Wall clock time and date at job start Tue Mar 31 2020 13:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 120.00205 * 2 1 4 4 N 1.46496 * 109.47174 * 125.00006 * 3 2 1 5 5 C 1.46505 * 120.00112 * 273.02200 * 4 3 2 6 6 C 1.50701 * 109.46759 * 269.99964 * 5 4 3 7 7 H 1.07998 * 120.00534 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99980 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99743 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99954 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46799 * 90.00519 * 10 8 6 12 12 H 1.48497 * 109.47053 * 209.99945 * 10 8 6 13 13 H 1.48494 * 109.47117 * 330.00624 * 10 8 6 14 14 C 1.34777 * 120.00018 * 93.01645 * 4 3 2 15 15 O 1.21553 * 119.99681 * 185.88156 * 14 4 3 16 16 C 1.47842 * 119.99857 * 5.88851 * 14 4 3 17 17 C 1.39592 * 120.14426 * 53.97489 * 16 14 4 18 18 C 1.37935 * 119.85266 * 179.97438 * 17 16 14 19 19 N 1.48013 * 119.92901 * 179.97438 * 18 17 16 20 20 O 1.21803 * 120.00305 * 142.66647 * 19 18 17 21 21 O 1.21806 * 120.00169 * 322.66373 * 19 18 17 22 22 C 1.38383 * 120.14844 * 359.97088 * 18 17 16 23 23 C 1.50694 * 119.85673 * 180.02562 * 22 18 17 24 24 C 1.38341 * 120.28497 * 0.27812 * 22 18 17 25 25 C 1.37979 * 120.14786 * 359.49082 * 24 22 18 26 26 C 1.50702 * 120.07386 * 180.24568 * 25 24 22 27 27 H 1.07999 * 119.99872 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00470 * 180.02562 * 1 2 3 29 29 H 1.07999 * 119.99872 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.46792 * 5.00025 * 3 2 1 31 31 H 1.08994 * 109.47209 * 245.00015 * 3 2 1 32 32 H 1.09000 * 109.46848 * 29.99604 * 5 4 3 33 33 H 1.08998 * 109.47250 * 149.99963 * 5 4 3 34 34 H 0.96995 * 119.99665 * 179.97438 * 9 8 6 35 35 H 1.08001 * 120.07694 * 359.95195 * 17 16 14 36 36 H 1.08998 * 109.47203 * 84.19523 * 23 22 18 37 37 H 1.09008 * 109.47155 * 204.19509 * 23 22 18 38 38 H 1.09001 * 109.46981 * 324.18940 * 23 22 18 39 39 H 1.08002 * 119.92283 * 179.74222 * 24 22 18 40 40 H 1.08990 * 109.47209 * 264.10355 * 26 25 24 41 41 H 1.09000 * 109.46584 * 24.10417 * 26 25 24 42 42 H 1.09000 * 109.46555 * 144.09596 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5397 1.8032 2.4421 6 6 2.7649 3.2896 2.5470 7 1 3.2028 3.8292 1.7203 8 6 2.4118 3.9608 3.6985 9 7 1.8790 3.3037 4.7055 10 14 2.6916 5.8032 3.8287 11 1 1.4889 6.5224 3.3372 12 1 2.9407 6.1669 5.2468 13 1 3.8673 6.1847 3.0058 14 6 4.2674 0.9228 0.9665 15 8 5.0092 0.8434 1.9261 16 6 4.7620 0.5708 -0.3815 17 6 4.6383 1.4803 -1.4332 18 6 5.1023 1.1459 -2.6883 19 7 4.9714 2.1088 -3.8048 20 8 5.8578 2.2030 -4.6350 21 8 3.9773 2.8069 -3.8936 22 6 5.6901 -0.0878 -2.9061 23 6 6.1954 -0.4461 -4.2798 24 6 5.8112 -0.9957 -1.8693 25 6 5.3554 -0.6718 -0.6078 26 6 5.4932 -1.6599 0.5217 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5401 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 1.4775 1.5876 2.5577 33 1 3.1012 1.2945 3.2257 34 1 1.6309 3.7758 5.5156 35 1 4.1798 2.4436 -1.2647 36 1 7.2003 -0.0456 -4.4133 37 1 6.2194 -1.5307 -4.3867 38 1 5.5319 -0.0214 -5.0332 39 1 6.2672 -1.9585 -2.0467 40 1 4.5647 -2.2205 0.6292 41 1 6.3102 -2.3481 0.3047 42 1 5.7045 -1.1256 1.4479 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421908711.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:49 Heat of formation + Delta-G solvation = 8.822100 kcal Electronic energy + Delta-G solvation = -27076.317918 eV Core-core repulsion = 23218.521747 eV Total energy + Delta-G solvation = -3857.796171 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.30857 -40.50163 -38.54773 -36.60725 -35.95672 -33.99724 -33.26473 -32.96457 -32.08238 -29.05583 -28.22825 -27.28929 -25.85424 -25.03311 -23.39517 -22.87508 -21.40068 -20.23055 -19.77314 -18.76764 -17.97076 -17.77200 -16.63984 -16.40055 -16.00477 -15.83349 -15.56294 -14.74963 -14.56439 -14.30330 -14.17535 -13.99297 -13.47609 -13.33574 -12.95091 -12.83474 -12.46939 -12.36912 -12.20814 -12.00943 -11.89513 -11.62876 -11.57072 -11.39305 -11.18112 -11.14503 -11.03585 -10.96536 -10.68607 -10.28298 -9.77882 -9.53636 -9.35876 -9.30567 -9.04585 -8.51681 -7.90386 -6.13589 -4.19372 -0.11071 0.56248 1.06577 1.32208 2.36036 2.75823 3.25930 3.28762 3.32981 3.37173 3.64741 4.11404 4.12904 4.35442 4.40635 4.58124 4.71444 4.89388 5.01756 5.13717 5.18949 5.21220 5.22055 5.28934 5.35688 5.44235 5.48898 5.53914 5.59712 5.72109 5.82654 5.94015 6.03555 6.09872 6.19368 6.38856 6.71497 6.79836 6.93182 7.27705 7.35970 7.58813 7.81405 8.09972 8.12992 8.64147 8.86358 9.46322 10.94483 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012744 B = 0.004296 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.662685 B = 6515.420984 C = 7084.041109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.168 4.168 3 C 0.125 3.875 4 N -0.579 5.579 5 C 0.247 3.753 6 C -0.533 4.533 7 H 0.058 0.942 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.898 3.102 11 H -0.279 1.279 12 H -0.284 1.284 13 H -0.274 1.274 14 C 0.553 3.447 15 O -0.523 6.523 16 C -0.115 4.115 17 C -0.024 4.024 18 C -0.053 4.053 19 N 0.029 4.971 20 O -0.155 6.155 21 O -0.155 6.155 22 C -0.012 4.012 23 C -0.124 4.124 24 C -0.125 4.125 25 C 0.010 3.990 26 C -0.139 4.139 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.037 0.963 33 H 0.047 0.953 34 H 0.265 0.735 35 H 0.155 0.845 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.150 0.850 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.101 -11.712 -15.297 19.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.187 4.187 3 C 0.001 3.999 4 N -0.309 5.309 5 C 0.128 3.872 6 C -0.572 4.572 7 H 0.076 0.924 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.725 3.275 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.199 1.199 14 C 0.338 3.662 15 O -0.401 6.401 16 C -0.119 4.119 17 C -0.043 4.043 18 C -0.136 4.136 19 N 0.551 4.449 20 O -0.373 6.373 21 O -0.372 6.372 22 C -0.013 4.013 23 C -0.181 4.181 24 C -0.144 4.144 25 C 0.009 3.991 26 C -0.195 4.195 27 H 0.119 0.881 28 H 0.114 0.886 29 H 0.120 0.880 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.173 0.827 36 H 0.113 0.887 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.167 0.833 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.460 -12.170 -14.003 19.081 hybrid contribution -0.063 1.392 -0.196 1.407 sum 4.397 -10.779 -14.199 18.361 Atomic orbital electron populations 1.23838 0.95742 1.01940 0.99947 1.23296 0.96382 0.98611 1.00450 1.20856 0.93270 0.95997 0.89740 1.48246 1.08366 1.61083 1.13199 1.19390 0.95645 0.94644 0.77496 1.21390 1.42007 0.92674 1.01100 0.92413 1.24911 0.94830 0.98749 0.95319 1.69927 1.41858 1.36109 1.05112 0.86493 0.78643 0.84870 0.77446 1.20465 1.20995 1.19862 1.17844 0.83043 0.78586 0.86726 1.90764 1.55602 1.53390 1.40297 1.20110 1.02364 0.94584 0.94815 1.21042 0.93372 1.00900 0.89003 1.20668 1.12835 0.92246 0.87838 1.43537 0.99736 1.00337 1.01335 1.94508 1.34076 1.72775 1.35897 1.94582 1.20387 1.41462 1.80803 1.19803 0.92851 0.90602 0.98093 1.21042 1.03059 1.02840 0.91135 1.20920 1.02641 1.00094 0.90732 1.20343 0.90248 0.93209 0.95299 1.21182 1.02948 0.97654 0.97730 0.88089 0.88633 0.87977 0.88907 0.90486 0.94486 0.93455 0.92576 0.82698 0.88704 0.90254 0.90793 0.83273 0.89952 0.90603 0.87915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.27 14.32 29.01 0.42 -1.85 16 2 C -0.17 -2.39 9.85 -36.02 -0.35 -2.74 16 3 C 0.12 2.02 5.65 -5.19 -0.03 1.99 16 4 N -0.58 -11.68 2.44 -177.55 -0.43 -12.12 16 5 C 0.25 6.16 5.22 -5.19 -0.03 6.14 16 6 C -0.53 -14.59 9.39 -34.44 -0.32 -14.91 16 7 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 8 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -25.77 13.29 55.43 0.74 -25.04 16 10 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 14 C 0.55 10.88 6.56 -12.33 -0.08 10.80 16 15 O -0.52 -12.18 14.67 5.32 0.08 -12.10 16 16 C -0.11 -1.76 4.94 -104.97 -0.52 -2.28 16 17 C -0.02 -0.35 7.10 -39.19 -0.28 -0.62 16 18 C -0.05 -0.72 6.47 -80.01 -0.52 -1.24 16 19 N 0.03 0.42 4.13 33.93 0.14 0.56 16 20 O -0.16 -2.22 16.76 -29.46 -0.49 -2.71 16 21 O -0.16 -2.44 18.94 -29.46 -0.56 -2.99 16 22 C -0.01 -0.13 5.88 -104.53 -0.61 -0.74 16 23 C -0.12 -1.02 8.62 36.00 0.31 -0.71 16 24 C -0.13 -1.22 9.29 -39.64 -0.37 -1.58 16 25 C 0.01 0.12 5.91 -104.23 -0.62 -0.49 16 26 C -0.14 -1.55 9.51 36.01 0.34 -1.21 16 27 H 0.10 1.28 7.84 -52.49 -0.41 0.87 16 28 H 0.10 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.10 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.09 1.55 7.75 -51.93 -0.40 1.15 16 31 H 0.08 1.13 4.35 -51.93 -0.23 0.90 16 32 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 33 H 0.05 1.33 7.35 -51.93 -0.38 0.95 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.16 2.36 7.42 -52.49 -0.39 1.97 16 36 H 0.09 0.73 8.13 -51.93 -0.42 0.31 16 37 H 0.08 0.45 8.04 -51.92 -0.42 0.03 16 38 H 0.07 0.68 6.92 -51.93 -0.36 0.32 16 39 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.08 0.62 8.05 -51.93 -0.42 0.20 16 42 H 0.10 1.49 5.93 -51.93 -0.31 1.18 16 LS Contribution 363.53 15.07 5.48 5.48 Total: -1.00 -31.65 363.53 -8.22 -39.87 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -5.39 Total: 0.34 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -2.76 Total: -7.75 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.44 Total: -36.59 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.97 Total: -17.81 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.65 -8.22 -39.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421908711.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.692 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds