Wall clock time and date at job start Tue Mar 31 2020 13:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37982 * 119.93135 * 2 1 4 4 C 1.39550 * 119.85185 * 180.02562 * 3 2 1 5 5 C 1.47855 * 120.14218 * 180.02562 * 4 3 2 6 6 O 1.21544 * 119.99821 * 327.11652 * 5 4 3 7 7 N 1.34774 * 119.99876 * 147.11208 * 5 4 3 8 8 C 1.46928 * 120.62985 * 1.68280 * 7 5 4 9 9 C 1.52765 * 109.00837 * 233.58368 * 8 7 5 10 10 C 1.53042 * 109.38080 * 305.59125 * 9 8 7 11 11 C 1.53041 * 109.54098 * 61.23846 * 10 9 8 12 12 H 1.09001 * 109.49422 * 58.58472 * 11 10 9 13 13 C 1.50700 * 109.49768 * 178.68385 * 11 10 9 14 14 H 1.08005 * 120.00140 * 35.03459 * 13 11 10 15 15 C 1.37879 * 119.99743 * 215.03843 * 13 11 10 16 16 N 1.31515 * 119.99809 * 174.95747 * 15 13 11 17 17 Si 1.86794 * 120.00090 * 354.95247 * 15 13 11 18 18 H 1.48504 * 109.47309 * 94.84660 * 17 15 13 19 19 H 1.48506 * 109.47139 * 214.84637 * 17 15 13 20 20 H 1.48502 * 109.47225 * 334.84387 * 17 15 13 21 21 C 1.46921 * 120.63111 * 181.96349 * 7 5 4 22 22 C 1.39604 * 119.71741 * 359.73393 * 4 3 2 23 23 C 1.37934 * 119.84295 * 0.55756 * 22 4 3 24 24 N 1.48021 * 119.92269 * 179.71210 * 23 22 4 25 25 O 1.21803 * 119.99885 * 179.73261 * 24 23 22 26 26 O 1.21794 * 119.99965 * 359.44941 * 24 23 22 27 27 C 1.38335 * 119.92605 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46567 * 269.97790 * 1 2 3 29 29 H 1.09000 * 109.47048 * 29.97165 * 1 2 3 30 30 H 1.08994 * 109.47705 * 149.97971 * 1 2 3 31 31 H 1.07995 * 120.07259 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.58981 * 353.41528 * 8 7 5 33 33 H 1.08997 * 109.58793 * 113.84696 * 8 7 5 34 34 H 1.08996 * 109.56487 * 185.55739 * 9 8 7 35 35 H 1.09004 * 109.38601 * 65.51324 * 9 8 7 36 36 H 1.08999 * 109.46025 * 301.21601 * 10 9 8 37 37 H 1.09006 * 109.44831 * 181.25283 * 10 9 8 38 38 H 0.96997 * 120.00349 * 180.02562 * 16 15 13 39 39 H 1.09000 * 109.58732 * 246.15492 * 21 7 5 40 40 H 1.08998 * 109.58869 * 6.43549 * 21 7 5 41 41 H 1.07990 * 120.07964 * 180.27011 * 22 4 3 42 42 H 1.08000 * 119.85234 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1958 0.0000 4 6 3.5909 1.1938 -0.0005 5 6 4.3352 2.4714 0.0000 6 8 3.8770 3.4419 -0.5706 7 7 5.5215 2.5599 0.6334 8 6 6.1056 1.3860 1.2963 9 6 6.4314 1.7436 2.7453 10 6 7.3205 2.9890 2.7734 11 6 6.5740 4.1652 2.1399 12 1 5.6471 4.3438 2.6850 13 6 7.4378 5.3988 2.1973 14 1 8.5087 5.3138 2.0860 15 6 6.8609 6.6359 2.3917 16 7 7.6201 7.6993 2.5410 17 14 5.0010 6.8014 2.4431 18 1 4.5386 6.7541 3.8536 19 1 4.6023 8.0961 1.8347 20 1 4.3835 5.6858 1.6820 21 6 6.2524 3.8336 0.6794 22 6 4.2813 -0.0195 0.0046 23 6 3.5809 -1.2078 -0.0016 24 7 4.3111 -2.4953 -0.0026 25 8 3.6940 -3.5455 -0.0031 26 8 5.5290 -2.5047 -0.0082 27 6 2.1971 -1.1989 -0.0005 28 1 -0.3632 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3634 -0.8897 -0.5141 31 1 1.6555 2.1311 -0.0004 32 1 5.3919 0.5623 1.2764 33 1 7.0200 1.0925 0.7809 34 1 6.9548 0.9123 3.2176 35 1 5.5061 1.9449 3.2852 36 1 8.2350 2.7951 2.2130 37 1 7.5720 3.2322 3.8058 38 1 7.2144 8.5696 2.6782 39 1 7.1791 3.7438 0.1125 40 1 5.6367 4.6240 0.2501 41 1 5.3612 -0.0278 0.0086 42 1 1.6535 -2.1321 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397715973.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:43 Heat of formation + Delta-G solvation = -18.983752 kcal Electronic energy + Delta-G solvation = -27000.336129 eV Core-core repulsion = 23141.334206 eV Total energy + Delta-G solvation = -3859.001923 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.37306 -41.95479 -40.11642 -38.59666 -37.73887 -35.66097 -34.50868 -33.70484 -33.09096 -32.15167 -28.54009 -27.86335 -27.23585 -26.90898 -24.36597 -23.62693 -22.97943 -21.61461 -20.64697 -19.86791 -19.50912 -18.98572 -18.68314 -18.23806 -17.68192 -17.28018 -16.74016 -16.56720 -15.86440 -15.53619 -15.35153 -14.93916 -14.82722 -14.66513 -14.42985 -14.11118 -13.84408 -13.53983 -13.43387 -13.31730 -13.09596 -12.96625 -12.75864 -12.63043 -12.54459 -12.32457 -12.31831 -12.09799 -11.77729 -11.69071 -11.40790 -11.18133 -10.95639 -10.81260 -10.78484 -10.16299 -9.72763 -8.37227 -6.40232 -1.35220 -0.61153 0.13685 0.21716 1.23191 1.31148 1.39087 1.42400 1.76590 2.17755 2.26568 2.94745 3.00401 3.19705 3.48714 3.52457 3.68096 3.79370 3.81490 4.01315 4.07347 4.18974 4.35117 4.37036 4.47823 4.56152 4.58129 4.65664 4.70727 4.79162 4.85340 4.88097 4.92542 4.99160 5.07993 5.17351 5.18157 5.27083 5.36905 5.51528 5.59312 5.65623 6.22366 6.28737 6.43295 6.68494 6.88267 7.26541 8.79245 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017591 B = 0.003982 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.366558 B = 7030.487814 C = 8156.305909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.070 4.070 3 C -0.020 4.020 4 C -0.126 4.126 5 C 0.546 3.454 6 O -0.576 6.576 7 N -0.597 5.597 8 C 0.074 3.926 9 C -0.130 4.130 10 C -0.102 4.102 11 C 0.006 3.994 12 H 0.025 0.975 13 C -0.512 4.512 14 H 0.044 0.956 15 C 0.023 3.977 16 N -0.941 5.941 17 Si 0.929 3.071 18 H -0.267 1.267 19 H -0.288 1.288 20 H -0.256 1.256 21 C 0.121 3.879 22 C -0.047 4.047 23 C -0.053 4.053 24 N 0.032 4.968 25 O -0.155 6.155 26 O -0.182 6.182 27 C -0.028 4.028 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.153 0.847 32 H 0.115 0.885 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.267 0.733 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.178 0.822 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.256 -21.812 -3.493 26.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.071 4.071 3 C -0.039 4.039 4 C -0.130 4.130 5 C 0.335 3.665 6 O -0.457 6.457 7 N -0.328 5.328 8 C -0.047 4.047 9 C -0.167 4.167 10 C -0.140 4.140 11 C -0.013 4.013 12 H 0.043 0.957 13 C -0.550 4.550 14 H 0.062 0.938 15 C -0.175 4.175 16 N -0.581 5.581 17 Si 0.755 3.245 18 H -0.192 1.192 19 H -0.215 1.215 20 H -0.180 1.180 21 C -0.001 4.001 22 C -0.066 4.066 23 C -0.136 4.136 24 N 0.549 4.451 25 O -0.373 6.373 26 O -0.393 6.393 27 C -0.047 4.047 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.171 0.829 32 H 0.133 0.867 33 H 0.114 0.886 34 H 0.123 0.877 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.195 0.805 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -15.762 -20.477 -3.746 26.111 hybrid contribution 0.186 0.841 0.025 0.862 sum -15.576 -19.636 -3.721 25.338 Atomic orbital electron populations 1.20999 0.86006 1.05402 1.04797 1.20173 0.99101 0.89711 0.98146 1.21804 0.91723 1.00589 0.89785 1.19710 0.95051 0.91414 1.06820 1.18560 0.81063 0.87880 0.78990 1.90776 1.68886 1.39625 1.46461 1.48426 1.19725 1.12701 1.51918 1.22845 1.00346 0.87329 0.94134 1.21901 1.00373 0.98867 0.95608 1.21476 0.98222 0.93686 1.00591 1.19428 0.95575 0.94545 0.91775 0.95697 1.21186 0.94159 0.90984 1.48693 0.93796 1.25793 1.01834 0.95721 0.94179 1.70020 1.37285 0.99947 1.50807 0.86000 0.81707 0.77858 0.78961 1.19244 1.21452 1.18046 1.22083 0.94776 0.83339 0.99879 1.21594 1.03114 0.89066 0.92863 1.20986 0.93320 0.82577 1.16738 1.43714 1.01203 1.03014 0.97139 1.94518 1.69256 1.20692 1.52864 1.94577 0.95820 1.94365 1.54528 1.21453 0.90022 1.01703 0.91560 0.88625 0.89772 0.88488 0.82892 0.86738 0.88565 0.87688 0.92310 0.92219 0.92638 0.92418 0.91458 0.92708 0.80481 0.79930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 10.01 71.24 0.71 0.08 16 2 C -0.07 -0.86 5.87 -19.90 -0.12 -0.97 16 3 C -0.02 -0.37 9.25 22.53 0.21 -0.16 16 4 C -0.13 -3.00 5.53 -20.09 -0.11 -3.11 16 5 C 0.55 18.30 7.45 86.79 0.65 18.94 16 6 O -0.58 -24.05 16.19 -3.85 -0.06 -24.12 16 7 N -0.60 -19.95 2.98 -823.16 -2.45 -22.40 16 8 C 0.07 1.82 4.87 86.22 0.42 2.24 16 9 C -0.13 -3.36 6.07 30.53 0.19 -3.17 16 10 C -0.10 -3.60 5.15 30.62 0.16 -3.44 16 11 C 0.01 0.29 1.79 -11.46 -0.02 0.27 16 12 H 0.02 1.15 5.60 -2.39 -0.01 1.14 16 13 C -0.51 -28.14 8.86 25.60 0.23 -27.91 16 14 H 0.04 2.64 8.06 -2.91 -0.02 2.62 16 15 C 0.02 1.33 5.47 84.66 0.46 1.80 16 16 N -0.94 -58.07 13.96 21.45 0.30 -57.77 16 17 Si 0.93 45.43 26.63 68.60 1.83 47.25 16 18 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 20 H -0.26 -12.45 5.99 99.48 0.60 -11.85 16 21 C 0.12 5.06 5.51 86.36 0.48 5.53 16 22 C -0.05 -0.96 6.95 22.53 0.16 -0.80 16 23 C -0.05 -0.98 6.85 36.34 0.25 -0.73 16 24 N 0.03 0.69 4.45 -46.55 -0.21 0.48 16 25 O -0.15 -3.37 18.44 18.88 0.35 -3.02 16 26 O -0.18 -4.43 18.44 18.89 0.35 -4.09 16 27 C -0.03 -0.37 9.20 22.33 0.21 -0.16 16 28 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.08 0.44 8.08 -2.39 -0.02 0.42 16 30 H 0.10 0.20 8.08 -2.39 -0.02 0.19 16 31 H 0.15 2.82 7.97 -2.91 -0.02 2.80 16 32 H 0.12 2.31 3.55 -3.78 -0.01 2.30 16 33 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 39 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 40 H 0.05 2.62 5.91 -2.39 -0.01 2.61 16 41 H 0.18 3.45 4.86 -2.92 -0.01 3.44 16 42 H 0.18 1.42 7.60 -2.91 -0.02 1.40 16 Total: -1.00 -72.79 345.13 4.90 -67.89 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 0.94 Total: 7.38 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: 3.86 Total: -11.60 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -2.36 Total: -79.69 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: 0.63 Total: -31.23 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.83 Total: 47.25 kcal Total: -72.79 4.90 -67.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397715973.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.908 kcal (2) G-P(sol) polarization free energy of solvation -72.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds