Wall clock time and date at job start Tue Mar 31 2020 12:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00061 * 2 1 4 4 H 1.48499 * 109.47070 * 269.99819 * 3 2 1 5 5 H 1.48508 * 109.47166 * 29.99899 * 3 2 1 6 6 H 1.48505 * 109.47189 * 149.99660 * 3 2 1 7 7 C 1.37878 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00406 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99954 * 180.02562 * 7 2 1 10 10 N 1.46494 * 109.47202 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00140 * 180.02562 * 10 9 7 12 12 O 1.21366 * 119.99826 * 359.97438 * 11 10 9 13 13 C 1.49332 * 120.00446 * 180.02562 * 11 10 9 14 14 O 1.21390 * 119.99591 * 359.97438 * 13 11 10 15 15 N 1.34773 * 120.00446 * 179.97438 * 13 11 10 16 16 C 1.39875 * 120.00366 * 185.27849 * 15 13 11 17 17 C 1.38917 * 120.01926 * 213.35160 * 16 15 13 18 18 C 1.38054 * 119.97556 * 180.02562 * 17 16 15 19 19 C 1.38751 * 120.02559 * 359.97438 * 18 17 16 20 20 O 1.35945 * 119.98413 * 179.97438 * 19 18 17 21 21 C 1.42903 * 117.00012 * 180.02562 * 20 19 18 22 22 C 1.53007 * 109.46806 * 179.97438 * 21 20 19 23 23 C 1.52999 * 117.49917 * 243.74600 * 22 21 20 24 24 C 1.53003 * 117.49366 * 175.08626 * 22 21 20 25 25 C 1.38758 * 120.03501 * 0.26032 * 19 18 17 26 26 C 1.38053 * 120.01994 * 359.48419 * 25 19 18 27 27 H 0.97002 * 120.00169 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.46812 * 59.99905 * 9 7 2 29 29 H 1.09000 * 109.46943 * 300.00382 * 9 7 2 30 30 H 0.96999 * 120.00098 * 0.02562 * 10 9 7 31 31 H 0.97000 * 119.99745 * 5.27604 * 15 13 11 32 32 H 1.07996 * 120.01319 * 0.03540 * 17 16 15 33 33 H 1.08002 * 119.99055 * 179.97438 * 18 17 16 34 34 H 1.08995 * 109.47443 * 299.99652 * 21 20 19 35 35 H 1.09001 * 109.47291 * 60.00244 * 21 20 19 36 36 H 1.09000 * 115.55187 * 29.42180 * 22 21 20 37 37 H 1.09000 * 117.50132 * 359.97438 * 23 22 21 38 38 H 1.09003 * 117.49811 * 145.02616 * 23 22 21 39 39 H 1.09009 * 117.49608 * 214.98062 * 24 22 21 40 40 H 1.08995 * 117.50122 * 0.02562 * 24 22 21 41 41 H 1.08000 * 119.98701 * 179.74695 * 25 19 18 42 42 H 1.08002 * 120.01147 * 180.25566 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0022 11 6 5.3249 -2.8216 0.0034 12 8 6.1135 -1.8991 0.0031 13 6 5.8227 -4.2294 0.0040 14 8 5.0339 -5.1521 0.0038 15 7 7.1477 -4.4758 0.0047 16 6 7.6150 -5.7895 -0.1062 17 6 8.7826 -6.1690 0.5437 18 6 9.2433 -7.4657 0.4332 19 6 8.5403 -8.3899 -0.3263 20 8 8.9950 -9.6665 -0.4350 21 6 8.2217 -10.5648 -1.2332 22 6 8.8854 -11.9435 -1.2374 23 6 9.4027 -12.4744 -2.5758 24 6 8.1465 -13.0809 -1.9454 25 6 7.3766 -8.0104 -0.9798 26 6 6.9115 -6.7155 -0.8661 27 1 -0.4850 0.8400 -0.0004 28 1 3.8745 -0.6800 0.8912 29 1 3.8752 -0.6804 -0.8888 30 1 3.3695 -3.3125 0.0021 31 1 7.7774 -3.7419 0.0820 32 1 9.3297 -5.4500 1.1354 33 1 10.1513 -7.7609 0.9381 34 1 7.2169 -10.6462 -0.8188 35 1 8.1643 -10.1865 -2.2538 36 1 9.4552 -12.1937 -0.3425 37 1 9.2699 -11.8418 -3.4535 38 1 10.3127 -13.0742 -2.5615 39 1 8.2307 -14.0795 -1.5166 40 1 7.1880 -12.8470 -2.4085 41 1 6.8322 -8.7293 -1.5741 42 1 6.0035 -6.4213 -1.3715 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427901833.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:44 Heat of formation + Delta-G solvation = -51.723999 kcal Electronic energy + Delta-G solvation = -24702.942484 eV Core-core repulsion = 20842.520838 eV Total energy + Delta-G solvation = -3860.421647 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.98908 -40.10983 -38.69000 -37.85159 -36.94401 -35.01380 -34.11610 -32.42189 -31.33083 -29.57423 -28.43011 -27.62261 -24.81039 -23.41485 -22.90605 -22.41429 -21.37279 -21.03856 -20.04014 -18.78865 -18.50402 -17.46019 -16.92174 -16.57721 -16.20874 -15.76645 -15.67177 -15.28610 -14.97926 -14.86414 -14.42281 -14.20100 -14.04037 -13.60999 -13.50456 -13.21533 -13.08085 -12.77505 -12.46837 -12.29518 -12.10397 -11.90150 -11.83804 -11.46184 -11.14536 -11.04032 -10.93762 -10.85417 -10.55718 -10.07149 -10.04276 -9.58592 -9.35322 -9.18739 -8.88031 -8.43010 -7.92034 -6.27066 -4.31085 0.97882 1.12906 1.77085 2.53941 2.75022 3.21634 3.29066 3.30666 3.34587 3.39875 3.64942 3.95707 4.21587 4.26754 4.34692 4.46674 4.60448 4.62718 4.74366 4.86903 4.89707 5.04518 5.06939 5.07119 5.13508 5.19463 5.30823 5.37412 5.57660 5.59103 5.70844 5.78980 6.08486 6.14338 6.19709 6.55105 6.58838 6.84184 6.89384 7.07782 7.15178 7.23134 7.70183 7.99101 8.32284 8.44765 8.72950 9.30253 10.84639 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029350 B = 0.001974 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.774039 B =14179.645554 C =14930.458227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.080 3.920 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.549 4.549 8 H 0.083 0.917 9 C 0.217 3.783 10 N -0.664 5.664 11 C 0.494 3.506 12 O -0.538 6.538 13 C 0.509 3.491 14 O -0.503 6.503 15 N -0.648 5.648 16 C 0.112 3.888 17 C -0.102 4.102 18 C -0.132 4.132 19 C 0.114 3.886 20 O -0.313 6.313 21 C 0.090 3.910 22 C -0.157 4.157 23 C -0.177 4.177 24 C -0.170 4.170 25 C -0.188 4.188 26 C -0.079 4.079 27 H 0.269 0.731 28 H 0.033 0.967 29 H 0.029 0.971 30 H 0.410 0.590 31 H 0.422 0.578 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.131 0.869 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.101 -21.916 -2.761 29.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.587 4.587 8 H 0.101 0.899 9 C 0.096 3.904 10 N -0.313 5.313 11 C 0.272 3.728 12 O -0.417 6.417 13 C 0.291 3.709 14 O -0.376 6.376 15 N -0.296 5.296 16 C 0.018 3.982 17 C -0.122 4.122 18 C -0.151 4.151 19 C 0.068 3.932 20 O -0.227 6.227 21 C 0.015 3.985 22 C -0.175 4.175 23 C -0.213 4.213 24 C -0.207 4.207 25 C -0.207 4.207 26 C -0.099 4.099 27 H 0.079 0.921 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.246 0.754 31 H 0.260 0.740 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.135 0.865 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.148 0.852 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 19.988 -21.807 -2.691 29.704 hybrid contribution 0.065 0.895 -0.089 0.902 sum 20.054 -20.912 -2.779 29.107 Atomic orbital electron populations 1.69874 1.06207 1.27553 1.48814 1.24782 0.94818 0.99127 0.93750 0.86821 0.80544 0.83227 0.79105 1.19746 1.20746 1.18488 1.21048 0.88105 0.95557 1.53972 0.89905 1.19723 0.95828 0.77387 0.97456 1.46117 1.04925 1.12310 1.67943 1.19722 0.84659 0.88027 0.80363 1.90729 1.55346 1.45131 1.50518 1.20732 0.82577 0.90834 0.76737 1.90761 1.55051 1.45829 1.45991 1.43168 1.07572 1.07542 1.71286 1.17662 0.96159 0.84976 0.99422 1.20733 0.96458 0.95952 0.99060 1.20164 1.01517 0.91454 1.01955 1.18957 0.93396 0.84085 0.96728 1.86027 1.50836 1.18040 1.67807 1.22306 0.94274 0.87245 0.94681 1.22107 1.04639 0.92829 0.97942 1.23126 0.98257 1.03855 0.96106 1.23019 0.96855 0.97358 1.03495 1.21119 0.97509 0.97569 1.04493 1.21001 1.00047 0.92289 0.96554 0.92107 0.94875 0.95326 0.75374 0.73962 0.84642 0.84708 0.91398 0.91779 0.86549 0.88470 0.88385 0.88110 0.88387 0.85165 0.84247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.96 55.43 0.77 -25.24 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 20.75 27.47 -169.99 -4.67 16.09 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 7 C -0.55 -14.86 9.83 -34.44 -0.34 -15.19 16 8 H 0.08 2.36 7.84 -52.49 -0.41 1.95 16 9 C 0.22 5.18 4.50 -5.20 -0.02 5.15 16 10 N -0.66 -13.62 5.54 -61.95 -0.34 -13.96 16 11 C 0.49 9.27 7.89 -11.64 -0.09 9.17 16 12 O -0.54 -10.97 16.48 5.48 0.09 -10.88 16 13 C 0.51 8.19 7.62 -11.64 -0.09 8.10 16 14 O -0.50 -8.83 14.16 5.46 0.08 -8.75 16 15 N -0.65 -8.44 5.33 -10.27 -0.05 -8.50 16 16 C 0.11 1.37 6.28 -83.68 -0.53 0.85 16 17 C -0.10 -1.02 9.96 -39.40 -0.39 -1.41 16 18 C -0.13 -1.30 9.98 -39.46 -0.39 -1.70 16 19 C 0.11 1.22 6.69 -39.20 -0.26 0.95 16 20 O -0.31 -3.15 10.14 -19.57 -0.20 -3.34 16 21 C 0.09 0.68 5.02 37.16 0.19 0.87 16 22 C -0.16 -1.01 6.05 -90.61 -0.55 -1.56 16 23 C -0.18 -0.94 10.18 -26.69 -0.27 -1.22 16 24 C -0.17 -0.85 10.25 -26.69 -0.27 -1.13 16 25 C -0.19 -2.04 9.03 -39.46 -0.36 -2.39 16 26 C -0.08 -1.00 8.65 -39.40 -0.34 -1.34 16 27 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.03 0.81 7.20 -51.92 -0.37 0.44 16 29 H 0.03 0.69 7.57 -51.93 -0.39 0.30 16 30 H 0.41 8.02 7.79 -40.82 -0.32 7.70 16 31 H 0.42 4.74 8.30 -40.82 -0.34 4.40 16 32 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.07 0.48 7.67 -51.93 -0.40 0.09 16 35 H 0.06 0.44 7.38 -51.93 -0.38 0.05 16 36 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.10 0.49 8.03 -51.93 -0.42 0.08 16 38 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.10 0.42 8.14 -51.92 -0.42 -0.01 16 40 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.13 1.16 6.29 -52.49 -0.33 0.83 16 42 H 0.14 1.91 6.41 -52.49 -0.34 1.57 16 LS Contribution 362.70 15.07 5.47 5.47 Total: -1.00 -31.46 362.70 -8.08 -39.54 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -5.40 Total: 8.29 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -3.82 Total: 1.28 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.38 Total: -47.69 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.03 Total: -22.97 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.09 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.46 -8.08 -39.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427901833.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.180 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds