Wall clock time and date at job start Tue Mar 31 2020 12:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00127 * 2 1 4 4 H 1.48497 * 109.47051 * 270.00028 * 3 2 1 5 5 H 1.48497 * 109.46872 * 30.00083 * 3 2 1 6 6 H 1.48497 * 109.47020 * 149.99601 * 3 2 1 7 7 C 1.37885 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99824 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99804 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.46949 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99925 * 180.02562 * 10 9 7 12 12 O 1.21364 * 120.00001 * 359.97438 * 11 10 9 13 13 C 1.49334 * 119.99974 * 180.02562 * 11 10 9 14 14 O 1.21389 * 119.99976 * 359.97438 * 13 11 10 15 15 N 1.34776 * 119.99974 * 180.02562 * 13 11 10 16 16 C 1.39883 * 119.99776 * 185.53232 * 15 13 11 17 17 C 1.38795 * 120.09862 * 24.80982 * 16 15 13 18 18 C 1.38163 * 119.97866 * 180.02562 * 17 16 15 19 19 C 1.38303 * 120.17138 * 0.02562 * 18 17 16 20 20 C 1.38242 * 120.19792 * 359.72067 * 19 18 17 21 21 C 1.38551 * 120.01644 * 0.55793 * 20 19 18 22 22 O 1.35953 * 120.08645 * 179.71621 * 21 20 19 23 23 C 1.42899 * 117.00211 * 359.73100 * 22 21 20 24 24 C 1.53006 * 109.47414 * 179.97438 * 23 22 21 25 25 C 1.52995 * 117.49992 * 184.99789 * 24 23 22 26 26 C 1.52999 * 117.50045 * 116.37358 * 24 23 22 27 27 H 0.96997 * 120.00376 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47239 * 60.00117 * 9 7 2 29 29 H 1.09003 * 109.47154 * 299.99544 * 9 7 2 30 30 H 0.96999 * 120.00032 * 359.97438 * 10 9 7 31 31 H 0.96992 * 120.00260 * 5.51966 * 15 13 11 32 32 H 1.07995 * 120.00953 * 0.05257 * 17 16 15 33 33 H 1.07996 * 119.91565 * 179.97438 * 18 17 16 34 34 H 1.08001 * 119.90023 * 180.02562 * 19 18 17 35 35 H 1.07998 * 119.99269 * 180.29588 * 20 19 18 36 36 H 1.08991 * 109.47654 * 59.99353 * 23 22 21 37 37 H 1.09005 * 109.46758 * 299.99291 * 23 22 21 38 38 H 1.08997 * 115.55572 * 330.68376 * 24 23 22 39 39 H 1.08992 * 117.50206 * 145.02232 * 25 24 23 40 40 H 1.09006 * 117.49811 * 359.97438 * 25 24 23 41 41 H 1.09002 * 117.49950 * 0.02562 * 26 24 23 42 42 H 1.09003 * 117.51669 * 214.97521 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0022 11 6 5.3249 -2.8216 0.0034 12 8 6.1135 -1.8991 0.0031 13 6 5.8227 -4.2295 0.0040 14 8 5.0338 -5.1522 0.0038 15 7 7.1477 -4.4758 0.0057 16 6 7.6151 -5.7891 -0.1106 17 6 6.8301 -6.7556 -0.7238 18 6 7.2940 -8.0521 -0.8368 19 6 8.5395 -8.3905 -0.3398 20 6 9.3295 -7.4324 0.2677 21 6 8.8699 -6.1312 0.3906 22 8 9.6433 -5.1892 0.9929 23 6 10.9177 -5.6118 1.4820 24 6 11.6383 -4.4234 2.1217 25 6 13.0736 -4.6435 2.6036 26 6 11.9386 -4.5023 3.6199 27 1 -0.4850 0.8400 -0.0004 28 1 3.8745 -0.6801 0.8912 29 1 3.8752 -0.6805 -0.8889 30 1 3.3695 -3.3126 0.0029 31 1 7.7772 -3.7424 0.0874 32 1 5.8572 -6.4941 -1.1129 33 1 6.6822 -8.8034 -1.3138 34 1 8.8980 -9.4052 -0.4308 35 1 10.3035 -7.6993 0.6505 36 1 11.5149 -5.9963 0.6553 37 1 10.7793 -6.3965 2.2259 38 1 11.3904 -3.4455 1.7089 39 1 13.7700 -3.8106 2.5080 40 1 13.5044 -5.6353 2.4654 41 1 11.6231 -5.4011 4.1497 42 1 11.8884 -3.5765 4.1930 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427890721.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:39 Heat of formation + Delta-G solvation = -48.630890 kcal Electronic energy + Delta-G solvation = -25409.352870 eV Core-core repulsion = 21549.065350 eV Total energy + Delta-G solvation = -3860.287519 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.11645 -39.97200 -38.54752 -37.81083 -36.82279 -35.26731 -34.26153 -32.39700 -30.46443 -29.98065 -28.37901 -27.73233 -24.97282 -23.14561 -22.84096 -22.36441 -21.58386 -20.84761 -19.96701 -18.95132 -18.25710 -17.40342 -16.85660 -16.52937 -16.09566 -15.77461 -15.67009 -15.29143 -15.05400 -14.84482 -14.50459 -14.27557 -14.00896 -13.97225 -13.24774 -13.18092 -13.04899 -12.44748 -12.25058 -12.11365 -12.02881 -11.92418 -11.64863 -11.44779 -11.18505 -11.01029 -10.92505 -10.83055 -10.63303 -10.39547 -10.02756 -9.55930 -9.23644 -8.85430 -8.78230 -8.39432 -7.96929 -6.24815 -4.28563 0.95843 1.20551 1.82211 2.53634 2.73064 3.23667 3.30927 3.36192 3.36965 3.43733 3.70178 3.98752 4.24077 4.29033 4.39597 4.49979 4.62223 4.67893 4.77503 4.87717 4.94795 5.07319 5.08241 5.09433 5.18472 5.23015 5.34060 5.45075 5.59320 5.65306 5.75498 5.88612 6.04449 6.25400 6.37038 6.60379 6.62334 6.87400 6.92562 7.08066 7.17634 7.26300 7.73735 8.02477 8.35325 8.48860 8.75557 9.32675 10.86926 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014414 B = 0.002778 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.103433 B =10076.000385 C =11779.644611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.548 4.548 8 H 0.083 0.917 9 C 0.218 3.782 10 N -0.664 5.664 11 C 0.494 3.506 12 O -0.536 6.536 13 C 0.509 3.491 14 O -0.503 6.503 15 N -0.638 5.638 16 C 0.124 3.876 17 C -0.095 4.095 18 C -0.133 4.133 19 C -0.100 4.100 20 C -0.191 4.191 21 C 0.103 3.897 22 O -0.312 6.312 23 C 0.095 3.905 24 C -0.159 4.159 25 C -0.170 4.170 26 C -0.175 4.175 27 H 0.269 0.731 28 H 0.033 0.967 29 H 0.029 0.971 30 H 0.410 0.590 31 H 0.426 0.574 32 H 0.155 0.845 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.130 0.870 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.119 0.881 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.874 -15.400 2.153 29.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.586 4.586 8 H 0.101 0.899 9 C 0.096 3.904 10 N -0.313 5.313 11 C 0.273 3.727 12 O -0.415 6.415 13 C 0.292 3.708 14 O -0.377 6.377 15 N -0.284 5.284 16 C 0.029 3.971 17 C -0.115 4.115 18 C -0.152 4.152 19 C -0.119 4.119 20 C -0.210 4.210 21 C 0.056 3.944 22 O -0.226 6.226 23 C 0.020 3.980 24 C -0.177 4.177 25 C -0.207 4.207 26 C -0.212 4.212 27 H 0.079 0.921 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.246 0.754 31 H 0.264 0.736 32 H 0.172 0.828 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.137 0.863 39 H 0.119 0.881 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 24.574 -14.967 2.188 28.856 hybrid contribution 0.498 0.689 0.096 0.855 sum 25.072 -14.278 2.284 28.942 Atomic orbital electron populations 1.69870 1.06206 1.27532 1.48899 1.24781 0.94813 0.99120 0.93774 0.86823 0.80560 0.83235 0.79107 1.19740 1.20782 1.18472 1.21049 0.88104 0.95547 1.53871 0.89890 1.19718 0.95804 0.77412 0.97439 1.46105 1.04875 1.12285 1.68078 1.19696 0.84658 0.87981 0.80373 1.90733 1.55347 1.45095 1.50365 1.20726 0.82395 0.90909 0.76814 1.90707 1.55186 1.45591 1.46232 1.43036 1.07672 1.07619 1.70065 1.17165 0.92298 0.85625 1.02021 1.21381 1.00858 0.92144 0.97156 1.21002 0.96309 0.96117 1.01792 1.20934 0.94201 0.98950 0.97845 1.21008 1.01680 0.91990 1.06322 1.18635 0.91039 0.88600 0.96166 1.86013 1.29081 1.35643 1.71878 1.22286 0.82057 0.95962 0.97727 1.22121 0.97946 1.00172 0.97429 1.22990 0.90748 1.03445 1.03495 1.23112 1.02542 1.03856 0.91713 0.92127 0.94908 0.95339 0.75370 0.73553 0.82797 0.85342 0.85710 0.85253 0.91511 0.91805 0.86307 0.88100 0.88562 0.88526 0.88247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.96 55.43 0.77 -25.43 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 3 Si 0.88 20.96 27.47 -169.99 -4.67 16.29 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 7 C -0.55 -14.96 9.83 -34.44 -0.34 -15.29 16 8 H 0.08 2.38 7.84 -52.49 -0.41 1.97 16 9 C 0.22 5.26 4.50 -5.19 -0.02 5.24 16 10 N -0.66 -13.91 5.54 -61.95 -0.34 -14.25 16 11 C 0.49 9.64 7.89 -11.64 -0.09 9.55 16 12 O -0.54 -11.41 16.48 5.48 0.09 -11.32 16 13 C 0.51 8.63 7.69 -11.64 -0.09 8.54 16 14 O -0.50 -8.97 13.64 5.46 0.07 -8.89 16 15 N -0.64 -9.39 5.27 -10.19 -0.05 -9.45 16 16 C 0.12 1.69 6.44 -83.56 -0.54 1.15 16 17 C -0.10 -1.24 8.71 -39.40 -0.34 -1.59 16 18 C -0.13 -1.39 10.04 -39.58 -0.40 -1.78 16 19 C -0.10 -0.91 10.04 -39.56 -0.40 -1.31 16 20 C -0.19 -1.81 9.04 -39.46 -0.36 -2.17 16 21 C 0.10 1.21 6.70 -39.04 -0.26 0.95 16 22 O -0.31 -3.51 9.55 -19.59 -0.19 -3.70 16 23 C 0.09 0.75 5.02 37.16 0.19 0.94 16 24 C -0.16 -1.19 6.06 -90.62 -0.55 -1.74 16 25 C -0.17 -0.95 10.25 -26.73 -0.27 -1.22 16 26 C -0.18 -1.15 10.18 -26.73 -0.27 -1.43 16 27 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.03 0.82 7.20 -51.93 -0.37 0.45 16 29 H 0.03 0.70 7.57 -51.93 -0.39 0.31 16 30 H 0.41 8.14 7.79 -40.82 -0.32 7.82 16 31 H 0.43 5.96 7.82 -40.82 -0.32 5.64 16 32 H 0.15 2.19 5.79 -52.49 -0.30 1.89 16 33 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 35 H 0.13 0.90 6.30 -52.49 -0.33 0.57 16 36 H 0.07 0.44 7.65 -51.93 -0.40 0.04 16 37 H 0.06 0.45 7.41 -51.93 -0.38 0.06 16 38 H 0.12 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.10 0.59 8.03 -51.93 -0.42 0.17 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 360.92 15.07 5.44 5.44 Total: -1.00 -31.42 360.92 -8.07 -39.49 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -5.35 Total: 9.86 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -3.84 Total: 1.97 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.38 Total: -49.13 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.02 Total: -23.91 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.42 -8.07 -39.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427890721.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.140 kcal (2) G-P(sol) polarization free energy of solvation -31.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds