Wall clock time and date at job start Tue Mar 31 2020 12:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00127 * 2 1 4 4 H 1.48497 * 109.47051 * 270.00028 * 3 2 1 5 5 H 1.48497 * 109.46872 * 30.00083 * 3 2 1 6 6 H 1.48497 * 109.47020 * 149.99601 * 3 2 1 7 7 C 1.37885 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99824 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99804 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.46949 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99925 * 180.02562 * 10 9 7 12 12 O 1.21364 * 120.00001 * 359.97438 * 11 10 9 13 13 C 1.49334 * 119.99974 * 180.02562 * 11 10 9 14 14 O 1.21389 * 119.99976 * 359.97438 * 13 11 10 15 15 N 1.34776 * 119.99974 * 180.02562 * 13 11 10 16 16 C 1.39883 * 119.99776 * 185.53232 * 15 13 11 17 17 C 1.38795 * 120.09862 * 24.80982 * 16 15 13 18 18 C 1.38163 * 119.97866 * 180.02562 * 17 16 15 19 19 C 1.38303 * 120.17138 * 0.02562 * 18 17 16 20 20 C 1.38242 * 120.19792 * 359.72067 * 19 18 17 21 21 C 1.38551 * 120.01644 * 0.55793 * 20 19 18 22 22 O 1.35953 * 120.08645 * 179.71621 * 21 20 19 23 23 C 1.42899 * 117.00211 * 359.73100 * 22 21 20 24 24 C 1.53006 * 109.47414 * 179.97438 * 23 22 21 25 25 C 1.52995 * 117.49992 * 184.99789 * 24 23 22 26 26 C 1.52999 * 117.50045 * 116.37358 * 24 23 22 27 27 H 0.96997 * 120.00376 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47239 * 60.00117 * 9 7 2 29 29 H 1.09003 * 109.47154 * 299.99544 * 9 7 2 30 30 H 0.96999 * 120.00032 * 359.97438 * 10 9 7 31 31 H 0.96992 * 120.00260 * 5.51966 * 15 13 11 32 32 H 1.07995 * 120.00953 * 0.05257 * 17 16 15 33 33 H 1.07996 * 119.91565 * 179.97438 * 18 17 16 34 34 H 1.08001 * 119.90023 * 180.02562 * 19 18 17 35 35 H 1.07998 * 119.99269 * 180.29588 * 20 19 18 36 36 H 1.08991 * 109.47654 * 59.99353 * 23 22 21 37 37 H 1.09005 * 109.46758 * 299.99291 * 23 22 21 38 38 H 1.08997 * 115.55572 * 330.68376 * 24 23 22 39 39 H 1.08992 * 117.50206 * 145.02232 * 25 24 23 40 40 H 1.09006 * 117.49811 * 359.97438 * 25 24 23 41 41 H 1.09002 * 117.49950 * 0.02562 * 26 24 23 42 42 H 1.09003 * 117.51669 * 214.97521 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0022 11 6 5.3249 -2.8216 0.0034 12 8 6.1135 -1.8991 0.0031 13 6 5.8227 -4.2295 0.0040 14 8 5.0338 -5.1522 0.0038 15 7 7.1477 -4.4758 0.0057 16 6 7.6151 -5.7891 -0.1106 17 6 6.8301 -6.7556 -0.7238 18 6 7.2940 -8.0521 -0.8368 19 6 8.5395 -8.3905 -0.3398 20 6 9.3295 -7.4324 0.2677 21 6 8.8699 -6.1312 0.3906 22 8 9.6433 -5.1892 0.9929 23 6 10.9177 -5.6118 1.4820 24 6 11.6383 -4.4234 2.1217 25 6 13.0736 -4.6435 2.6036 26 6 11.9386 -4.5023 3.6199 27 1 -0.4850 0.8400 -0.0004 28 1 3.8745 -0.6801 0.8912 29 1 3.8752 -0.6805 -0.8889 30 1 3.3695 -3.3126 0.0029 31 1 7.7772 -3.7424 0.0874 32 1 5.8572 -6.4941 -1.1129 33 1 6.6822 -8.8034 -1.3138 34 1 8.8980 -9.4052 -0.4308 35 1 10.3035 -7.6993 0.6505 36 1 11.5149 -5.9963 0.6553 37 1 10.7793 -6.3965 2.2259 38 1 11.3904 -3.4455 1.7089 39 1 13.7700 -3.8106 2.5080 40 1 13.5044 -5.6353 2.4654 41 1 11.6231 -5.4011 4.1497 42 1 11.8884 -3.5765 4.1930 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427890721.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:39 Heat of formation + Delta-G solvation = -69.988851 kcal Electronic energy + Delta-G solvation = -25410.279020 eV Core-core repulsion = 21549.065350 eV Total energy + Delta-G solvation = -3861.213670 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.27272 -41.07073 -39.81864 -38.71898 -37.50088 -36.72115 -35.80018 -34.43722 -31.33624 -30.90599 -30.25165 -28.41455 -26.43601 -24.36756 -23.52392 -23.26365 -22.88741 -21.69200 -21.29715 -20.27019 -19.27798 -18.63039 -18.45335 -17.58749 -17.23604 -16.97595 -16.95085 -16.56995 -16.06486 -15.98305 -15.76254 -15.35667 -15.21237 -14.95921 -14.79198 -14.44160 -14.18981 -14.00540 -13.81354 -13.17970 -13.02548 -12.71890 -12.70839 -12.50775 -12.39715 -12.29945 -12.00779 -11.92950 -11.71952 -11.69487 -11.40658 -10.94226 -10.91843 -10.69891 -10.21439 -9.64950 -8.89833 -8.40683 -6.50156 -0.13230 0.37447 0.59140 1.20286 1.35581 1.37727 1.49180 1.99783 2.02264 2.28038 2.61277 2.78191 2.85995 2.94088 3.35034 3.66097 3.85807 3.89362 3.98971 4.04243 4.19999 4.24624 4.39078 4.43060 4.48254 4.55890 4.63293 4.72564 4.76642 4.93581 4.99427 5.03665 5.12048 5.18458 5.20874 5.22055 5.22231 5.36769 5.54885 5.79194 5.80804 6.05199 6.32306 6.41288 6.52163 6.66655 6.86783 7.16190 8.74226 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014414 B = 0.002778 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.103433 B =10076.000385 C =11779.644611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.026 3.974 3 Si 0.942 3.058 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.253 1.253 7 C -0.555 4.555 8 H 0.055 0.945 9 C 0.229 3.771 10 N -0.670 5.670 11 C 0.499 3.501 12 O -0.553 6.553 13 C 0.515 3.485 14 O -0.516 6.516 15 N -0.625 5.625 16 C 0.087 3.913 17 C -0.112 4.112 18 C -0.138 4.138 19 C -0.086 4.086 20 C -0.187 4.187 21 C 0.100 3.900 22 O -0.331 6.331 23 C 0.090 3.910 24 C -0.177 4.177 25 C -0.152 4.152 26 C -0.183 4.183 27 H 0.274 0.726 28 H 0.029 0.971 29 H 0.029 0.971 30 H 0.414 0.586 31 H 0.428 0.572 32 H 0.134 0.866 33 H 0.149 0.851 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.014 -16.813 2.352 32.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.175 4.175 3 Si 0.765 3.235 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.177 1.177 7 C -0.593 4.593 8 H 0.073 0.927 9 C 0.106 3.894 10 N -0.319 5.319 11 C 0.279 3.721 12 O -0.432 6.432 13 C 0.297 3.703 14 O -0.392 6.392 15 N -0.270 5.270 16 C -0.007 4.007 17 C -0.132 4.132 18 C -0.157 4.157 19 C -0.105 4.105 20 C -0.206 4.206 21 C 0.053 3.947 22 O -0.246 6.246 23 C 0.016 3.984 24 C -0.195 4.195 25 C -0.189 4.189 26 C -0.220 4.220 27 H 0.083 0.917 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.251 0.749 31 H 0.266 0.734 32 H 0.152 0.848 33 H 0.167 0.833 34 H 0.180 0.820 35 H 0.179 0.821 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.131 0.869 41 H 0.121 0.879 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 27.759 -16.416 2.386 32.338 hybrid contribution -0.383 0.977 0.048 1.051 sum 27.376 -15.439 2.434 31.524 Atomic orbital electron populations 1.69987 1.07903 1.28825 1.50161 1.25657 0.95611 1.02918 0.93264 0.85786 0.79386 0.78651 0.79672 1.18691 1.19897 1.17702 1.21236 0.89780 0.94720 1.53527 0.92678 1.19392 0.93715 0.79144 0.97133 1.45941 1.05774 1.11243 1.68988 1.20063 0.83806 0.89167 0.79062 1.90712 1.55604 1.46109 1.50794 1.20078 0.83269 0.89262 0.77671 1.90711 1.55676 1.45301 1.47494 1.42883 1.06538 1.08683 1.68913 1.17419 0.93825 0.84900 1.04602 1.21361 1.00355 0.93503 0.98018 1.21288 0.97355 0.95273 1.01752 1.21389 0.93048 1.00508 0.95530 1.21413 1.02903 0.90827 1.05433 1.18765 0.90409 0.89655 0.95876 1.86000 1.30383 1.36301 1.71874 1.22526 0.80867 0.96404 0.98601 1.22127 0.99779 0.99536 0.98086 1.23090 0.89789 1.04602 1.01410 1.23190 1.03393 1.04045 0.91364 0.91700 0.95284 0.95305 0.74921 0.73377 0.84800 0.83331 0.82012 0.82148 0.89799 0.90552 0.87905 0.87503 0.86879 0.87941 0.88594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.90 13.96 21.45 0.30 -55.60 16 2 C 0.03 1.47 5.47 84.66 0.46 1.94 16 3 Si 0.94 43.15 27.47 68.60 1.88 45.03 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.25 -11.22 6.54 99.48 0.65 -10.57 16 7 C -0.55 -31.02 9.83 25.60 0.25 -30.77 16 8 H 0.06 3.31 7.84 -2.91 -0.02 3.28 16 9 C 0.23 11.15 4.50 85.63 0.38 11.53 16 10 N -0.67 -28.68 5.54 -468.25 -2.59 -31.27 16 11 C 0.50 19.78 7.89 87.23 0.69 20.47 16 12 O -0.55 -23.63 16.48 -3.29 -0.05 -23.68 16 13 C 0.52 17.90 7.69 87.23 0.67 18.57 16 14 O -0.52 -18.95 13.64 -3.37 -0.05 -19.00 16 15 N -0.62 -18.70 5.27 -304.49 -1.60 -20.30 16 16 C 0.09 2.34 6.44 38.26 0.25 2.59 16 17 C -0.11 -2.91 8.71 22.39 0.20 -2.71 16 18 C -0.14 -2.58 10.04 22.27 0.22 -2.36 16 19 C -0.09 -1.23 10.04 22.29 0.22 -1.01 16 20 C -0.19 -2.92 9.04 22.35 0.20 -2.71 16 21 C 0.10 2.21 6.70 22.62 0.15 2.36 16 22 O -0.33 -7.06 9.55 -93.01 -0.89 -7.95 16 23 C 0.09 1.22 5.02 71.98 0.36 1.59 16 24 C -0.18 -2.42 6.06 -10.79 -0.07 -2.48 16 25 C -0.15 -1.35 10.25 30.59 0.31 -1.03 16 26 C -0.18 -2.14 10.18 30.59 0.31 -1.83 16 27 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 28 H 0.03 1.45 7.20 -2.39 -0.02 1.43 16 29 H 0.03 1.41 7.57 -2.39 -0.02 1.39 16 30 H 0.41 17.06 7.79 -92.71 -0.72 16.34 16 31 H 0.43 12.21 7.82 -92.71 -0.73 11.48 16 32 H 0.13 3.95 5.79 -2.91 -0.02 3.94 16 33 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 34 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 35 H 0.16 1.46 6.30 -2.91 -0.02 1.44 16 36 H 0.08 0.83 7.65 -2.39 -0.02 0.81 16 37 H 0.08 0.83 7.41 -2.38 -0.02 0.81 16 38 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 41 H 0.10 1.06 8.03 -2.39 -0.02 1.04 16 42 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -68.75 360.92 1.19 -67.56 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: -0.43 Total: 31.08 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 4.62 Total: 14.13 kcal Atomic # 7 Polarization: -103.28 SS G_CDS: -3.90 Total: -107.18 kcal Atomic # 8 Polarization: -49.64 SS G_CDS: -0.99 Total: -50.63 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.88 Total: 45.03 kcal Total: -68.75 1.19 -67.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427890721.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.426 kcal (2) G-P(sol) polarization free energy of solvation -68.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds