Wall clock time and date at job start Tue Mar 31 2020 12:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00061 * 2 1 4 4 H 1.48499 * 109.47070 * 269.99819 * 3 2 1 5 5 H 1.48508 * 109.47166 * 29.99899 * 3 2 1 6 6 H 1.48505 * 109.47189 * 149.99660 * 3 2 1 7 7 C 1.37878 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00406 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99954 * 180.02562 * 7 2 1 10 10 N 1.46494 * 109.47202 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00140 * 180.02562 * 10 9 7 12 12 O 1.21366 * 119.99826 * 359.97438 * 11 10 9 13 13 C 1.49332 * 120.00446 * 180.02562 * 11 10 9 14 14 O 1.21390 * 119.99591 * 359.97438 * 13 11 10 15 15 N 1.34773 * 120.00446 * 179.97438 * 13 11 10 16 16 C 1.39875 * 120.00366 * 185.27849 * 15 13 11 17 17 C 1.38917 * 120.01926 * 213.35160 * 16 15 13 18 18 C 1.38054 * 119.97556 * 180.02562 * 17 16 15 19 19 C 1.38751 * 120.02559 * 359.97438 * 18 17 16 20 20 O 1.35945 * 119.98413 * 179.97438 * 19 18 17 21 21 C 1.42903 * 117.00012 * 180.02562 * 20 19 18 22 22 C 1.53007 * 109.46806 * 179.97438 * 21 20 19 23 23 C 1.52999 * 117.49917 * 243.74600 * 22 21 20 24 24 C 1.53003 * 117.49366 * 175.08626 * 22 21 20 25 25 C 1.38758 * 120.03501 * 0.26032 * 19 18 17 26 26 C 1.38053 * 120.01994 * 359.48419 * 25 19 18 27 27 H 0.97002 * 120.00169 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.46812 * 59.99905 * 9 7 2 29 29 H 1.09000 * 109.46943 * 300.00382 * 9 7 2 30 30 H 0.96999 * 120.00098 * 0.02562 * 10 9 7 31 31 H 0.97000 * 119.99745 * 5.27604 * 15 13 11 32 32 H 1.07996 * 120.01319 * 0.03540 * 17 16 15 33 33 H 1.08002 * 119.99055 * 179.97438 * 18 17 16 34 34 H 1.08995 * 109.47443 * 299.99652 * 21 20 19 35 35 H 1.09001 * 109.47291 * 60.00244 * 21 20 19 36 36 H 1.09000 * 115.55187 * 29.42180 * 22 21 20 37 37 H 1.09000 * 117.50132 * 359.97438 * 23 22 21 38 38 H 1.09003 * 117.49811 * 145.02616 * 23 22 21 39 39 H 1.09009 * 117.49608 * 214.98062 * 24 22 21 40 40 H 1.08995 * 117.50122 * 0.02562 * 24 22 21 41 41 H 1.08000 * 119.98701 * 179.74695 * 25 19 18 42 42 H 1.08002 * 120.01147 * 180.25566 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0022 11 6 5.3249 -2.8216 0.0034 12 8 6.1135 -1.8991 0.0031 13 6 5.8227 -4.2294 0.0040 14 8 5.0339 -5.1521 0.0038 15 7 7.1477 -4.4758 0.0047 16 6 7.6150 -5.7895 -0.1062 17 6 8.7826 -6.1690 0.5437 18 6 9.2433 -7.4657 0.4332 19 6 8.5403 -8.3899 -0.3263 20 8 8.9950 -9.6665 -0.4350 21 6 8.2217 -10.5648 -1.2332 22 6 8.8854 -11.9435 -1.2374 23 6 9.4027 -12.4744 -2.5758 24 6 8.1465 -13.0809 -1.9454 25 6 7.3766 -8.0104 -0.9798 26 6 6.9115 -6.7155 -0.8661 27 1 -0.4850 0.8400 -0.0004 28 1 3.8745 -0.6800 0.8912 29 1 3.8752 -0.6804 -0.8888 30 1 3.3695 -3.3125 0.0021 31 1 7.7774 -3.7419 0.0820 32 1 9.3297 -5.4500 1.1354 33 1 10.1513 -7.7609 0.9381 34 1 7.2169 -10.6462 -0.8188 35 1 8.1643 -10.1865 -2.2538 36 1 9.4552 -12.1937 -0.3425 37 1 9.2699 -11.8418 -3.4535 38 1 10.3127 -13.0742 -2.5615 39 1 8.2307 -14.0795 -1.5166 40 1 7.1880 -12.8470 -2.4085 41 1 6.8322 -8.7293 -1.5741 42 1 6.0035 -6.4213 -1.3715 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427901833.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:43 Heat of formation + Delta-G solvation = -72.953485 kcal Electronic energy + Delta-G solvation = -24703.863064 eV Core-core repulsion = 20842.520838 eV Total energy + Delta-G solvation = -3861.342226 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.15029 -41.06959 -39.93161 -38.74535 -37.66312 -36.54608 -35.43273 -34.41505 -32.15941 -30.62117 -30.11674 -28.38291 -26.23488 -24.39380 -23.79623 -23.28427 -22.66393 -21.65224 -21.39619 -20.17455 -19.27341 -18.72116 -18.51366 -17.59463 -17.19974 -17.05333 -16.86749 -16.67698 -15.99697 -15.88878 -15.61397 -15.40474 -15.02850 -14.93325 -14.45816 -14.39755 -14.31573 -14.07979 -13.83016 -13.59276 -13.13673 -12.86445 -12.72433 -12.69236 -12.42646 -12.38507 -11.92121 -11.84848 -11.70565 -11.39361 -11.25716 -10.93647 -10.86742 -10.71627 -10.19243 -10.06047 -8.82629 -8.40172 -6.49829 -0.08316 0.28845 0.56973 1.24548 1.36406 1.38831 1.49826 2.04343 2.08658 2.28587 2.65119 2.72073 2.86169 2.94782 3.37886 3.69258 3.81897 3.87113 3.90787 4.03340 4.15413 4.20719 4.32404 4.42891 4.46588 4.55189 4.64488 4.76564 4.78123 4.95122 4.98663 5.00172 5.12141 5.19344 5.20538 5.22155 5.23559 5.27898 5.29429 5.66630 5.86223 6.07681 6.37694 6.43286 6.53752 6.69649 6.88924 7.16746 8.74724 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029350 B = 0.001974 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.774039 B =14179.645554 C =14930.458227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.025 3.975 3 Si 0.943 3.057 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.251 1.251 7 C -0.556 4.556 8 H 0.054 0.946 9 C 0.229 3.771 10 N -0.672 5.672 11 C 0.499 3.501 12 O -0.551 6.551 13 C 0.516 3.484 14 O -0.521 6.521 15 N -0.629 5.629 16 C 0.087 3.913 17 C -0.089 4.089 18 C -0.133 4.133 19 C 0.112 3.888 20 O -0.321 6.321 21 C 0.085 3.915 22 C -0.170 4.170 23 C -0.176 4.176 24 C -0.163 4.163 25 C -0.192 4.192 26 C -0.095 4.095 27 H 0.273 0.727 28 H 0.031 0.969 29 H 0.030 0.970 30 H 0.413 0.587 31 H 0.432 0.568 32 H 0.164 0.836 33 H 0.158 0.842 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.144 0.856 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.613 -22.408 -2.650 31.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.175 4.175 3 Si 0.766 3.234 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.175 1.175 7 C -0.594 4.594 8 H 0.072 0.928 9 C 0.106 3.894 10 N -0.321 5.321 11 C 0.279 3.721 12 O -0.430 6.430 13 C 0.298 3.702 14 O -0.397 6.397 15 N -0.276 5.276 16 C -0.006 4.006 17 C -0.109 4.109 18 C -0.152 4.152 19 C 0.066 3.934 20 O -0.235 6.235 21 C 0.010 3.990 22 C -0.189 4.189 23 C -0.213 4.213 24 C -0.200 4.200 25 C -0.211 4.211 26 C -0.115 4.115 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.250 0.750 31 H 0.272 0.728 32 H 0.181 0.819 33 H 0.175 0.825 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.131 0.869 37 H 0.117 0.883 38 H 0.123 0.877 39 H 0.129 0.871 40 H 0.121 0.879 41 H 0.162 0.838 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 22.552 -22.332 -2.585 31.843 hybrid contribution -0.655 0.861 -0.139 1.091 sum 21.897 -21.470 -2.724 30.788 Atomic orbital electron populations 1.69996 1.07959 1.28813 1.50184 1.25674 0.95610 1.02981 0.93257 0.85775 0.79437 0.78558 0.79644 1.18754 1.20000 1.17490 1.21256 0.89932 0.94665 1.53530 0.92801 1.19387 0.93599 0.79213 0.97205 1.45959 1.05964 1.11177 1.69041 1.20076 0.83717 0.89250 0.79027 1.90713 1.55492 1.46069 1.50759 1.20093 0.83607 0.89063 0.77418 1.90767 1.55776 1.45682 1.47452 1.42984 1.06360 1.08526 1.69755 1.17851 0.97415 0.84349 1.01008 1.20997 0.95263 0.96560 0.98083 1.20497 1.02062 0.91142 1.01476 1.19167 0.93202 0.84611 0.96374 1.86030 1.51357 1.17905 1.68181 1.22484 0.94352 0.87405 0.94721 1.22101 1.05648 0.92670 0.98434 1.23210 0.98828 1.03796 0.95492 1.23115 0.96949 0.97261 1.02686 1.21236 0.97892 0.97180 1.04788 1.20986 0.99906 0.93286 0.97319 0.91737 0.95133 0.95263 0.75034 0.72848 0.81880 0.82466 0.91154 0.91109 0.86937 0.88283 0.87662 0.87148 0.87891 0.83802 0.85935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.47 13.96 21.45 0.30 -55.17 16 2 C 0.03 1.41 5.47 84.65 0.46 1.88 16 3 Si 0.94 42.43 27.47 68.60 1.88 44.32 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 7 C -0.56 -30.63 9.83 25.60 0.25 -30.38 16 8 H 0.05 3.20 7.84 -2.91 -0.02 3.18 16 9 C 0.23 10.83 4.50 85.63 0.38 11.22 16 10 N -0.67 -27.67 5.54 -468.26 -2.59 -30.27 16 11 C 0.50 18.47 7.89 87.23 0.69 19.16 16 12 O -0.55 -21.79 16.48 -3.30 -0.05 -21.85 16 13 C 0.52 16.37 7.62 87.23 0.66 17.04 16 14 O -0.52 -18.37 14.16 -3.37 -0.05 -18.42 16 15 N -0.63 -15.56 5.33 -304.75 -1.62 -17.19 16 16 C 0.09 2.02 6.28 38.18 0.24 2.26 16 17 C -0.09 -1.56 9.96 22.39 0.22 -1.34 16 18 C -0.13 -2.28 9.98 22.35 0.22 -2.06 16 19 C 0.11 2.21 6.69 22.52 0.15 2.36 16 20 O -0.32 -5.94 10.14 -92.93 -0.94 -6.88 16 21 C 0.09 1.18 5.02 71.98 0.36 1.54 16 22 C -0.17 -1.96 6.05 -10.79 -0.07 -2.03 16 23 C -0.18 -1.61 10.18 30.62 0.31 -1.30 16 24 C -0.16 -1.36 10.25 30.62 0.31 -1.05 16 25 C -0.19 -3.99 9.03 22.35 0.20 -3.79 16 26 C -0.09 -2.36 8.65 22.39 0.19 -2.16 16 27 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 28 H 0.03 1.47 7.20 -2.38 -0.02 1.46 16 29 H 0.03 1.39 7.57 -2.39 -0.02 1.37 16 30 H 0.41 16.53 7.79 -92.71 -0.72 15.81 16 31 H 0.43 8.89 8.30 -92.71 -0.77 8.12 16 32 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 33 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 34 H 0.07 0.93 7.67 -2.39 -0.02 0.91 16 35 H 0.07 0.87 7.38 -2.39 -0.02 0.85 16 36 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.10 0.86 8.03 -2.39 -0.02 0.84 16 38 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 40 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.14 2.44 6.29 -2.91 -0.02 2.43 16 42 H 0.12 3.43 6.41 -2.91 -0.02 3.41 16 Total: -1.00 -67.21 362.70 1.06 -66.16 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: -0.47 Total: 27.97 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 4.61 Total: 11.33 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -3.92 Total: -102.63 kcal Atomic # 8 Polarization: -46.11 SS G_CDS: -1.04 Total: -47.15 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 1.88 Total: 44.32 kcal Total: -67.21 1.06 -66.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427901833.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.795 kcal (2) G-P(sol) polarization free energy of solvation -67.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds