Wall clock time and date at job start Tue Mar 31 2020 13:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37986 * 119.92677 * 2 1 4 4 C 1.39558 * 119.85241 * 180.27210 * 3 2 1 5 5 C 1.47841 * 120.14319 * 179.72437 * 4 3 2 6 6 O 1.21554 * 120.00105 * 230.69456 * 5 4 3 7 7 N 1.34775 * 119.99950 * 50.70032 * 5 4 3 8 8 C 1.46929 * 120.63136 * 356.20704 * 7 5 4 9 9 C 1.53197 * 108.77288 * 126.43801 * 8 7 5 10 10 C 1.53045 * 109.30993 * 54.63703 * 9 8 7 11 11 C 1.53041 * 109.53611 * 298.63288 * 10 9 8 12 12 H 1.09000 * 109.49968 * 301.37851 * 11 10 9 13 13 C 1.50703 * 109.49443 * 181.31949 * 11 10 9 14 14 H 1.08006 * 120.00103 * 0.06747 * 13 11 10 15 15 C 1.37869 * 120.00058 * 180.33919 * 13 11 10 16 16 N 1.31513 * 120.00028 * 359.72384 * 15 13 11 17 17 Si 1.86800 * 120.00145 * 179.72388 * 15 13 11 18 18 H 1.48504 * 109.47146 * 89.99907 * 17 15 13 19 19 H 1.48504 * 109.47439 * 209.99997 * 17 15 13 20 20 H 1.48504 * 109.47325 * 330.00328 * 17 15 13 21 21 C 1.46940 * 120.60385 * 176.23689 * 7 5 4 22 22 C 1.39602 * 119.70742 * 359.45755 * 4 3 2 23 23 C 1.37927 * 119.85514 * 0.26992 * 22 4 3 24 24 N 1.48019 * 119.92954 * 180.02562 * 23 22 4 25 25 O 1.21798 * 119.99247 * 0.02562 * 24 23 22 26 26 O 1.21790 * 120.00189 * 179.97438 * 24 23 22 27 27 C 1.38334 * 119.92806 * 179.70433 * 2 1 3 28 28 H 1.08994 * 109.47242 * 270.29554 * 1 2 3 29 29 H 1.09002 * 109.47364 * 30.29652 * 1 2 3 30 30 H 1.08998 * 109.47111 * 150.29262 * 1 2 3 31 31 H 1.08001 * 120.07438 * 0.02562 * 3 2 1 32 32 H 1.09001 * 109.58414 * 6.65432 * 8 7 5 33 33 H 1.08994 * 109.58706 * 246.22697 * 8 7 5 34 34 H 1.09006 * 109.49603 * 294.68720 * 9 8 7 35 35 H 1.08991 * 109.52284 * 174.60542 * 9 8 7 36 36 H 1.09000 * 109.45264 * 178.61454 * 10 9 8 37 37 H 1.08994 * 109.44706 * 58.65007 * 10 9 8 38 38 H 0.96999 * 119.99865 * 179.97438 * 16 15 13 39 39 H 1.09003 * 109.56047 * 113.76015 * 21 7 5 40 40 H 1.08997 * 109.61619 * 353.33179 * 21 7 5 41 41 H 1.07998 * 120.06865 * 180.29825 * 22 4 3 42 42 H 1.07995 * 119.85331 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1959 0.0000 4 6 3.5909 1.1941 -0.0057 5 6 4.3350 2.4716 -0.0119 6 8 5.2137 2.6592 -0.8306 7 7 4.0390 3.4282 0.8902 8 6 2.9255 3.2501 1.8320 9 6 3.4455 3.4658 3.2568 10 6 4.1305 4.8316 3.3442 11 6 5.3219 4.8690 2.3843 12 1 6.0211 4.0732 2.6410 13 6 6.0150 6.2026 2.4947 14 1 5.6440 6.9488 3.1817 15 6 7.1195 6.4721 1.7148 16 7 7.5714 5.5635 0.8783 17 14 7.9740 8.1280 1.8461 18 1 9.0335 8.0573 2.8843 19 1 8.5854 8.4748 0.5379 20 1 6.9827 9.1684 2.2205 21 6 4.8238 4.6690 0.9495 22 6 4.2812 -0.0193 0.0000 23 6 3.5810 -1.2076 0.0057 24 7 4.3112 -2.4951 0.0124 25 8 5.5292 -2.5043 0.0133 26 8 3.6942 -3.5452 0.0179 27 6 2.1971 -1.1989 0.0062 28 1 -0.3633 0.0053 1.0276 29 1 -0.3634 0.8873 -0.5184 30 1 -0.3633 -0.8926 -0.5093 31 1 1.6554 2.1312 0.0004 32 1 2.5252 2.2406 1.7380 33 1 2.1432 3.9773 1.6146 34 1 4.1622 2.6828 3.5049 35 1 2.6118 3.4313 3.9580 36 1 4.4798 4.9979 4.3632 37 1 3.4200 5.6120 3.0719 38 1 8.3482 5.7533 0.3293 39 1 4.1964 5.5119 0.6597 40 1 5.6759 4.5957 0.2738 41 1 5.3612 -0.0275 0.0005 42 1 1.6536 -2.1320 0.0106 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397715969.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:39 Heat of formation + Delta-G solvation = -18.066841 kcal Electronic energy + Delta-G solvation = -26808.487682 eV Core-core repulsion = 22949.525519 eV Total energy + Delta-G solvation = -3858.962163 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.30505 -40.56597 -38.84240 -36.90307 -36.65287 -33.71378 -33.57420 -32.35146 -31.68674 -29.85910 -27.68958 -26.79564 -25.62748 -25.15744 -23.13270 -22.26459 -21.83746 -20.15242 -19.19959 -18.73334 -18.30008 -17.63709 -16.96080 -16.81137 -16.21079 -15.92853 -15.48577 -14.74603 -14.35563 -14.19670 -13.96925 -13.87230 -13.61303 -12.96254 -12.84232 -12.74478 -12.70045 -12.51184 -12.26525 -12.12836 -11.96540 -11.65267 -11.29515 -11.22712 -11.10761 -11.02880 -10.62921 -10.55505 -10.34891 -10.05061 -9.83439 -9.57312 -9.38727 -9.23051 -9.05343 -8.52729 -7.98516 -6.08618 -4.17759 -0.35515 0.47392 1.13038 1.22584 2.67633 3.08923 3.26258 3.33828 3.35428 3.42370 4.04252 4.17228 4.36018 4.37118 4.45343 4.58027 4.73248 5.03243 5.08846 5.11227 5.13082 5.22015 5.30235 5.39202 5.48453 5.50723 5.66923 5.74169 5.79581 5.92496 6.01055 6.16059 6.27737 6.45984 6.50888 6.70086 6.83236 6.95727 7.05327 7.50049 7.53032 7.73495 7.85464 8.00936 8.26302 8.51516 8.86312 9.48773 10.96966 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017927 B = 0.003493 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.547566 B = 8013.458386 C = 8828.607393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 C -0.044 4.044 4 C -0.103 4.103 5 C 0.546 3.454 6 O -0.519 6.519 7 N -0.593 5.593 8 C 0.098 3.902 9 C -0.134 4.134 10 C -0.111 4.111 11 C 0.040 3.960 12 H 0.030 0.970 13 C -0.523 4.523 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.881 5.881 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.112 3.888 22 C -0.017 4.017 23 C -0.043 4.043 24 N 0.030 4.970 25 O -0.153 6.153 26 O -0.163 6.163 27 C -0.048 4.048 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.149 0.851 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.265 0.735 39 H 0.047 0.953 40 H 0.125 0.875 41 H 0.161 0.839 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.559 -10.555 -0.091 19.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.063 4.063 4 C -0.107 4.107 5 C 0.331 3.669 6 O -0.395 6.395 7 N -0.325 5.325 8 C -0.025 4.025 9 C -0.173 4.173 10 C -0.149 4.149 11 C 0.020 3.980 12 H 0.048 0.952 13 C -0.561 4.561 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.518 5.518 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.008 4.008 22 C -0.037 4.037 23 C -0.126 4.126 24 N 0.550 4.450 25 O -0.370 6.370 26 O -0.378 6.378 27 C -0.067 4.067 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.167 0.833 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.143 0.857 41 H 0.179 0.821 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -16.288 -9.827 -0.673 19.035 hybrid contribution 0.736 0.506 0.122 0.902 sum -15.552 -9.321 -0.551 18.139 Atomic orbital electron populations 1.20843 0.88803 1.03948 1.03447 1.19837 0.97360 0.91178 1.00569 1.21751 0.92845 0.99137 0.92558 1.20188 0.93896 0.94266 1.02321 1.17971 0.83506 0.82828 0.82546 1.90863 1.31335 1.79564 1.37745 1.48510 1.32288 1.19497 1.32171 1.21970 0.89352 1.00888 0.90340 1.21956 1.00152 1.00267 0.94885 1.21634 0.98677 0.93846 1.00699 1.18981 0.91801 0.97780 0.89394 0.95218 1.21055 1.12088 0.99781 1.23188 0.92251 1.25053 0.96846 0.96980 0.95095 1.69860 1.24395 1.33499 1.24074 0.86571 0.79792 0.84026 0.77497 1.20607 1.21118 1.19884 1.22444 0.95094 0.80021 1.03205 1.21027 1.02582 0.88618 0.91429 1.20930 0.92554 0.83591 1.15498 1.43558 1.01323 1.02643 0.97497 1.94592 0.95232 1.94168 1.53036 1.94509 1.69419 1.20318 1.53549 1.21008 0.90835 1.00332 0.94562 0.90074 0.90435 0.90626 0.83288 0.90858 0.91412 0.92094 0.92001 0.92795 0.93036 0.92496 0.93443 0.85707 0.82135 0.82756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.01 36.00 0.36 -0.19 16 2 C -0.09 -0.73 5.87 -104.68 -0.61 -1.34 16 3 C -0.04 -0.45 7.02 -39.18 -0.27 -0.72 16 4 C -0.10 -1.44 5.00 -104.97 -0.53 -1.97 16 5 C 0.55 10.20 7.23 -12.33 -0.09 10.11 16 6 O -0.52 -12.08 16.47 5.32 0.09 -11.99 16 7 N -0.59 -10.84 2.97 -173.87 -0.52 -11.36 16 8 C 0.10 1.33 5.38 -3.71 -0.02 1.31 16 9 C -0.13 -1.97 6.08 -26.61 -0.16 -2.14 16 10 C -0.11 -2.05 5.11 -26.69 -0.14 -2.18 16 11 C 0.04 0.93 2.25 -91.65 -0.21 0.72 16 12 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 13 C -0.52 -13.61 8.57 -34.44 -0.30 -13.90 16 14 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 15 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 16 N -0.88 -24.97 11.38 55.43 0.63 -24.34 16 17 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 C 0.11 2.54 5.39 -3.71 -0.02 2.52 16 22 C -0.02 -0.24 9.25 -39.19 -0.36 -0.60 16 23 C -0.04 -0.54 6.84 -80.00 -0.55 -1.09 16 24 N 0.03 0.43 4.45 33.93 0.15 0.58 16 25 O -0.15 -2.43 18.44 -29.46 -0.54 -2.98 16 26 O -0.16 -2.29 18.44 -29.46 -0.54 -2.83 16 27 C -0.05 -0.46 9.20 -39.49 -0.36 -0.82 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.31 8.09 -51.93 -0.42 -0.11 16 30 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 31 H 0.15 1.23 7.07 -52.49 -0.37 0.86 16 32 H 0.07 0.81 4.55 -51.93 -0.24 0.57 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.13 3.36 5.14 -51.93 -0.27 3.10 16 41 H 0.16 2.45 7.60 -52.49 -0.40 2.05 16 42 H 0.15 1.16 7.60 -52.49 -0.40 0.76 16 LS Contribution 350.83 15.07 5.29 5.29 Total: -1.00 -31.20 350.83 -9.25 -40.45 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -5.43 Total: 0.18 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -3.35 Total: -8.69 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.27 Total: -35.12 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -1.00 Total: -17.80 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.20 -9.25 -40.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397715969.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.386 kcal (2) G-P(sol) polarization free energy of solvation -31.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds