Wall clock time and date at job start Tue Mar 31 2020 13:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 120.00205 * 2 1 4 4 N 1.46496 * 109.47174 * 125.00006 * 3 2 1 5 5 C 1.46505 * 120.00112 * 273.02200 * 4 3 2 6 6 C 1.50701 * 109.46759 * 269.99964 * 5 4 3 7 7 H 1.07998 * 120.00534 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99980 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99743 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99954 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46799 * 90.00519 * 10 8 6 12 12 H 1.48497 * 109.47053 * 209.99945 * 10 8 6 13 13 H 1.48494 * 109.47117 * 330.00624 * 10 8 6 14 14 C 1.34777 * 120.00018 * 93.01645 * 4 3 2 15 15 O 1.21553 * 119.99681 * 185.88156 * 14 4 3 16 16 C 1.47842 * 119.99857 * 5.88851 * 14 4 3 17 17 C 1.39592 * 120.14426 * 53.97489 * 16 14 4 18 18 C 1.37935 * 119.85266 * 179.97438 * 17 16 14 19 19 N 1.48013 * 119.92901 * 179.97438 * 18 17 16 20 20 O 1.21803 * 120.00305 * 142.66647 * 19 18 17 21 21 O 1.21806 * 120.00169 * 322.66373 * 19 18 17 22 22 C 1.38383 * 120.14844 * 359.97088 * 18 17 16 23 23 C 1.50694 * 119.85673 * 180.02562 * 22 18 17 24 24 C 1.38341 * 120.28497 * 0.27812 * 22 18 17 25 25 C 1.37979 * 120.14786 * 359.49082 * 24 22 18 26 26 C 1.50702 * 120.07386 * 180.24568 * 25 24 22 27 27 H 1.07999 * 119.99872 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00470 * 180.02562 * 1 2 3 29 29 H 1.07999 * 119.99872 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.46792 * 5.00025 * 3 2 1 31 31 H 1.08994 * 109.47209 * 245.00015 * 3 2 1 32 32 H 1.09000 * 109.46848 * 29.99604 * 5 4 3 33 33 H 1.08998 * 109.47250 * 149.99963 * 5 4 3 34 34 H 0.96995 * 119.99665 * 179.97438 * 9 8 6 35 35 H 1.08001 * 120.07694 * 359.95195 * 17 16 14 36 36 H 1.08998 * 109.47203 * 84.19523 * 23 22 18 37 37 H 1.09008 * 109.47155 * 204.19509 * 23 22 18 38 38 H 1.09001 * 109.46981 * 324.18940 * 23 22 18 39 39 H 1.08002 * 119.92283 * 179.74222 * 24 22 18 40 40 H 1.08990 * 109.47209 * 264.10355 * 26 25 24 41 41 H 1.09000 * 109.46584 * 24.10417 * 26 25 24 42 42 H 1.09000 * 109.46555 * 144.09596 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5397 1.8032 2.4421 6 6 2.7649 3.2896 2.5470 7 1 3.2028 3.8292 1.7203 8 6 2.4118 3.9608 3.6985 9 7 1.8790 3.3037 4.7055 10 14 2.6916 5.8032 3.8287 11 1 1.4889 6.5224 3.3372 12 1 2.9407 6.1669 5.2468 13 1 3.8673 6.1847 3.0058 14 6 4.2674 0.9228 0.9665 15 8 5.0092 0.8434 1.9261 16 6 4.7620 0.5708 -0.3815 17 6 4.6383 1.4803 -1.4332 18 6 5.1023 1.1459 -2.6883 19 7 4.9714 2.1088 -3.8048 20 8 5.8578 2.2030 -4.6350 21 8 3.9773 2.8069 -3.8936 22 6 5.6901 -0.0878 -2.9061 23 6 6.1954 -0.4461 -4.2798 24 6 5.8112 -0.9957 -1.8693 25 6 5.3554 -0.6718 -0.6078 26 6 5.4932 -1.6599 0.5217 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5401 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 1.4775 1.5876 2.5577 33 1 3.1012 1.2945 3.2257 34 1 1.6309 3.7758 5.5156 35 1 4.1798 2.4436 -1.2647 36 1 7.2003 -0.0456 -4.4133 37 1 6.2194 -1.5307 -4.3867 38 1 5.5319 -0.0214 -5.0332 39 1 6.2672 -1.9585 -2.0467 40 1 4.5647 -2.2205 0.6292 41 1 6.3102 -2.3481 0.3047 42 1 5.7045 -1.1256 1.4479 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421908711.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:48 Heat of formation + Delta-G solvation = -8.036255 kcal Electronic energy + Delta-G solvation = -27077.048951 eV Core-core repulsion = 23218.521747 eV Total energy + Delta-G solvation = -3858.527204 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.41974 -41.75473 -39.86730 -37.74952 -37.46852 -35.27918 -34.84932 -34.04005 -33.60071 -30.35302 -29.46676 -28.54299 -27.20247 -26.30882 -25.04233 -23.97265 -22.53639 -21.52702 -20.97151 -19.89245 -19.31447 -18.91002 -18.65744 -17.81671 -17.44713 -17.08800 -16.64088 -16.34912 -15.92372 -15.54807 -15.29118 -15.00150 -14.69573 -14.40175 -14.27304 -14.21071 -13.62040 -13.42392 -13.34848 -13.24840 -13.15469 -13.00943 -12.85891 -12.75964 -12.70775 -12.60941 -12.33694 -12.29259 -12.28697 -12.09505 -11.75327 -10.94203 -10.69078 -10.51862 -10.38842 -10.13760 -9.61794 -8.28419 -6.43119 -1.18174 -0.47718 0.00406 0.24861 1.21268 1.33720 1.35513 1.44865 1.52124 2.05599 2.19268 2.36484 3.01831 3.14033 3.17452 3.38907 3.49306 3.69757 3.91614 3.97172 4.09160 4.21221 4.25943 4.32428 4.46295 4.48579 4.62649 4.64180 4.70525 4.87443 4.91656 4.96642 4.97227 5.02695 5.09447 5.14513 5.23686 5.39367 5.42815 5.61126 5.67772 5.83925 5.97664 6.42695 6.48888 6.64698 7.08603 7.29329 8.79005 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012744 B = 0.004296 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.662685 B = 6515.420984 C = 7084.041109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.186 4.186 3 C 0.125 3.875 4 N -0.585 5.585 5 C 0.265 3.735 6 C -0.549 4.549 7 H 0.050 0.950 8 C 0.016 3.984 9 N -0.922 5.922 10 Si 0.963 3.037 11 H -0.264 1.264 12 H -0.278 1.278 13 H -0.276 1.276 14 C 0.551 3.449 15 O -0.570 6.570 16 C -0.134 4.134 17 C -0.032 4.032 18 C -0.065 4.065 19 N 0.030 4.970 20 O -0.130 6.130 21 O -0.202 6.202 22 C 0.003 3.997 23 C -0.126 4.126 24 C -0.101 4.101 25 C 0.014 3.986 26 C -0.138 4.138 27 H 0.099 0.901 28 H 0.122 0.878 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.026 0.974 33 H 0.008 0.992 34 H 0.269 0.731 35 H 0.136 0.864 36 H 0.106 0.894 37 H 0.117 0.883 38 H 0.063 0.937 39 H 0.202 0.798 40 H 0.092 0.908 41 H 0.116 0.884 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.188 -13.676 -17.758 23.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.205 4.205 3 C 0.003 3.997 4 N -0.314 5.314 5 C 0.145 3.855 6 C -0.588 4.588 7 H 0.068 0.932 8 C -0.184 4.184 9 N -0.561 5.561 10 Si 0.787 3.213 11 H -0.189 1.189 12 H -0.203 1.203 13 H -0.201 1.201 14 C 0.339 3.661 15 O -0.451 6.451 16 C -0.138 4.138 17 C -0.052 4.052 18 C -0.148 4.148 19 N 0.550 4.450 20 O -0.356 6.356 21 O -0.408 6.408 22 C 0.001 3.999 23 C -0.182 4.182 24 C -0.119 4.119 25 C 0.013 3.987 26 C -0.194 4.194 27 H 0.117 0.883 28 H 0.141 0.859 29 H 0.132 0.868 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.044 0.956 33 H 0.026 0.974 34 H 0.078 0.922 35 H 0.154 0.846 36 H 0.124 0.876 37 H 0.135 0.865 38 H 0.082 0.918 39 H 0.219 0.781 40 H 0.110 0.890 41 H 0.134 0.866 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.432 -14.102 -16.479 22.359 hybrid contribution -0.314 1.899 0.500 1.989 sum 5.117 -12.202 -15.979 20.746 Atomic orbital electron populations 1.24086 0.95312 1.03163 0.97422 1.23210 0.96859 0.97750 1.02680 1.20984 0.92729 0.97127 0.88860 1.48166 1.09642 1.61071 1.12529 1.18793 0.94188 0.93323 0.79222 1.21654 1.42048 0.93922 1.01167 0.93150 1.25758 0.94397 1.03385 0.94891 1.70031 1.42533 1.37951 1.05630 0.85483 0.78814 0.79384 0.77570 1.18869 1.20273 1.20089 1.18461 0.82167 0.77244 0.88223 1.90724 1.56616 1.55244 1.42523 1.19665 1.05116 0.96752 0.92274 1.20782 0.94351 1.00256 0.89802 1.20758 1.14125 0.93116 0.86754 1.43697 0.99445 1.00334 1.01541 1.94469 1.33496 1.71879 1.35790 1.94597 1.21258 1.43111 1.81828 1.20301 0.90642 0.89034 0.99925 1.21199 1.02947 1.05426 0.88594 1.21394 1.00559 1.01439 0.88534 1.20594 0.89178 0.91905 0.97034 1.21205 1.04998 0.97644 0.95542 0.88286 0.85948 0.86803 0.90162 0.88996 0.95580 0.97430 0.92219 0.84627 0.87615 0.86459 0.91804 0.78117 0.88965 0.86559 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 14.32 67.78 0.97 -3.04 16 2 C -0.19 -5.27 9.85 25.65 0.25 -5.02 16 3 C 0.12 4.25 5.65 85.64 0.48 4.74 16 4 N -0.59 -25.12 2.44 -833.93 -2.03 -27.16 16 5 C 0.27 14.17 5.22 85.63 0.45 14.62 16 6 C -0.55 -31.58 9.39 25.60 0.24 -31.34 16 7 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 8 C 0.02 0.89 5.46 84.65 0.46 1.36 16 9 N -0.92 -55.02 13.29 21.45 0.28 -54.74 16 10 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 11 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 14 C 0.55 22.97 6.56 86.79 0.57 23.54 16 15 O -0.57 -28.44 14.67 -3.88 -0.06 -28.49 16 16 C -0.13 -4.16 4.94 -20.09 -0.10 -4.26 16 17 C -0.03 -0.96 7.10 22.52 0.16 -0.80 16 18 C -0.07 -1.66 6.47 36.34 0.24 -1.43 16 19 N 0.03 0.86 4.13 -46.55 -0.19 0.67 16 20 O -0.13 -3.49 16.76 18.88 0.32 -3.17 16 21 O -0.20 -6.51 18.94 18.88 0.36 -6.15 16 22 C 0.00 0.04 5.88 -19.81 -0.12 -0.07 16 23 C -0.13 -1.44 8.62 71.23 0.61 -0.82 16 24 C -0.10 -1.48 9.29 22.23 0.21 -1.27 16 25 C 0.01 0.31 5.91 -19.61 -0.12 0.20 16 26 C -0.14 -2.81 9.51 71.24 0.68 -2.13 16 27 H 0.10 2.48 7.84 -2.91 -0.02 2.46 16 28 H 0.12 2.38 8.06 -2.91 -0.02 2.36 16 29 H 0.11 2.94 8.06 -2.91 -0.02 2.92 16 30 H 0.08 2.87 7.75 -2.39 -0.02 2.85 16 31 H 0.09 2.83 4.35 -2.39 -0.01 2.82 16 32 H 0.03 1.42 8.07 -2.39 -0.02 1.41 16 33 H 0.01 0.46 7.35 -2.39 -0.02 0.44 16 34 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 35 H 0.14 4.47 7.42 -2.91 -0.02 4.44 16 36 H 0.11 1.10 8.13 -2.39 -0.02 1.08 16 37 H 0.12 0.52 8.04 -2.38 -0.02 0.50 16 38 H 0.06 0.92 6.92 -2.39 -0.02 0.91 16 39 H 0.20 0.95 8.06 -2.91 -0.02 0.93 16 40 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.12 1.39 8.05 -2.39 -0.02 1.38 16 42 H 0.06 1.88 5.93 -2.39 -0.01 1.86 16 Total: -1.00 -74.35 363.53 6.73 -67.62 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 1.04 Total: 10.13 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 4.99 Total: -5.74 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -1.94 Total: -81.22 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: 0.62 Total: -37.81 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -74.35 6.73 -67.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421908711.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.583 kcal (2) G-P(sol) polarization free energy of solvation -74.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds