Wall clock time and date at job start Tue Mar 31 2020 13:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37983 * 120.07494 * 2 1 4 4 C 1.38334 * 120.14688 * 179.70225 * 3 2 1 5 5 C 1.50699 * 119.85645 * 180.27639 * 4 3 2 6 6 C 1.38387 * 120.28827 * 0.59272 * 4 3 2 7 7 N 1.48016 * 119.92282 * 179.70924 * 6 4 3 8 8 O 1.21802 * 119.99472 * 181.74443 * 7 6 4 9 9 O 1.21797 * 120.00292 * 1.73119 * 7 6 4 10 10 C 1.37932 * 120.14807 * 359.67866 * 6 4 3 11 11 C 1.39561 * 120.07590 * 180.26915 * 2 1 3 12 12 C 1.47844 * 120.13817 * 359.97438 * 11 2 1 13 13 O 1.21551 * 120.00621 * 2.85119 * 12 11 2 14 14 N 1.34777 * 119.99611 * 182.84071 * 12 11 2 15 15 C 1.46503 * 120.00094 * 184.92436 * 14 12 11 16 16 C 1.52997 * 109.47007 * 184.81261 * 15 14 12 17 17 C 1.50702 * 115.55156 * 306.09846 * 16 15 14 18 18 H 1.08000 * 119.99639 * 143.99861 * 17 16 15 19 19 C 1.37871 * 120.00053 * 324.00388 * 17 16 15 20 20 N 1.31516 * 120.00186 * 3.23326 * 19 17 16 21 21 Si 1.86806 * 119.99863 * 183.23618 * 19 17 16 22 22 H 1.48495 * 109.47051 * 359.97438 * 21 19 17 23 23 H 1.48508 * 109.46908 * 119.99656 * 21 19 17 24 24 H 1.48496 * 109.47043 * 239.99559 * 21 19 17 25 25 C 1.53005 * 117.49617 * 160.43475 * 16 15 14 26 26 C 1.53000 * 117.49943 * 91.77626 * 16 15 14 27 27 H 1.09002 * 109.47237 * 261.94240 * 1 2 3 28 28 H 1.08996 * 109.47169 * 21.93963 * 1 2 3 29 29 H 1.08998 * 109.47002 * 141.94524 * 1 2 3 30 30 H 1.08004 * 119.92346 * 359.97266 * 3 2 1 31 31 H 1.09005 * 109.46946 * 262.97652 * 5 4 3 32 32 H 1.09002 * 109.46975 * 22.97490 * 5 4 3 33 33 H 1.09000 * 109.46993 * 142.97570 * 5 4 3 34 34 H 1.08002 * 120.07561 * 180.02562 * 10 6 4 35 35 H 0.96999 * 120.00214 * 4.92525 * 14 12 11 36 36 H 1.08996 * 109.47247 * 304.81433 * 15 14 12 37 37 H 1.08999 * 109.46886 * 64.81363 * 15 14 12 38 38 H 0.97004 * 119.99511 * 185.01003 * 20 19 17 39 39 H 1.09003 * 117.49976 * 359.97438 * 25 16 15 40 40 H 1.09006 * 117.49788 * 145.01861 * 25 16 15 41 41 H 1.08997 * 117.49940 * 214.97941 * 26 16 15 42 42 H 1.08999 * 117.49980 * 359.97263 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1941 0.0000 4 6 3.5818 1.1958 0.0062 5 6 4.3304 2.5037 0.0125 6 6 4.2813 0.0018 0.0001 7 7 5.7614 0.0131 0.0003 8 8 6.3784 -1.0364 -0.0372 9 8 6.3623 1.0718 0.0377 10 6 3.6023 -1.1988 -0.0055 11 6 2.2064 -1.2077 -0.0057 12 6 1.4720 -2.4908 -0.0111 13 8 0.2576 -2.4959 -0.0630 14 7 2.1491 -3.6550 0.0412 15 6 1.4301 -4.9263 -0.0728 16 6 2.4069 -6.0851 0.1368 17 6 3.6268 -6.0750 -0.7479 18 1 4.5769 -6.4131 -0.3614 19 6 3.5301 -5.6341 -2.0506 20 7 2.3883 -5.1628 -2.5023 21 14 5.0207 -5.7062 -3.1742 22 1 6.1742 -6.2729 -2.4304 23 1 4.7161 -6.5660 -4.3462 24 1 5.3567 -4.3365 -3.6392 25 6 1.8178 -7.4464 0.5123 26 6 2.5706 -6.6225 1.5599 27 1 -0.3634 -0.1440 1.0175 28 1 -0.3633 0.9532 -0.3840 29 1 -0.3633 -0.8092 -0.6335 30 1 1.6584 2.1294 -0.0004 31 1 4.6245 2.7589 -1.0056 32 1 3.6878 3.2882 0.4125 33 1 5.2201 2.4101 0.6351 34 1 4.1494 -2.1300 -0.0099 35 1 3.1124 -3.6511 0.1545 36 1 0.6468 -4.9700 0.6839 37 1 0.9826 -5.0030 -1.0638 38 1 2.2996 -4.9206 -3.4374 39 1 0.7344 -7.5163 0.6104 40 1 2.3129 -8.3347 0.1197 41 1 3.5606 -6.9689 1.8563 42 1 1.9828 -6.1501 2.3470 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421533216.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:52 Heat of formation + Delta-G solvation = 14.222094 kcal Electronic energy + Delta-G solvation = -27105.122997 eV Core-core repulsion = 23247.560988 eV Total energy + Delta-G solvation = -3857.562009 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.19969 -40.28273 -38.41002 -36.79495 -36.57071 -33.91145 -33.50500 -32.42970 -32.13777 -28.84145 -27.84868 -26.14583 -25.50531 -24.78962 -22.96074 -21.61041 -21.30667 -20.37917 -19.46647 -18.64890 -18.50471 -17.50591 -16.72034 -16.39890 -15.72259 -15.33991 -14.99887 -14.74394 -14.66406 -14.32984 -13.98593 -13.73186 -13.33647 -13.04897 -12.94134 -12.65426 -12.26346 -12.09925 -12.04135 -11.87258 -11.83225 -11.49461 -11.28303 -11.14596 -11.04458 -10.80329 -10.61674 -10.56244 -10.33228 -9.78123 -9.43232 -9.20041 -9.17902 -8.98888 -8.95523 -8.39006 -8.02916 -6.11854 -4.29460 -0.12570 0.58667 1.34258 1.45632 2.81598 3.18664 3.29816 3.33349 3.67143 3.84047 4.19815 4.23967 4.25486 4.53033 4.65887 4.83675 4.95796 5.12439 5.24572 5.35582 5.36681 5.39533 5.55128 5.59148 5.73693 5.75250 5.89056 5.91472 5.98430 6.16372 6.21556 6.41524 6.47601 6.54003 6.58346 6.62049 6.81075 6.98962 7.18531 7.38497 7.49663 7.74495 7.84580 8.21163 8.30622 8.73031 8.85769 9.35079 10.79130 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011676 B = 0.005057 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.434741 B = 5535.546623 C = 6848.466843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.028 3.972 3 C -0.140 4.140 4 C 0.001 3.999 5 C -0.139 4.139 6 C -0.066 4.066 7 N 0.037 4.963 8 O -0.158 6.158 9 O -0.170 6.170 10 C -0.012 4.012 11 C -0.130 4.130 12 C 0.549 3.451 13 O -0.549 6.549 14 N -0.669 5.669 15 C 0.164 3.836 16 C 0.032 3.968 17 C -0.495 4.495 18 H 0.064 0.936 19 C 0.074 3.926 20 N -0.872 5.872 21 Si 0.890 3.110 22 H -0.270 1.270 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.195 4.195 26 C -0.211 4.211 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.116 0.884 30 H 0.149 0.851 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.160 0.840 35 H 0.400 0.600 36 H 0.028 0.972 37 H 0.116 0.884 38 H 0.262 0.738 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.126 13.319 4.720 14.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.027 3.973 3 C -0.159 4.159 4 C 0.000 4.000 5 C -0.195 4.195 6 C -0.150 4.150 7 N 0.553 4.447 8 O -0.374 6.374 9 O -0.381 6.381 10 C -0.032 4.032 11 C -0.134 4.134 12 C 0.334 3.666 13 O -0.431 6.431 14 N -0.315 5.315 15 C 0.042 3.958 16 C 0.031 3.969 17 C -0.532 4.532 18 H 0.082 0.918 19 C -0.130 4.130 20 N -0.509 5.509 21 Si 0.718 3.282 22 H -0.194 1.194 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.234 4.234 26 C -0.248 4.248 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.134 0.866 30 H 0.167 0.833 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.124 0.876 34 H 0.178 0.822 35 H 0.236 0.764 36 H 0.046 0.954 37 H 0.134 0.866 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.718 13.400 4.504 14.396 hybrid contribution 1.745 -0.270 -0.660 1.885 sum -0.974 13.131 3.844 13.716 Atomic orbital electron populations 1.21328 0.88610 1.04146 1.04775 1.20533 0.98106 0.91061 0.87609 1.20993 0.91660 0.98700 1.04499 1.19976 0.94159 0.94207 0.91679 1.21424 1.01535 0.91822 1.04680 1.20753 0.79292 0.96237 1.18711 1.43529 1.03452 1.00368 0.97383 1.94604 1.68249 1.21240 1.53335 1.94395 1.70036 1.19734 1.53937 1.21311 0.94035 0.97625 0.90264 1.20099 0.91722 0.95572 1.06024 1.17715 0.87102 0.83215 0.78598 1.90631 1.13005 1.86862 1.52565 1.45710 1.11526 1.05541 1.68678 1.21193 0.92125 0.79823 1.02676 1.19245 0.96173 0.90177 0.91283 1.20602 0.93578 1.43195 0.95840 0.91780 1.24992 0.96197 0.93699 0.98132 1.69869 1.24173 1.41831 1.15013 0.86541 0.82933 0.77999 0.80764 1.19400 1.20821 1.20808 1.22941 0.97156 0.98012 1.05301 1.22966 1.00440 1.07651 0.93789 0.89799 0.91975 0.86583 0.83346 0.89525 0.90825 0.87568 0.82217 0.76436 0.95398 0.86611 0.92709 0.91412 0.90100 0.90482 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 8.84 36.01 0.32 -1.30 16 2 C 0.03 0.37 5.91 -104.22 -0.62 -0.24 16 3 C -0.14 -1.51 9.28 -39.64 -0.37 -1.88 16 4 C 0.00 0.02 5.89 -104.53 -0.62 -0.60 16 5 C -0.14 -1.29 8.80 36.00 0.32 -0.97 16 6 C -0.07 -0.98 6.84 -80.01 -0.55 -1.52 16 7 N 0.04 0.59 4.45 33.93 0.15 0.74 16 8 O -0.16 -2.81 18.44 -29.46 -0.54 -3.35 16 9 O -0.17 -2.56 15.25 -29.46 -0.45 -3.00 16 10 C -0.01 -0.20 9.03 -39.19 -0.35 -0.55 16 11 C -0.13 -2.08 5.87 -104.97 -0.62 -2.70 16 12 C 0.55 10.52 7.74 -12.33 -0.10 10.42 16 13 O -0.55 -11.39 13.22 5.32 0.07 -11.31 16 14 N -0.67 -13.61 5.09 -61.25 -0.31 -13.92 16 15 C 0.16 3.67 4.63 -4.04 -0.02 3.65 16 16 C 0.03 0.72 2.07 -155.66 -0.32 0.40 16 17 C -0.49 -12.15 8.27 -34.44 -0.28 -12.43 16 18 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 19 C 0.07 1.83 5.31 -17.82 -0.09 1.73 16 20 N -0.87 -22.24 10.21 55.43 0.57 -21.67 16 21 Si 0.89 19.99 29.54 -169.99 -5.02 14.97 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C -0.20 -4.11 9.96 -26.69 -0.27 -4.37 16 26 C -0.21 -4.25 9.92 -26.69 -0.26 -4.51 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.57 8.03 -51.93 -0.42 0.15 16 29 H 0.12 1.76 5.67 -51.93 -0.29 1.46 16 30 H 0.15 1.10 8.04 -52.48 -0.42 0.68 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.49 8.03 -51.93 -0.42 0.08 16 33 H 0.11 1.09 5.60 -51.93 -0.29 0.80 16 34 H 0.16 2.59 5.99 -52.49 -0.31 2.28 16 35 H 0.40 7.95 5.99 -40.82 -0.24 7.71 16 36 H 0.03 0.61 8.05 -51.93 -0.42 0.19 16 37 H 0.12 2.93 5.95 -51.93 -0.31 2.62 16 38 H 0.26 6.57 8.32 -40.82 -0.34 6.24 16 39 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 41 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 352.22 15.07 5.31 5.31 Total: -1.00 -27.08 352.22 -9.27 -36.34 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -5.21 Total: 10.79 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -3.83 Total: -14.88 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 0.41 Total: -34.86 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.92 Total: -17.67 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.08 -9.27 -36.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421533216.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.565 kcal (2) G-P(sol) polarization free energy of solvation -27.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds