Wall clock time and date at job start Tue Mar 31 2020 13:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37986 * 119.92677 * 2 1 4 4 C 1.39558 * 119.85241 * 180.27210 * 3 2 1 5 5 C 1.47841 * 120.14319 * 179.72437 * 4 3 2 6 6 O 1.21554 * 120.00105 * 230.69456 * 5 4 3 7 7 N 1.34775 * 119.99950 * 50.70032 * 5 4 3 8 8 C 1.46929 * 120.63136 * 356.20704 * 7 5 4 9 9 C 1.53197 * 108.77288 * 126.43801 * 8 7 5 10 10 C 1.53045 * 109.30993 * 54.63703 * 9 8 7 11 11 C 1.53041 * 109.53611 * 298.63288 * 10 9 8 12 12 H 1.09000 * 109.49968 * 301.37851 * 11 10 9 13 13 C 1.50703 * 109.49443 * 181.31949 * 11 10 9 14 14 H 1.08006 * 120.00103 * 0.06747 * 13 11 10 15 15 C 1.37869 * 120.00058 * 180.33919 * 13 11 10 16 16 N 1.31513 * 120.00028 * 359.72384 * 15 13 11 17 17 Si 1.86800 * 120.00145 * 179.72388 * 15 13 11 18 18 H 1.48504 * 109.47146 * 89.99907 * 17 15 13 19 19 H 1.48504 * 109.47439 * 209.99997 * 17 15 13 20 20 H 1.48504 * 109.47325 * 330.00328 * 17 15 13 21 21 C 1.46940 * 120.60385 * 176.23689 * 7 5 4 22 22 C 1.39602 * 119.70742 * 359.45755 * 4 3 2 23 23 C 1.37927 * 119.85514 * 0.26992 * 22 4 3 24 24 N 1.48019 * 119.92954 * 180.02562 * 23 22 4 25 25 O 1.21798 * 119.99247 * 0.02562 * 24 23 22 26 26 O 1.21790 * 120.00189 * 179.97438 * 24 23 22 27 27 C 1.38334 * 119.92806 * 179.70433 * 2 1 3 28 28 H 1.08994 * 109.47242 * 270.29554 * 1 2 3 29 29 H 1.09002 * 109.47364 * 30.29652 * 1 2 3 30 30 H 1.08998 * 109.47111 * 150.29262 * 1 2 3 31 31 H 1.08001 * 120.07438 * 0.02562 * 3 2 1 32 32 H 1.09001 * 109.58414 * 6.65432 * 8 7 5 33 33 H 1.08994 * 109.58706 * 246.22697 * 8 7 5 34 34 H 1.09006 * 109.49603 * 294.68720 * 9 8 7 35 35 H 1.08991 * 109.52284 * 174.60542 * 9 8 7 36 36 H 1.09000 * 109.45264 * 178.61454 * 10 9 8 37 37 H 1.08994 * 109.44706 * 58.65007 * 10 9 8 38 38 H 0.96999 * 119.99865 * 179.97438 * 16 15 13 39 39 H 1.09003 * 109.56047 * 113.76015 * 21 7 5 40 40 H 1.08997 * 109.61619 * 353.33179 * 21 7 5 41 41 H 1.07998 * 120.06865 * 180.29825 * 22 4 3 42 42 H 1.07995 * 119.85331 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1959 0.0000 4 6 3.5909 1.1941 -0.0057 5 6 4.3350 2.4716 -0.0119 6 8 5.2137 2.6592 -0.8306 7 7 4.0390 3.4282 0.8902 8 6 2.9255 3.2501 1.8320 9 6 3.4455 3.4658 3.2568 10 6 4.1305 4.8316 3.3442 11 6 5.3219 4.8690 2.3843 12 1 6.0211 4.0732 2.6410 13 6 6.0150 6.2026 2.4947 14 1 5.6440 6.9488 3.1817 15 6 7.1195 6.4721 1.7148 16 7 7.5714 5.5635 0.8783 17 14 7.9740 8.1280 1.8461 18 1 9.0335 8.0573 2.8843 19 1 8.5854 8.4748 0.5379 20 1 6.9827 9.1684 2.2205 21 6 4.8238 4.6690 0.9495 22 6 4.2812 -0.0193 0.0000 23 6 3.5810 -1.2076 0.0057 24 7 4.3112 -2.4951 0.0124 25 8 5.5292 -2.5043 0.0133 26 8 3.6942 -3.5452 0.0179 27 6 2.1971 -1.1989 0.0062 28 1 -0.3633 0.0053 1.0276 29 1 -0.3634 0.8873 -0.5184 30 1 -0.3633 -0.8926 -0.5093 31 1 1.6554 2.1312 0.0004 32 1 2.5252 2.2406 1.7380 33 1 2.1432 3.9773 1.6146 34 1 4.1622 2.6828 3.5049 35 1 2.6118 3.4313 3.9580 36 1 4.4798 4.9979 4.3632 37 1 3.4200 5.6120 3.0719 38 1 8.3482 5.7533 0.3293 39 1 4.1964 5.5119 0.6597 40 1 5.6759 4.5957 0.2738 41 1 5.3612 -0.0275 0.0005 42 1 1.6536 -2.1320 0.0106 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397715969.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:38 Heat of formation + Delta-G solvation = -36.028317 kcal Electronic energy + Delta-G solvation = -26809.266550 eV Core-core repulsion = 22949.525519 eV Total energy + Delta-G solvation = -3859.741031 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.40038 -41.78081 -40.04189 -38.44870 -37.79010 -35.46157 -34.36450 -33.83687 -32.96109 -31.50338 -28.28180 -27.89573 -27.21981 -26.75846 -24.36926 -23.61651 -22.99495 -21.53293 -20.45695 -19.80187 -19.64238 -18.74517 -18.51886 -17.94268 -17.65563 -17.12402 -16.83871 -16.56254 -15.75561 -15.34482 -15.09734 -14.84157 -14.67401 -14.56272 -14.37193 -13.92385 -13.59509 -13.54001 -13.30073 -13.16469 -12.94016 -12.90606 -12.76460 -12.72375 -12.39779 -12.36459 -12.31650 -12.25438 -11.91815 -11.69834 -11.32166 -11.01326 -10.92250 -10.59211 -10.51806 -10.23021 -9.55767 -8.14702 -6.31860 -1.37660 -0.48417 0.12865 0.19576 1.38454 1.40313 1.44605 1.50873 1.88162 2.18223 2.39792 3.07679 3.15936 3.24259 3.49080 3.57733 3.69595 3.89711 3.97543 4.10790 4.19546 4.30607 4.42491 4.53611 4.59442 4.67958 4.71398 4.75064 4.80154 4.90599 4.91996 5.05346 5.13529 5.18693 5.19665 5.21952 5.30832 5.44469 5.46572 5.57033 5.85199 5.94905 6.27785 6.37916 6.44960 6.81125 7.04796 7.39250 8.88820 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017927 B = 0.003493 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.547566 B = 8013.458386 C = 8828.607393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.062 4.062 3 C -0.030 4.030 4 C -0.116 4.116 5 C 0.541 3.459 6 O -0.583 6.583 7 N -0.594 5.594 8 C 0.092 3.908 9 C -0.129 4.129 10 C -0.105 4.105 11 C 0.036 3.964 12 H -0.018 1.018 13 C -0.534 4.534 14 H 0.065 0.935 15 C 0.010 3.990 16 N -0.918 5.918 17 Si 0.957 3.043 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.259 1.259 21 C 0.125 3.875 22 C -0.037 4.037 23 C -0.051 4.051 24 N 0.030 4.970 25 O -0.224 6.224 26 O -0.123 6.123 27 C -0.031 4.031 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.178 0.822 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.042 0.958 35 H 0.110 0.890 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.259 0.741 39 H 0.049 0.951 40 H 0.075 0.925 41 H 0.128 0.872 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.057 -10.986 1.085 24.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.063 4.063 3 C -0.049 4.049 4 C -0.120 4.120 5 C 0.329 3.671 6 O -0.464 6.464 7 N -0.325 5.325 8 C -0.028 4.028 9 C -0.167 4.167 10 C -0.143 4.143 11 C 0.017 3.983 12 H 0.000 1.000 13 C -0.573 4.573 14 H 0.083 0.917 15 C -0.189 4.189 16 N -0.556 5.556 17 Si 0.783 3.217 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.183 1.183 21 C 0.003 3.997 22 C -0.057 4.057 23 C -0.134 4.134 24 N 0.547 4.453 25 O -0.424 6.424 26 O -0.352 6.352 27 C -0.050 4.050 28 H 0.121 0.879 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.196 0.804 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.061 0.939 35 H 0.128 0.872 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.146 0.854 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -21.692 -10.203 0.550 23.978 hybrid contribution 2.253 0.548 -0.219 2.329 sum -19.439 -9.654 0.331 21.707 Atomic orbital electron populations 1.21031 0.85058 1.05654 1.05259 1.20277 0.99383 0.89384 0.97288 1.22059 0.90569 1.01465 0.90781 1.19686 0.95432 0.91212 1.05676 1.18684 0.82875 0.84155 0.81428 1.90819 1.34306 1.80941 1.40347 1.48484 1.32953 1.18035 1.32978 1.22396 0.88155 1.03987 0.88309 1.21939 1.01026 0.96945 0.96775 1.21518 0.96954 0.96975 0.98814 1.18930 0.93079 0.94985 0.91305 0.99956 1.21522 1.12230 1.00924 1.22601 0.91690 1.25895 0.97859 1.00335 0.94860 1.70076 1.24754 1.35596 1.25206 0.85565 0.78861 0.80185 0.77135 1.20323 1.21488 1.18271 1.21816 0.94234 0.82188 1.01458 1.20762 1.01434 0.89947 0.93594 1.20974 0.93560 0.81857 1.17017 1.43814 1.01208 1.03286 0.96995 1.94624 0.96215 1.94556 1.56980 1.94448 1.69022 1.20973 1.50752 1.21513 0.88990 1.02461 0.91994 0.87915 0.88931 0.88904 0.80434 0.87456 0.88115 0.93861 0.87208 0.93056 0.91674 0.93154 0.93301 0.90659 0.85421 0.79591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.26 10.01 71.23 0.71 0.45 16 2 C -0.06 -0.68 5.87 -19.90 -0.12 -0.80 16 3 C -0.03 -0.49 7.02 22.53 0.16 -0.34 16 4 C -0.12 -3.24 5.00 -20.09 -0.10 -3.34 16 5 C 0.54 21.24 7.23 86.79 0.63 21.87 16 6 O -0.58 -29.82 16.47 -3.88 -0.06 -29.89 16 7 N -0.59 -22.05 2.97 -822.29 -2.44 -24.50 16 8 C 0.09 2.22 5.38 86.36 0.46 2.68 16 9 C -0.13 -3.43 6.08 30.68 0.19 -3.24 16 10 C -0.10 -3.76 5.11 30.62 0.16 -3.61 16 11 C 0.04 1.77 2.25 -11.46 -0.03 1.74 16 12 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 13 C -0.53 -28.70 8.57 25.60 0.22 -28.48 16 14 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 15 C 0.01 0.55 5.30 84.65 0.45 1.00 16 16 N -0.92 -55.64 11.38 21.44 0.24 -55.39 16 17 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 20 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 21 C 0.12 5.95 5.39 86.36 0.47 6.41 16 22 C -0.04 -1.11 9.25 22.53 0.21 -0.90 16 23 C -0.05 -1.25 6.84 36.34 0.25 -1.00 16 24 N 0.03 0.87 4.45 -46.55 -0.21 0.66 16 25 O -0.22 -7.73 18.44 18.89 0.35 -7.38 16 26 O -0.12 -3.22 18.44 18.90 0.35 -2.87 16 27 C -0.03 -0.45 9.20 22.33 0.21 -0.25 16 28 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.09 0.06 8.09 -2.39 -0.02 0.04 16 30 H 0.09 0.02 8.08 -2.39 -0.02 0.00 16 31 H 0.18 1.92 7.07 -2.91 -0.02 1.90 16 32 H 0.11 1.87 4.55 -2.39 -0.01 1.86 16 33 H 0.10 1.85 8.14 -2.39 -0.02 1.84 16 34 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 39 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.08 4.41 5.14 -2.39 -0.01 4.39 16 41 H 0.13 4.55 7.60 -2.91 -0.02 4.53 16 42 H 0.19 1.65 7.60 -2.91 -0.02 1.63 16 Total: -1.00 -78.93 350.83 5.16 -73.77 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 1.05 Total: 7.61 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 3.86 Total: -7.79 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -2.41 Total: -79.23 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: 0.63 Total: -40.14 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -78.93 5.16 -73.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397715969.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.746 kcal (2) G-P(sol) polarization free energy of solvation -78.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds