Wall clock time and date at job start Tue Mar 31 2020 12:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36909 * 120.00196 * 2 1 4 4 H 1.08000 * 119.99897 * 139.05513 * 3 2 1 5 5 C 1.39022 * 120.00169 * 319.06319 * 3 2 1 6 6 N 1.31378 * 120.00389 * 159.57679 * 5 3 2 7 7 Si 1.86800 * 119.99778 * 339.57797 * 5 3 2 8 8 H 1.48504 * 109.47206 * 93.23093 * 7 5 3 9 9 H 1.48499 * 109.47218 * 213.23342 * 7 5 3 10 10 H 1.48507 * 109.47259 * 333.23068 * 7 5 3 11 11 C 1.34774 * 120.00169 * 180.02562 * 2 1 3 12 12 O 1.21618 * 119.99914 * 5.43690 * 11 2 1 13 13 C 1.47468 * 120.00320 * 185.44126 * 11 2 1 14 14 C 1.39609 * 120.68524 * 317.41936 * 13 11 2 15 15 C 1.39921 * 118.13778 * 179.97438 * 14 13 11 16 16 C 1.39876 * 119.89886 * 359.81594 * 15 14 13 17 17 N 1.32148 * 119.96896 * 0.30383 * 16 15 14 18 18 C 1.32185 * 122.37737 * 359.81242 * 17 16 15 19 19 O 1.35228 * 119.50357 * 179.97438 * 18 17 16 20 20 C 1.50595 * 121.28144 * 180.34819 * 16 15 14 21 21 C 1.52588 * 111.25604 * 337.14786 * 20 16 15 22 22 C 1.52995 * 109.48739 * 294.85987 * 21 20 16 23 23 C 1.53004 * 109.47864 * 174.82144 * 21 20 16 24 24 C 1.53438 * 109.41095 * 54.84519 * 21 20 16 25 25 C 1.47428 * 119.71536 * 179.53805 * 15 14 13 26 26 O 1.21280 * 121.27664 * 348.89360 * 25 15 14 27 27 H 1.09002 * 109.46972 * 265.39658 * 1 2 3 28 28 H 1.08997 * 109.46977 * 25.39469 * 1 2 3 29 29 H 1.08996 * 109.47087 * 145.39973 * 1 2 3 30 30 H 0.96996 * 119.99826 * 179.97438 * 6 5 3 31 31 H 1.08007 * 120.92991 * 359.96097 * 14 13 11 32 32 H 0.96700 * 114.00008 * 269.99879 * 19 18 17 33 33 H 1.08997 * 109.12034 * 216.69580 * 20 16 15 34 34 H 1.08995 * 109.11877 * 97.60937 * 20 16 15 35 35 H 1.09000 * 109.47637 * 179.97438 * 22 21 20 36 36 H 1.09005 * 109.47463 * 299.94066 * 22 21 20 37 37 H 1.09006 * 109.46978 * 59.93343 * 22 21 20 38 38 H 1.08998 * 109.47377 * 300.06598 * 23 21 20 39 39 H 1.09003 * 109.47286 * 60.06820 * 23 21 20 40 40 H 1.08998 * 109.47051 * 180.02562 * 23 21 20 41 41 H 1.08995 * 109.88329 * 55.40229 * 24 21 20 42 42 H 1.09002 * 109.88925 * 176.41773 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1856 0.0000 4 1 3.0314 1.3000 0.6129 5 6 1.7095 2.2424 -0.7889 6 7 2.0868 3.4701 -0.5124 7 14 0.5818 1.9167 -2.2420 8 1 -0.8326 2.0632 -1.8135 9 1 0.8746 2.8908 -3.3239 10 1 0.8067 0.5372 -2.7437 11 6 2.1389 -1.1672 -0.0005 12 8 1.5349 -2.2180 -0.1008 13 6 3.6086 -1.1701 0.1206 14 6 4.3836 -0.2497 -0.5873 15 6 5.7733 -0.2999 -0.4324 16 6 6.3463 -1.2523 0.4168 17 7 5.5751 -2.1065 1.0664 18 6 4.2583 -2.1004 0.9512 19 8 3.5251 -3.0019 1.6428 20 6 7.8375 -1.3291 0.6126 21 6 8.5827 -0.7079 -0.5651 22 6 8.3221 -1.5332 -1.8267 23 6 10.0834 -0.6907 -0.2674 24 6 8.0876 0.7282 -0.7817 25 6 6.6258 0.6492 -1.1714 26 8 6.1746 1.3411 -2.0594 27 1 -0.3633 -0.0825 1.0244 28 1 -0.3633 0.9283 -0.4407 29 1 -0.3633 -0.8459 -0.5835 30 1 1.7800 4.2073 -1.0631 31 1 3.9234 0.4806 -1.2365 32 1 3.3683 -3.8292 1.1672 33 1 8.1314 -2.3742 0.7099 34 1 8.1055 -0.7973 1.5255 35 1 8.8541 -1.0890 -2.6680 36 1 8.6739 -2.5534 -1.6728 37 1 7.2528 -1.5458 -2.0381 38 1 10.2688 -0.1031 0.6317 39 1 10.4351 -1.7109 -0.1136 40 1 10.6156 -0.2465 -1.1085 41 1 8.1952 1.3003 0.1398 42 1 8.6592 1.2010 -1.5803 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408123939.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:23 Heat of formation + Delta-G solvation = -71.046536 kcal Electronic energy + Delta-G solvation = -27780.347284 eV Core-core repulsion = 23919.087750 eV Total energy + Delta-G solvation = -3861.259535 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.02837 -39.40238 -38.24563 -37.38902 -36.39014 -34.94877 -32.50131 -32.08054 -30.94240 -28.88407 -27.77832 -27.44467 -26.34862 -24.96863 -23.48235 -22.61283 -20.89924 -19.63048 -18.86766 -18.15468 -17.43238 -16.78698 -16.33065 -15.77440 -15.66614 -15.08222 -14.96190 -14.64470 -14.46579 -14.35987 -14.22003 -13.93655 -13.25228 -13.10537 -12.74539 -12.65355 -12.56655 -12.38303 -12.30011 -12.15620 -12.08025 -11.65016 -11.51907 -11.49005 -11.33490 -10.96315 -10.91574 -10.82758 -10.49461 -10.11939 -9.81697 -9.41760 -9.35893 -9.21544 -8.73831 -8.47225 -7.90254 -6.62697 -4.25467 0.65851 1.38010 2.49353 2.97780 3.15117 3.22457 3.43591 3.69602 3.92701 4.01715 4.16988 4.31562 4.45195 4.48541 4.59217 4.80021 4.89484 5.01859 5.21352 5.29866 5.33156 5.40781 5.49670 5.56278 5.62117 5.66407 5.70927 5.76907 5.83272 5.90094 5.99040 6.02224 6.10928 6.14501 6.22687 6.38937 6.42350 6.46507 6.77038 7.18936 7.70322 7.77521 7.89079 8.05128 8.06941 8.75709 9.13168 9.47191 10.46313 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014725 B = 0.005407 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.093766 B = 5177.677304 C = 6536.219720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.453 5.453 3 C -0.361 4.361 4 H 0.103 0.897 5 C 0.072 3.928 6 N -0.845 5.845 7 Si 0.877 3.123 8 H -0.271 1.271 9 H -0.283 1.283 10 H -0.259 1.259 11 C 0.528 3.472 12 O -0.588 6.588 13 C -0.174 4.174 14 C 0.054 3.946 15 C -0.250 4.250 16 C 0.209 3.791 17 N -0.524 5.524 18 C 0.375 3.625 19 O -0.470 6.470 20 C -0.064 4.064 21 C -0.057 4.057 22 C -0.151 4.151 23 C -0.138 4.138 24 C -0.154 4.154 25 C 0.408 3.592 26 O -0.443 6.443 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.279 0.721 31 H 0.172 0.828 32 H 0.406 0.594 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.104 0.896 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.188 -6.868 -0.465 14.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.173 5.173 3 C -0.487 4.487 4 H 0.121 0.879 5 C -0.137 4.137 6 N -0.478 5.478 7 Si 0.703 3.297 8 H -0.197 1.197 9 H -0.210 1.210 10 H -0.183 1.183 11 C 0.316 3.684 12 O -0.474 6.474 13 C -0.180 4.180 14 C 0.029 3.971 15 C -0.253 4.253 16 C 0.069 3.931 17 N -0.244 5.244 18 C 0.196 3.804 19 O -0.278 6.278 20 C -0.101 4.101 21 C -0.057 4.057 22 C -0.209 4.209 23 C -0.196 4.196 24 C -0.192 4.192 25 C 0.285 3.715 26 O -0.317 6.317 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.190 0.810 32 H 0.265 0.735 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.122 0.878 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.887 -6.986 -0.032 14.659 hybrid contribution -1.149 0.411 -1.278 1.767 sum 11.737 -6.576 -1.310 13.517 Atomic orbital electron populations 1.21838 0.82088 1.01495 1.01419 1.43464 1.04598 1.05493 1.63701 1.19071 1.13684 0.88127 1.27850 0.87907 1.25371 0.96711 0.94527 0.97138 1.69723 1.42539 0.98646 1.36880 0.86925 0.80434 0.79632 0.82671 1.19733 1.20967 1.18323 1.17688 0.85587 0.84169 0.80917 1.90624 1.69389 1.31760 1.55614 1.21022 0.96323 0.99894 1.00808 1.22491 0.90954 0.91676 0.92003 1.21153 0.95262 1.02890 1.06024 1.21199 0.95385 0.88058 0.88460 1.66938 1.05587 1.27135 1.24745 1.19205 0.85735 0.89250 0.86227 1.84565 1.69919 1.29539 1.43750 1.20503 0.87554 1.03326 0.98746 1.20503 0.95996 0.93817 0.95424 1.22022 1.02333 0.99916 0.96582 1.21832 0.93320 1.02376 1.02033 1.22443 0.94441 0.97761 1.04548 1.22350 0.89841 0.78816 0.80540 1.90584 1.77132 1.37797 1.26203 0.92963 0.91722 0.91805 0.91046 0.81035 0.73465 0.88807 0.88798 0.92022 0.91867 0.92350 0.92053 0.92014 0.92021 0.87813 0.88581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.63 9.05 59.85 0.54 2.17 16 2 N -0.45 -11.10 2.51 -123.41 -0.31 -11.41 16 3 C -0.36 -9.33 6.93 -14.99 -0.10 -9.43 16 4 H 0.10 2.84 6.75 -52.49 -0.35 2.49 16 5 C 0.07 1.88 5.28 -17.46 -0.09 1.79 16 6 N -0.84 -22.92 13.95 55.50 0.77 -22.14 16 7 Si 0.88 20.18 25.16 -169.99 -4.28 15.90 16 8 H -0.27 -5.91 6.63 56.52 0.37 -5.53 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 10 H -0.26 -6.09 7.11 56.52 0.40 -5.69 16 11 C 0.53 12.63 7.09 -12.50 -0.09 12.54 16 12 O -0.59 -14.52 15.90 -8.96 -0.14 -14.66 16 13 C -0.17 -3.74 5.28 -104.73 -0.55 -4.30 16 14 C 0.05 1.12 7.47 -38.44 -0.29 0.83 16 15 C -0.25 -4.38 5.04 -104.91 -0.53 -4.91 16 16 C 0.21 3.23 6.16 -81.89 -0.50 2.73 16 17 N -0.52 -9.13 10.23 -8.79 -0.09 -9.22 16 18 C 0.38 7.27 7.73 -16.50 -0.13 7.14 16 19 O -0.47 -8.56 12.40 -31.60 -0.39 -8.95 16 20 C -0.06 -0.69 4.64 -28.15 -0.13 -0.82 16 21 C -0.06 -0.53 0.77 -154.49 -0.12 -0.65 16 22 C -0.15 -1.51 7.99 37.16 0.30 -1.21 16 23 C -0.14 -0.93 8.48 37.16 0.31 -0.61 16 24 C -0.15 -1.73 5.07 -27.27 -0.14 -1.86 16 25 C 0.41 6.65 5.71 -30.18 -0.17 6.48 16 26 O -0.44 -8.84 17.30 5.56 0.10 -8.74 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.06 1.41 3.77 -51.93 -0.20 1.21 16 29 H 0.06 1.34 7.49 -51.93 -0.39 0.95 16 30 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.17 3.98 6.13 -52.48 -0.32 3.65 16 32 H 0.41 5.65 9.06 45.56 0.41 6.06 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.73 6.02 -51.93 -0.31 0.42 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 339.93 15.07 5.12 5.12 Total: -1.00 -31.72 339.93 -5.46 -37.18 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -4.55 Total: 7.03 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: -1.69 Total: 9.89 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.37 Total: -42.77 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -0.44 Total: -32.35 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.28 Total: 15.90 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.72 -5.46 -37.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408123939.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.870 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds