503 0.78543 0.84607 0.83811 1.90764 1.57061 1.65612 1.33138 1.48226 1.54767 1.22877 1.06279 1.22075 0.98450 0.98104 0.83062 1.21996 0.95563 0.97245 1.00978 1.21388 1.00235 0.96213 0.95763 1.19413 0.91396 0.95464 0.94840 0.95926 1.21304 1.35673 1.03889 0.93962 0.92749 1.25553 0.94647 0.94920 1.01464 1.69967 1.40898 1.15663 1.30941 0.86183 0.76125 0.79908 0.81737 1.22086 1.21611 1.18658 1.22162 0.94453 0.83991 1.00335 0.90381 0.93821 0.85453 0.78319 0.77584 0.80200 0.91243 0.88651 0.90982 0.87152 0.91498 0.92731 0.92317 0.93391 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 9.63 71.24 0.69 -1.70 16 2 C -0.06 -1.02 5.78 -19.61 -0.11 -1.14 16 3 C -0.04 -0.28 9.69 22.23 0.22 -0.06 16 4 C -0.08 -0.35 10.04 22.33 0.22 -0.13 16 5 C -0.05 -0.69 9.55 22.23 0.21 -0.48 16 6 C -0.04 -1.12 6.88 36.63 0.25 -0.87 16 7 N 0.03 0.86 4.45 -45.85 -0.20 0.65 16 8 O -0.12 -3.56 18.45 18.89 0.35 -3.21 16 9 O -0.24 -10.53 16.27 22.62 0.37 -10.16 16 10 C -0.08 -2.38 3.63 -20.09 -0.07 -2.46 16 11 C 0.56 22.84 3.00 86.79 0.26 23.10 16 12 O -0.58 -30.26 16.38 4.99 0.08 -30.18 16 13 N -0.59 -23.62 2.86 -821.58 -2.35 -25.97 16 14 C 0.10 3.01 6.37 86.51 0.55 3.56 16 15 C -0.12 -3.12 6.10 30.82 0.19 -2.93 16 16 C -0.10 -3.57 5.10 30.62 0.16 -3.42 16 17 C 0.01 0.40 1.84 -11.47 -0.02 0.38 16 18 H 0.02 1.11 7.21 -2.39 -0.02 1.09 16 19 C -0.51 -29.46 9.15 25.60 0.23 -29.22 16 20 H 0.05 3.35 7.99 -2.91 -0.02 3.32 16 21 C 0.03 2.03 5.45 84.65 0.46 2.49 16 22 N -0.93 -60.03 13.96 21.45 0.30 -59.73 16 23 Si 0.93 51.74 24.32 68.60 1.67 53.41 16 24 H -0.29 -17.25 6.92 99.48 0.69 -16.56 16 25 H -0.29 -15.51 7.11 99.48 0.71 -14.80 16 26 H -0.26 -14.18 6.53 99.48 0.65 -13.53 16 27 C 0.11 5.51 5.10 86.35 0.44 5.95 16 28 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.04 1.15 7.07 -2.39 -0.02 1.14 16 30 H 0.13 1.14 8.09 -2.39 -0.02 1.12 16 31 H 0.20 -0.54 8.06 -2.91 -0.02 -0.56 16 32 H 0.21 -1.11 8.06 -2.91 -0.02 -1.13 16 33 H 0.18 1.56 7.61 -2.91 -0.02 1.53 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.10 2.17 6.23 -2.39 -0.01 2.16 16 36 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.27 16.25 8.31 -92.71 -0.77 15.48 16 41 H 0.05 2.67 2.32 -2.39 -0.01 2.67 16 42 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -90.64 342.46 4.85 -85.79 By element: Atomic # 1 Polarization: -4.66 SS G_CDS: 0.97 Total: -3.69 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 3.67 Total: -6.91 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -2.26 Total: -85.05 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: 0.80 Total: -43.55 kcal Atomic # 14 Polarization: 51.74 SS G_CDS: 1.67 Total: 53.41 kcal Total: -90.64 4.85 -85.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397696632.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.661 kcal (2) G-P(sol) polarization free energy of solvation -90.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds