Wall clock time and date at job start Tue Mar 31 2020 13:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37983 * 120.07494 * 2 1 4 4 C 1.38334 * 120.14688 * 179.70225 * 3 2 1 5 5 C 1.50699 * 119.85645 * 180.27639 * 4 3 2 6 6 C 1.38387 * 120.28827 * 0.59272 * 4 3 2 7 7 N 1.48016 * 119.92282 * 179.70924 * 6 4 3 8 8 O 1.21802 * 119.99472 * 181.74443 * 7 6 4 9 9 O 1.21797 * 120.00292 * 1.73119 * 7 6 4 10 10 C 1.37932 * 120.14807 * 359.67866 * 6 4 3 11 11 C 1.39561 * 120.07590 * 180.26915 * 2 1 3 12 12 C 1.47844 * 120.13817 * 359.97438 * 11 2 1 13 13 O 1.21551 * 120.00621 * 2.85119 * 12 11 2 14 14 N 1.34777 * 119.99611 * 182.84071 * 12 11 2 15 15 C 1.46503 * 120.00094 * 184.92436 * 14 12 11 16 16 C 1.52997 * 109.47007 * 184.81261 * 15 14 12 17 17 C 1.50702 * 115.55156 * 306.09846 * 16 15 14 18 18 H 1.08000 * 119.99639 * 143.99861 * 17 16 15 19 19 C 1.37871 * 120.00053 * 324.00388 * 17 16 15 20 20 N 1.31516 * 120.00186 * 3.23326 * 19 17 16 21 21 Si 1.86806 * 119.99863 * 183.23618 * 19 17 16 22 22 H 1.48495 * 109.47051 * 359.97438 * 21 19 17 23 23 H 1.48508 * 109.46908 * 119.99656 * 21 19 17 24 24 H 1.48496 * 109.47043 * 239.99559 * 21 19 17 25 25 C 1.53005 * 117.49617 * 160.43475 * 16 15 14 26 26 C 1.53000 * 117.49943 * 91.77626 * 16 15 14 27 27 H 1.09002 * 109.47237 * 261.94240 * 1 2 3 28 28 H 1.08996 * 109.47169 * 21.93963 * 1 2 3 29 29 H 1.08998 * 109.47002 * 141.94524 * 1 2 3 30 30 H 1.08004 * 119.92346 * 359.97266 * 3 2 1 31 31 H 1.09005 * 109.46946 * 262.97652 * 5 4 3 32 32 H 1.09002 * 109.46975 * 22.97490 * 5 4 3 33 33 H 1.09000 * 109.46993 * 142.97570 * 5 4 3 34 34 H 1.08002 * 120.07561 * 180.02562 * 10 6 4 35 35 H 0.96999 * 120.00214 * 4.92525 * 14 12 11 36 36 H 1.08996 * 109.47247 * 304.81433 * 15 14 12 37 37 H 1.08999 * 109.46886 * 64.81363 * 15 14 12 38 38 H 0.97004 * 119.99511 * 185.01003 * 20 19 17 39 39 H 1.09003 * 117.49976 * 359.97438 * 25 16 15 40 40 H 1.09006 * 117.49788 * 145.01861 * 25 16 15 41 41 H 1.08997 * 117.49940 * 214.97941 * 26 16 15 42 42 H 1.08999 * 117.49980 * 359.97263 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1941 0.0000 4 6 3.5818 1.1958 0.0062 5 6 4.3304 2.5037 0.0125 6 6 4.2813 0.0018 0.0001 7 7 5.7614 0.0131 0.0003 8 8 6.3784 -1.0364 -0.0372 9 8 6.3623 1.0718 0.0377 10 6 3.6023 -1.1988 -0.0055 11 6 2.2064 -1.2077 -0.0057 12 6 1.4720 -2.4908 -0.0111 13 8 0.2576 -2.4959 -0.0630 14 7 2.1491 -3.6550 0.0412 15 6 1.4301 -4.9263 -0.0728 16 6 2.4069 -6.0851 0.1368 17 6 3.6268 -6.0750 -0.7479 18 1 4.5769 -6.4131 -0.3614 19 6 3.5301 -5.6341 -2.0506 20 7 2.3883 -5.1628 -2.5023 21 14 5.0207 -5.7062 -3.1742 22 1 6.1742 -6.2729 -2.4304 23 1 4.7161 -6.5660 -4.3462 24 1 5.3567 -4.3365 -3.6392 25 6 1.8178 -7.4464 0.5123 26 6 2.5706 -6.6225 1.5599 27 1 -0.3634 -0.1440 1.0175 28 1 -0.3633 0.9532 -0.3840 29 1 -0.3633 -0.8092 -0.6335 30 1 1.6584 2.1294 -0.0004 31 1 4.6245 2.7589 -1.0056 32 1 3.6878 3.2882 0.4125 33 1 5.2201 2.4101 0.6351 34 1 4.1494 -2.1300 -0.0099 35 1 3.1124 -3.6511 0.1545 36 1 0.6468 -4.9700 0.6839 37 1 0.9826 -5.0030 -1.0638 38 1 2.2996 -4.9206 -3.4374 39 1 0.7344 -7.5163 0.6104 40 1 2.3129 -8.3347 0.1197 41 1 3.5606 -6.9689 1.8563 42 1 1.9828 -6.1501 2.3470 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421533216.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:51 Heat of formation + Delta-G solvation = 1.238598 kcal Electronic energy + Delta-G solvation = -27105.686004 eV Core-core repulsion = 23247.560988 eV Total energy + Delta-G solvation = -3858.125016 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.41255 -41.54043 -39.79557 -38.46691 -37.81904 -35.28181 -34.67891 -34.21782 -33.45236 -30.00759 -28.80993 -27.82862 -27.18567 -26.08329 -24.03179 -23.02574 -22.69196 -21.74207 -21.21497 -20.00127 -19.80548 -18.73489 -18.35971 -17.78702 -17.03173 -16.81245 -16.38867 -16.21365 -16.19311 -15.57053 -15.24705 -14.98232 -14.77816 -14.28082 -14.07968 -13.86421 -13.62746 -13.37162 -13.24812 -13.13321 -13.00689 -12.99282 -12.91211 -12.63459 -12.50363 -12.33578 -12.30861 -12.07728 -11.68367 -11.53733 -10.96196 -10.76072 -10.61732 -10.41303 -10.28422 -10.19071 -9.69636 -8.03151 -6.25295 -1.28013 -0.53857 0.20013 0.29529 1.34915 1.42641 1.49831 1.62203 2.26265 2.36185 2.46691 2.99402 3.19708 3.22083 3.49689 3.56459 3.60644 3.86420 3.99822 4.21591 4.30987 4.38729 4.49205 4.50921 4.58760 4.68512 4.70483 4.77220 4.79528 4.93673 4.94631 5.00379 5.03259 5.08517 5.17361 5.26336 5.42275 5.49736 5.55704 5.56720 5.78315 5.92721 6.32810 6.49776 6.66489 6.84639 7.30170 7.39906 8.84791 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011676 B = 0.005057 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.434741 B = 5535.546623 C = 6848.466843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.030 3.970 3 C -0.118 4.118 4 C 0.015 3.985 5 C -0.139 4.139 6 C -0.082 4.082 7 N 0.037 4.963 8 O -0.232 6.232 9 O -0.124 6.124 10 C -0.022 4.022 11 C -0.151 4.151 12 C 0.545 3.455 13 O -0.569 6.569 14 N -0.676 5.676 15 C 0.178 3.822 16 C 0.003 3.997 17 C -0.501 4.501 18 H 0.056 0.944 19 C 0.041 3.959 20 N -0.889 5.889 21 Si 0.937 3.063 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.289 1.289 25 C -0.193 4.193 26 C -0.189 4.189 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.082 0.918 30 H 0.200 0.800 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.140 0.860 35 H 0.399 0.601 36 H 0.028 0.972 37 H 0.084 0.916 38 H 0.258 0.742 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.569 16.602 5.358 17.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.029 3.971 3 C -0.136 4.136 4 C 0.013 3.987 5 C -0.195 4.195 6 C -0.166 4.166 7 N 0.550 4.450 8 O -0.429 6.429 9 O -0.350 6.350 10 C -0.042 4.042 11 C -0.155 4.155 12 C 0.332 3.668 13 O -0.452 6.452 14 N -0.322 5.322 15 C 0.054 3.946 16 C 0.003 3.997 17 C -0.539 4.539 18 H 0.074 0.926 19 C -0.160 4.160 20 N -0.526 5.526 21 Si 0.764 3.236 22 H -0.193 1.193 23 H -0.207 1.207 24 H -0.215 1.215 25 C -0.231 4.231 26 C -0.227 4.227 27 H 0.106 0.894 28 H 0.121 0.879 29 H 0.100 0.900 30 H 0.217 0.783 31 H 0.115 0.885 32 H 0.131 0.869 33 H 0.115 0.885 34 H 0.158 0.842 35 H 0.235 0.765 36 H 0.046 0.954 37 H 0.102 0.898 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.133 16.510 5.145 17.575 hybrid contribution 1.837 -1.072 -0.818 2.278 sum -1.296 15.439 4.327 16.086 Atomic orbital electron populations 1.21281 0.87691 1.05038 1.04456 1.20808 0.98806 0.90851 0.86623 1.21472 0.90986 0.99413 1.01713 1.20473 0.94801 0.94209 0.89230 1.21550 1.01657 0.91010 1.05247 1.20914 0.78316 0.97092 1.20239 1.43726 1.04114 1.00095 0.97019 1.94630 1.68950 1.21835 1.57511 1.94349 1.70565 1.19315 1.50808 1.21124 0.94044 0.97714 0.91335 1.19855 0.91640 0.95069 1.08974 1.18213 0.87089 0.83993 0.77459 1.90625 1.13873 1.87435 1.53290 1.45684 1.11422 1.05566 1.69494 1.20830 0.92138 0.80897 1.00713 1.19296 0.96163 0.91210 0.93053 1.20737 0.93970 1.42852 0.96306 0.92623 1.25451 0.97692 0.93795 0.99086 1.70017 1.25193 1.42664 1.14744 0.85818 0.80978 0.77339 0.79456 1.19280 1.20725 1.21540 1.22955 0.97981 0.96940 1.05251 1.22952 1.00739 1.06089 0.92885 0.89425 0.87915 0.89957 0.78263 0.88485 0.86906 0.88495 0.84198 0.76507 0.95416 0.89814 0.93205 0.90209 0.90388 0.90033 0.89737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 8.84 71.24 0.63 -2.19 16 2 C 0.03 0.74 5.91 -19.61 -0.12 0.62 16 3 C -0.12 -1.98 9.28 22.23 0.21 -1.78 16 4 C 0.01 0.29 5.89 -19.81 -0.12 0.18 16 5 C -0.14 -1.88 8.80 71.24 0.63 -1.25 16 6 C -0.08 -2.33 6.84 36.34 0.25 -2.08 16 7 N 0.04 1.19 4.45 -46.55 -0.21 0.99 16 8 O -0.23 -8.68 18.44 18.88 0.35 -8.34 16 9 O -0.12 -3.51 15.25 18.89 0.29 -3.22 16 10 C -0.02 -0.71 9.03 22.52 0.20 -0.51 16 11 C -0.15 -4.87 5.87 -20.09 -0.12 -4.99 16 12 C 0.55 21.68 7.74 86.79 0.67 22.35 16 13 O -0.57 -24.35 13.22 -3.88 -0.05 -24.40 16 14 N -0.68 -28.83 5.09 -465.98 -2.37 -31.21 16 15 C 0.18 8.23 4.63 86.38 0.40 8.63 16 16 C 0.00 0.16 2.07 -52.93 -0.11 0.05 16 17 C -0.50 -25.27 8.27 25.60 0.21 -25.06 16 18 H 0.06 2.84 7.82 -2.91 -0.02 2.82 16 19 C 0.04 2.11 5.31 84.65 0.45 2.56 16 20 N -0.89 -46.97 10.21 21.45 0.22 -46.75 16 21 Si 0.94 42.22 29.54 68.60 2.03 44.24 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 25 C -0.19 -8.07 9.96 30.62 0.30 -7.77 16 26 C -0.19 -7.54 9.92 30.62 0.30 -7.24 16 27 H 0.09 1.86 8.14 -2.39 -0.02 1.85 16 28 H 0.10 1.40 8.03 -2.39 -0.02 1.38 16 29 H 0.08 2.45 5.67 -2.39 -0.01 2.44 16 30 H 0.20 1.40 8.04 -2.91 -0.02 1.38 16 31 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.11 0.72 8.03 -2.39 -0.02 0.70 16 33 H 0.10 1.57 5.60 -2.39 -0.01 1.56 16 34 H 0.14 4.98 5.99 -2.91 -0.02 4.96 16 35 H 0.40 16.92 5.99 -92.71 -0.56 16.36 16 36 H 0.03 1.25 8.05 -2.39 -0.02 1.23 16 37 H 0.08 4.44 5.95 -2.39 -0.01 4.43 16 38 H 0.26 13.40 8.32 -92.71 -0.77 12.63 16 39 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 40 H 0.08 3.28 8.14 -2.38 -0.02 3.26 16 41 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 42 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -61.83 352.22 4.56 -57.27 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: 0.52 Total: 29.89 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: 3.80 Total: -18.47 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -2.36 Total: -76.97 kcal Atomic # 8 Polarization: -36.54 SS G_CDS: 0.58 Total: -35.96 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.24 kcal Total: -61.83 4.56 -57.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421533216.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.508 kcal (2) G-P(sol) polarization free energy of solvation -61.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds