Wall clock time and date at job start Tue Mar 31 2020 13:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37982 * 119.93135 * 2 1 4 4 C 1.39550 * 119.85185 * 180.02562 * 3 2 1 5 5 C 1.47855 * 120.14218 * 180.02562 * 4 3 2 6 6 O 1.21544 * 119.99821 * 327.11652 * 5 4 3 7 7 N 1.34774 * 119.99876 * 147.11208 * 5 4 3 8 8 C 1.46928 * 120.62985 * 1.68280 * 7 5 4 9 9 C 1.52765 * 109.00837 * 233.58368 * 8 7 5 10 10 C 1.53042 * 109.38080 * 305.59125 * 9 8 7 11 11 C 1.53041 * 109.54098 * 61.23846 * 10 9 8 12 12 H 1.09001 * 109.49422 * 58.58472 * 11 10 9 13 13 C 1.50700 * 109.49768 * 178.68385 * 11 10 9 14 14 H 1.08005 * 120.00140 * 35.03459 * 13 11 10 15 15 C 1.37879 * 119.99743 * 215.03843 * 13 11 10 16 16 N 1.31515 * 119.99809 * 174.95747 * 15 13 11 17 17 Si 1.86794 * 120.00090 * 354.95247 * 15 13 11 18 18 H 1.48504 * 109.47309 * 94.84660 * 17 15 13 19 19 H 1.48506 * 109.47139 * 214.84637 * 17 15 13 20 20 H 1.48502 * 109.47225 * 334.84387 * 17 15 13 21 21 C 1.46921 * 120.63111 * 181.96349 * 7 5 4 22 22 C 1.39604 * 119.71741 * 359.73393 * 4 3 2 23 23 C 1.37934 * 119.84295 * 0.55756 * 22 4 3 24 24 N 1.48021 * 119.92269 * 179.71210 * 23 22 4 25 25 O 1.21803 * 119.99885 * 179.73261 * 24 23 22 26 26 O 1.21794 * 119.99965 * 359.44941 * 24 23 22 27 27 C 1.38335 * 119.92605 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46567 * 269.97790 * 1 2 3 29 29 H 1.09000 * 109.47048 * 29.97165 * 1 2 3 30 30 H 1.08994 * 109.47705 * 149.97971 * 1 2 3 31 31 H 1.07995 * 120.07259 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.58981 * 353.41528 * 8 7 5 33 33 H 1.08997 * 109.58793 * 113.84696 * 8 7 5 34 34 H 1.08996 * 109.56487 * 185.55739 * 9 8 7 35 35 H 1.09004 * 109.38601 * 65.51324 * 9 8 7 36 36 H 1.08999 * 109.46025 * 301.21601 * 10 9 8 37 37 H 1.09006 * 109.44831 * 181.25283 * 10 9 8 38 38 H 0.96997 * 120.00349 * 180.02562 * 16 15 13 39 39 H 1.09000 * 109.58732 * 246.15492 * 21 7 5 40 40 H 1.08998 * 109.58869 * 6.43549 * 21 7 5 41 41 H 1.07990 * 120.07964 * 180.27011 * 22 4 3 42 42 H 1.08000 * 119.85234 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1958 0.0000 4 6 3.5909 1.1938 -0.0005 5 6 4.3352 2.4714 0.0000 6 8 3.8770 3.4419 -0.5706 7 7 5.5215 2.5599 0.6334 8 6 6.1056 1.3860 1.2963 9 6 6.4314 1.7436 2.7453 10 6 7.3205 2.9890 2.7734 11 6 6.5740 4.1652 2.1399 12 1 5.6471 4.3438 2.6850 13 6 7.4378 5.3988 2.1973 14 1 8.5087 5.3138 2.0860 15 6 6.8609 6.6359 2.3917 16 7 7.6201 7.6993 2.5410 17 14 5.0010 6.8014 2.4431 18 1 4.5386 6.7541 3.8536 19 1 4.6023 8.0961 1.8347 20 1 4.3835 5.6858 1.6820 21 6 6.2524 3.8336 0.6794 22 6 4.2813 -0.0195 0.0046 23 6 3.5809 -1.2078 -0.0016 24 7 4.3111 -2.4953 -0.0026 25 8 3.6940 -3.5455 -0.0031 26 8 5.5290 -2.5047 -0.0082 27 6 2.1971 -1.1989 -0.0005 28 1 -0.3632 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3634 -0.8897 -0.5141 31 1 1.6555 2.1311 -0.0004 32 1 5.3919 0.5623 1.2764 33 1 7.0200 1.0925 0.7809 34 1 6.9548 0.9123 3.2176 35 1 5.5061 1.9449 3.2852 36 1 8.2350 2.7951 2.2130 37 1 7.5720 3.2322 3.8058 38 1 7.2144 8.5696 2.6782 39 1 7.1791 3.7438 0.1125 40 1 5.6367 4.6240 0.2501 41 1 5.3612 -0.0278 0.0086 42 1 1.6535 -2.1321 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397715973.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:43 Heat of formation + Delta-G solvation = -0.737482 kcal Electronic energy + Delta-G solvation = -26999.544911 eV Core-core repulsion = 23141.334206 eV Total energy + Delta-G solvation = -3858.210705 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.47465 -40.84152 -39.05819 -37.16621 -36.81258 -34.33368 -33.23399 -32.36026 -31.90417 -30.61856 -27.87677 -26.93875 -25.86413 -25.31110 -23.22307 -22.40374 -21.91652 -20.36955 -19.28922 -18.93790 -18.38932 -17.78716 -17.23251 -17.08695 -16.59389 -16.23829 -15.52663 -15.01301 -14.46722 -14.35813 -14.12854 -13.89756 -13.67876 -13.24373 -12.95490 -12.84527 -12.66725 -12.59616 -12.53275 -12.36653 -12.27552 -11.80928 -11.44077 -11.36934 -11.28721 -11.07423 -10.75286 -10.67489 -10.24033 -9.99628 -9.88411 -9.79945 -9.57811 -9.34278 -9.16025 -8.72861 -8.26475 -6.19492 -4.20921 -0.48174 0.23502 1.00392 1.08334 2.45096 2.96495 3.22437 3.23668 3.34071 3.41477 3.85990 3.98918 4.29433 4.34303 4.36890 4.41029 4.54437 4.84089 4.94566 5.00214 5.07906 5.10998 5.17157 5.23270 5.39650 5.44400 5.51246 5.64950 5.70200 5.81202 5.87223 6.04175 6.12655 6.14428 6.28509 6.46298 6.53668 6.66352 6.70078 7.15129 7.24033 7.38507 7.57546 7.62968 8.19306 8.39797 8.85914 9.43319 10.92905 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017591 B = 0.003982 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.366558 B = 7030.487814 C = 8156.305909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.088 4.088 3 C -0.018 4.018 4 C -0.112 4.112 5 C 0.549 3.451 6 O -0.531 6.531 7 N -0.594 5.594 8 C 0.078 3.922 9 C -0.138 4.138 10 C -0.105 4.105 11 C 0.007 3.993 12 H 0.035 0.965 13 C -0.516 4.516 14 H 0.076 0.924 15 C 0.077 3.923 16 N -0.893 5.893 17 Si 0.868 3.132 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.256 1.256 21 C 0.110 3.890 22 C -0.048 4.048 23 C -0.048 4.048 24 N 0.030 4.970 25 O -0.160 6.160 26 O -0.155 6.155 27 C -0.044 4.044 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.153 0.847 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.266 0.734 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.176 0.824 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.520 -18.411 -3.687 22.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.089 4.089 3 C -0.037 4.037 4 C -0.116 4.116 5 C 0.335 3.665 6 O -0.409 6.409 7 N -0.325 5.325 8 C -0.044 4.044 9 C -0.176 4.176 10 C -0.142 4.142 11 C -0.013 4.013 12 H 0.053 0.947 13 C -0.554 4.554 14 H 0.095 0.905 15 C -0.126 4.126 16 N -0.530 5.530 17 Si 0.695 3.305 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.180 1.180 21 C -0.010 4.010 22 C -0.067 4.067 23 C -0.131 4.131 24 N 0.550 4.450 25 O -0.376 6.376 26 O -0.372 6.372 27 C -0.063 4.063 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.171 0.829 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.193 0.807 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -13.074 -17.037 -3.956 21.837 hybrid contribution -0.632 -0.128 0.126 0.657 sum -13.706 -17.165 -3.830 22.297 Atomic orbital electron populations 1.20860 0.88678 1.04075 1.03534 1.19895 0.97543 0.91115 1.00300 1.21645 0.92582 0.99305 0.90176 1.20149 0.94471 0.93254 1.03699 1.17979 0.81471 0.86822 0.80224 1.90809 1.67905 1.37530 1.44655 1.48487 1.19520 1.13071 1.51398 1.22531 0.98950 0.88134 0.94831 1.21947 1.01027 0.99863 0.94772 1.21581 0.97749 0.93362 1.01549 1.19476 0.96504 0.94767 0.90518 0.94712 1.20877 0.94967 0.89060 1.50455 0.90542 1.25070 0.97847 0.95854 0.93872 1.69896 1.35484 0.99333 1.48266 0.86973 0.86544 0.78336 0.78624 1.20480 1.21225 1.17978 1.22665 0.94922 0.81965 1.01442 1.21740 1.02981 0.89316 0.92651 1.20949 0.92647 0.83601 1.15896 1.43548 1.01266 1.02646 0.97508 1.94533 1.69406 1.20189 1.53471 1.94569 0.95298 1.94149 1.53153 1.21064 0.90921 1.00400 0.93913 0.90036 0.90268 0.90530 0.82942 0.89311 0.90341 0.91273 0.92147 0.92493 0.91906 0.92456 0.91475 0.89606 0.80679 0.82622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.01 36.00 0.36 -0.22 16 2 C -0.09 -0.71 5.87 -104.68 -0.61 -1.32 16 3 C -0.02 -0.19 9.25 -39.19 -0.36 -0.55 16 4 C -0.11 -1.43 5.53 -104.96 -0.58 -2.01 16 5 C 0.55 9.30 7.45 -12.33 -0.09 9.20 16 6 O -0.53 -10.89 16.19 5.33 0.09 -10.80 16 7 N -0.59 -10.09 2.98 -174.15 -0.52 -10.61 16 8 C 0.08 1.04 4.87 -3.93 -0.02 1.02 16 9 C -0.14 -1.96 6.07 -26.83 -0.16 -2.13 16 10 C -0.10 -1.88 5.15 -26.69 -0.14 -2.02 16 11 C 0.01 0.15 1.79 -91.65 -0.16 -0.01 16 12 H 0.03 0.80 5.60 -51.93 -0.29 0.51 16 13 C -0.52 -13.65 8.86 -34.44 -0.31 -13.96 16 14 H 0.08 2.19 8.06 -52.48 -0.42 1.76 16 15 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 16 N -0.89 -26.52 13.96 55.43 0.77 -25.75 16 17 Si 0.87 21.29 26.63 -169.99 -4.53 16.77 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.26 -6.22 5.99 56.52 0.34 -5.88 16 21 C 0.11 2.25 5.51 -3.72 -0.02 2.23 16 22 C -0.05 -0.54 6.95 -39.18 -0.27 -0.82 16 23 C -0.05 -0.52 6.85 -80.00 -0.55 -1.07 16 24 N 0.03 0.37 4.45 33.94 0.15 0.52 16 25 O -0.16 -2.01 18.44 -29.46 -0.54 -2.55 16 26 O -0.15 -2.05 18.44 -29.46 -0.54 -2.59 16 27 C -0.04 -0.38 9.20 -39.49 -0.36 -0.74 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.36 8.08 -51.93 -0.42 -0.06 16 30 H 0.08 0.29 8.08 -51.93 -0.42 -0.13 16 31 H 0.15 1.53 7.97 -52.49 -0.42 1.12 16 32 H 0.09 1.03 3.55 -53.42 -0.19 0.84 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.09 1.98 5.91 -51.93 -0.31 1.67 16 41 H 0.18 1.91 4.86 -52.49 -0.26 1.66 16 42 H 0.16 1.04 7.60 -52.49 -0.40 0.64 16 LS Contribution 345.13 15.07 5.20 5.20 Total: -1.00 -31.81 345.13 -8.58 -40.39 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -5.28 Total: -0.25 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -3.38 Total: -10.34 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.41 Total: -35.83 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -1.00 Total: -15.94 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.53 Total: 16.77 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.81 -8.58 -40.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397715973.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.653 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds