Wall clock time and date at job start Tue Mar 31 2020 12:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36909 * 120.00196 * 2 1 4 4 H 1.08000 * 119.99897 * 139.05513 * 3 2 1 5 5 C 1.39022 * 120.00169 * 319.06319 * 3 2 1 6 6 N 1.31378 * 120.00389 * 159.57679 * 5 3 2 7 7 Si 1.86800 * 119.99778 * 339.57797 * 5 3 2 8 8 H 1.48504 * 109.47206 * 93.23093 * 7 5 3 9 9 H 1.48499 * 109.47218 * 213.23342 * 7 5 3 10 10 H 1.48507 * 109.47259 * 333.23068 * 7 5 3 11 11 C 1.34774 * 120.00169 * 180.02562 * 2 1 3 12 12 O 1.21618 * 119.99914 * 5.43690 * 11 2 1 13 13 C 1.47468 * 120.00320 * 185.44126 * 11 2 1 14 14 C 1.39609 * 120.68524 * 317.41936 * 13 11 2 15 15 C 1.39921 * 118.13778 * 179.97438 * 14 13 11 16 16 C 1.39876 * 119.89886 * 359.81594 * 15 14 13 17 17 N 1.32148 * 119.96896 * 0.30383 * 16 15 14 18 18 C 1.32185 * 122.37737 * 359.81242 * 17 16 15 19 19 O 1.35228 * 119.50357 * 179.97438 * 18 17 16 20 20 C 1.50595 * 121.28144 * 180.34819 * 16 15 14 21 21 C 1.52588 * 111.25604 * 337.14786 * 20 16 15 22 22 C 1.52995 * 109.48739 * 294.85987 * 21 20 16 23 23 C 1.53004 * 109.47864 * 174.82144 * 21 20 16 24 24 C 1.53438 * 109.41095 * 54.84519 * 21 20 16 25 25 C 1.47428 * 119.71536 * 179.53805 * 15 14 13 26 26 O 1.21280 * 121.27664 * 348.89360 * 25 15 14 27 27 H 1.09002 * 109.46972 * 265.39658 * 1 2 3 28 28 H 1.08997 * 109.46977 * 25.39469 * 1 2 3 29 29 H 1.08996 * 109.47087 * 145.39973 * 1 2 3 30 30 H 0.96996 * 119.99826 * 179.97438 * 6 5 3 31 31 H 1.08007 * 120.92991 * 359.96097 * 14 13 11 32 32 H 0.96700 * 114.00008 * 269.99879 * 19 18 17 33 33 H 1.08997 * 109.12034 * 216.69580 * 20 16 15 34 34 H 1.08995 * 109.11877 * 97.60937 * 20 16 15 35 35 H 1.09000 * 109.47637 * 179.97438 * 22 21 20 36 36 H 1.09005 * 109.47463 * 299.94066 * 22 21 20 37 37 H 1.09006 * 109.46978 * 59.93343 * 22 21 20 38 38 H 1.08998 * 109.47377 * 300.06598 * 23 21 20 39 39 H 1.09003 * 109.47286 * 60.06820 * 23 21 20 40 40 H 1.08998 * 109.47051 * 180.02562 * 23 21 20 41 41 H 1.08995 * 109.88329 * 55.40229 * 24 21 20 42 42 H 1.09002 * 109.88925 * 176.41773 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1856 0.0000 4 1 3.0314 1.3000 0.6129 5 6 1.7095 2.2424 -0.7889 6 7 2.0868 3.4701 -0.5124 7 14 0.5818 1.9167 -2.2420 8 1 -0.8326 2.0632 -1.8135 9 1 0.8746 2.8908 -3.3239 10 1 0.8067 0.5372 -2.7437 11 6 2.1389 -1.1672 -0.0005 12 8 1.5349 -2.2180 -0.1008 13 6 3.6086 -1.1701 0.1206 14 6 4.3836 -0.2497 -0.5873 15 6 5.7733 -0.2999 -0.4324 16 6 6.3463 -1.2523 0.4168 17 7 5.5751 -2.1065 1.0664 18 6 4.2583 -2.1004 0.9512 19 8 3.5251 -3.0019 1.6428 20 6 7.8375 -1.3291 0.6126 21 6 8.5827 -0.7079 -0.5651 22 6 8.3221 -1.5332 -1.8267 23 6 10.0834 -0.6907 -0.2674 24 6 8.0876 0.7282 -0.7817 25 6 6.6258 0.6492 -1.1714 26 8 6.1746 1.3411 -2.0594 27 1 -0.3633 -0.0825 1.0244 28 1 -0.3633 0.9283 -0.4407 29 1 -0.3633 -0.8459 -0.5835 30 1 1.7800 4.2073 -1.0631 31 1 3.9234 0.4806 -1.2365 32 1 3.3683 -3.8292 1.1672 33 1 8.1314 -2.3742 0.7099 34 1 8.1055 -0.7973 1.5255 35 1 8.8541 -1.0890 -2.6680 36 1 8.6739 -2.5534 -1.6728 37 1 7.2528 -1.5458 -2.0381 38 1 10.2688 -0.1031 0.6317 39 1 10.4351 -1.7109 -0.1136 40 1 10.6156 -0.2465 -1.1085 41 1 8.1952 1.3003 0.1398 42 1 8.6592 1.2010 -1.5803 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408123939.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:22 Heat of formation + Delta-G solvation = -94.943732 kcal Electronic energy + Delta-G solvation = -27781.383545 eV Core-core repulsion = 23919.087750 eV Total energy + Delta-G solvation = -3862.295795 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.39800 -40.91767 -39.88627 -38.62803 -37.67562 -36.85522 -34.10451 -33.98288 -32.22384 -29.96988 -29.06059 -28.19141 -27.92861 -26.79682 -24.88524 -23.99878 -22.29235 -21.15390 -20.21247 -19.82611 -18.85730 -18.19316 -18.11861 -17.15423 -17.12930 -16.78750 -16.22822 -16.11767 -15.99024 -15.79933 -15.27220 -15.15274 -14.73287 -14.65772 -14.57407 -14.20025 -14.11953 -13.75209 -13.42658 -13.34378 -12.98253 -12.94068 -12.86547 -12.78792 -12.56463 -12.35229 -12.18297 -12.00797 -11.69351 -11.65679 -11.40121 -11.12663 -10.94818 -10.63384 -10.48468 -9.94951 -9.82492 -8.64085 -6.29623 -0.76392 -0.16848 1.09193 1.15951 1.26117 1.35728 1.75069 2.07469 2.26911 2.35887 2.60098 2.85921 2.98367 3.30272 3.50150 3.65274 3.75229 3.85910 3.87431 4.11486 4.21551 4.23840 4.36846 4.46634 4.50009 4.63267 4.70456 4.71903 4.81930 4.86105 4.91654 4.96990 5.02928 5.07948 5.15984 5.21947 5.27202 5.35761 5.39611 5.56540 5.87328 6.06311 6.38596 6.45231 6.63718 6.76930 7.16993 7.53556 8.49037 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014725 B = 0.005407 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.093766 B = 5177.677304 C = 6536.219720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.469 5.469 3 C -0.354 4.354 4 H 0.074 0.926 5 C 0.038 3.962 6 N -0.883 5.883 7 Si 0.925 3.075 8 H -0.245 1.245 9 H -0.281 1.281 10 H -0.271 1.271 11 C 0.525 3.475 12 O -0.600 6.600 13 C -0.210 4.210 14 C 0.041 3.959 15 C -0.261 4.261 16 C 0.230 3.770 17 N -0.521 5.521 18 C 0.383 3.617 19 O -0.477 6.477 20 C -0.065 4.065 21 C -0.047 4.047 22 C -0.155 4.155 23 C -0.132 4.132 24 C -0.147 4.147 25 C 0.406 3.594 26 O -0.492 6.492 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.284 0.716 31 H 0.138 0.862 32 H 0.423 0.577 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.024 0.976 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.126 0.874 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.806 -8.049 0.144 17.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.188 5.188 3 C -0.481 4.481 4 H 0.092 0.908 5 C -0.169 4.169 6 N -0.518 5.518 7 Si 0.749 3.251 8 H -0.170 1.170 9 H -0.208 1.208 10 H -0.195 1.195 11 C 0.315 3.685 12 O -0.486 6.486 13 C -0.216 4.216 14 C 0.015 3.985 15 C -0.264 4.264 16 C 0.090 3.910 17 N -0.241 5.241 18 C 0.203 3.797 19 O -0.287 6.287 20 C -0.102 4.102 21 C -0.048 4.048 22 C -0.212 4.212 23 C -0.189 4.189 24 C -0.184 4.184 25 C 0.286 3.714 26 O -0.369 6.369 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.155 0.845 32 H 0.286 0.714 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.043 0.957 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.144 0.856 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 15.502 -8.192 0.590 17.544 hybrid contribution -1.856 0.662 -1.427 2.433 sum 13.646 -7.530 -0.837 15.609 Atomic orbital electron populations 1.21950 0.80744 1.01868 1.02589 1.43599 1.05635 1.05144 1.64457 1.18765 1.13225 0.88686 1.27420 0.90834 1.25874 0.98136 0.94152 0.98739 1.69775 1.44491 0.99405 1.38177 0.86166 0.80332 0.78619 0.79939 1.16978 1.20752 1.19548 1.18101 0.86765 0.83825 0.79844 1.90583 1.70151 1.31909 1.55991 1.20929 0.95175 1.02037 1.03491 1.22223 0.92834 0.91382 0.92056 1.21483 0.94124 1.04081 1.06721 1.22072 0.97732 0.85545 0.85613 1.67171 1.04422 1.27496 1.25038 1.19221 0.86498 0.88638 0.85331 1.84504 1.70014 1.30298 1.43920 1.20816 0.83475 1.05412 1.00457 1.20516 0.97986 0.91881 0.94397 1.22077 1.00232 1.01408 0.97476 1.21804 0.90237 1.03789 1.03081 1.22555 0.90027 0.99836 1.05964 1.23144 0.92106 0.77069 0.79103 1.90566 1.78475 1.39535 1.28339 0.91497 0.91580 0.91019 0.90626 0.84460 0.71407 0.86528 0.86088 0.91099 0.90054 0.95732 0.90668 0.90555 0.91135 0.85618 0.86956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 3.10 9.05 127.77 1.16 4.25 16 2 N -0.47 -23.64 2.51 -662.61 -1.66 -25.30 16 3 C -0.35 -19.17 6.93 84.09 0.58 -18.58 16 4 H 0.07 4.35 6.75 -2.91 -0.02 4.33 16 5 C 0.04 2.01 5.28 84.95 0.45 2.46 16 6 N -0.88 -49.64 13.95 21.68 0.30 -49.34 16 7 Si 0.93 42.35 25.16 68.60 1.73 44.07 16 8 H -0.24 -10.13 6.63 99.48 0.66 -9.47 16 9 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 10 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 11 C 0.53 25.96 7.09 86.68 0.61 26.57 16 12 O -0.60 -30.08 15.90 9.51 0.15 -29.93 16 13 C -0.21 -9.39 5.28 -19.93 -0.11 -9.49 16 14 C 0.04 1.79 7.47 23.01 0.17 1.96 16 15 C -0.26 -9.30 5.04 -20.05 -0.10 -9.41 16 16 C 0.23 6.74 6.16 42.87 0.26 7.01 16 17 N -0.52 -17.43 10.23 -294.88 -3.02 -20.45 16 18 C 0.38 14.86 7.73 85.22 0.66 15.52 16 19 O -0.48 -17.15 12.40 -71.51 -0.89 -18.04 16 20 C -0.06 -1.13 4.64 29.68 0.14 -0.99 16 21 C -0.05 -0.70 0.77 -52.17 -0.04 -0.74 16 22 C -0.15 -2.68 7.99 71.98 0.58 -2.10 16 23 C -0.13 -1.05 8.48 71.98 0.61 -0.44 16 24 C -0.15 -2.89 5.07 30.25 0.15 -2.73 16 25 C 0.41 13.35 5.71 28.36 0.16 13.51 16 26 O -0.49 -20.57 17.30 -3.03 -0.05 -20.63 16 27 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 28 H 0.07 2.85 3.77 -2.39 -0.01 2.84 16 29 H 0.07 2.99 7.49 -2.39 -0.02 2.98 16 30 H 0.28 14.79 8.31 -92.71 -0.77 14.02 16 31 H 0.14 6.96 6.13 -2.91 -0.02 6.94 16 32 H 0.42 11.52 9.06 -74.06 -0.67 10.85 16 33 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.02 0.58 6.02 -2.38 -0.01 0.57 16 38 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.11 1.91 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -72.70 339.93 2.21 -70.50 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.36 Total: 22.31 kcal Atomic # 6 Polarization: 21.52 SS G_CDS: 5.29 Total: 26.81 kcal Atomic # 7 Polarization: -90.71 SS G_CDS: -4.38 Total: -95.09 kcal Atomic # 8 Polarization: -67.81 SS G_CDS: -0.79 Total: -68.60 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.73 Total: 44.07 kcal Total: -72.70 2.21 -70.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408123939.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.448 kcal (2) G-P(sol) polarization free energy of solvation -72.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds