Wall clock time and date at job start Tue Mar 31 2020 13:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47198 * 2 1 4 4 C 1.38383 * 119.85491 * 98.75133 * 3 2 1 5 5 C 1.37931 * 120.14430 * 180.02562 * 4 3 2 6 6 C 1.39593 * 119.85572 * 359.97438 * 5 4 3 7 7 C 1.47847 * 120.14419 * 180.02562 * 6 5 4 8 8 O 1.21553 * 120.00040 * 185.55255 * 7 6 5 9 9 N 1.34779 * 120.00133 * 5.55525 * 7 6 5 10 10 C 1.46497 * 120.00093 * 184.74846 * 9 7 6 11 11 C 1.53000 * 109.46924 * 184.97958 * 10 9 7 12 12 C 1.50697 * 115.54950 * 55.44255 * 11 10 9 13 13 H 1.08006 * 119.99662 * 215.61121 * 12 11 10 14 14 C 1.37878 * 119.99918 * 35.33458 * 12 11 10 15 15 N 1.31512 * 120.00145 * 357.46630 * 14 12 11 16 16 Si 1.86806 * 119.99834 * 177.47144 * 14 12 11 17 17 H 1.48502 * 109.46971 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47167 * 119.99452 * 16 14 12 19 19 H 1.48496 * 109.46906 * 240.00183 * 16 14 12 20 20 C 1.53006 * 117.49350 * 201.10748 * 11 10 9 21 21 C 1.52997 * 117.50032 * 269.76703 * 11 10 9 22 22 C 1.39556 * 119.71258 * 0.27751 * 6 5 4 23 23 C 1.37985 * 119.84772 * 359.49146 * 22 6 5 24 24 N 1.48015 * 119.92523 * 180.23568 * 23 22 6 25 25 O 1.21802 * 119.99849 * 5.76290 * 24 23 22 26 26 O 1.21793 * 119.99973 * 185.77124 * 24 23 22 27 27 H 1.09005 * 109.47350 * 59.99947 * 1 2 3 28 28 H 1.09009 * 109.47021 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47346 * 299.99940 * 1 2 3 30 30 H 1.09000 * 109.46913 * 240.00361 * 2 1 3 31 31 H 1.08997 * 109.47029 * 119.99957 * 2 1 3 32 32 H 1.07999 * 119.92142 * 0.02562 * 4 3 2 33 33 H 1.08005 * 120.07137 * 179.97438 * 5 4 3 34 34 H 0.97002 * 119.99449 * 4.74405 * 9 7 6 35 35 H 1.09009 * 109.46993 * 64.98013 * 10 9 7 36 36 H 1.09003 * 109.47267 * 304.98545 * 10 9 7 37 37 H 0.97003 * 119.99777 * 184.99491 * 15 14 12 38 38 H 1.09009 * 117.49512 * 215.00211 * 20 11 10 39 39 H 1.08997 * 117.50218 * 0.02566 * 20 11 10 40 40 H 1.09000 * 117.49837 * 359.97438 * 21 11 10 41 41 H 1.08998 * 117.50045 * 144.97846 * 21 11 10 42 42 H 1.07993 * 120.07462 * 179.72327 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4341 2.0094 1.1862 5 6 2.8944 3.3096 1.1932 6 6 2.9549 4.0318 0.0001 7 6 3.4478 5.4257 0.0001 8 8 3.4052 6.0854 -1.0199 9 7 3.9443 5.9649 1.1311 10 6 4.3360 7.3763 1.1592 11 6 4.9777 7.7007 2.5097 12 6 6.1510 6.8375 2.8959 13 1 6.3039 6.5651 3.9298 14 6 7.0262 6.3908 1.9286 15 7 6.8093 6.6763 0.6632 16 14 8.5198 5.3800 2.4153 17 1 8.5361 5.1991 3.8892 18 1 8.4558 4.0521 1.7538 19 1 9.7551 6.0859 1.9901 20 6 5.0065 9.1675 2.9439 21 6 4.0565 8.1838 3.6317 22 6 2.5432 3.4341 -1.1919 23 6 2.0893 2.1310 -1.1857 24 7 1.6572 1.4937 -2.4498 25 8 1.8002 2.0804 -3.5076 26 8 1.1585 0.3826 -2.4322 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.3871 1.4494 2.1085 33 1 3.2073 3.7680 2.1197 34 1 4.0423 5.4184 1.9265 35 1 3.4541 8.0010 1.0165 36 1 5.0520 7.5707 0.3606 37 1 7.3832 6.3023 -0.0236 38 1 5.8742 9.5082 3.5090 39 1 4.5679 9.9013 2.2677 40 1 2.9934 8.2709 3.4076 41 1 4.2989 7.8770 4.6492 42 1 2.5834 3.9888 -2.1176 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431150121.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:12 Heat of formation + Delta-G solvation = 10.575582 kcal Electronic energy + Delta-G solvation = -26589.789865 eV Core-core repulsion = 22732.069731 eV Total energy + Delta-G solvation = -3857.720134 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.32063 -40.11921 -38.48763 -36.87482 -36.65551 -34.29644 -33.39259 -32.34316 -31.94261 -30.22069 -26.78798 -26.27335 -25.60765 -24.14778 -22.76801 -22.00655 -21.37397 -20.47353 -19.45321 -18.76142 -18.47082 -17.60794 -17.15498 -16.35602 -16.10845 -15.61910 -14.99635 -14.84937 -14.51790 -14.39974 -14.02273 -13.89740 -13.75188 -13.12481 -12.98273 -12.82343 -12.24202 -12.08179 -11.86491 -11.77180 -11.58725 -11.50673 -11.38325 -11.18951 -11.02576 -10.82160 -10.62957 -10.58212 -10.37861 -9.89902 -9.77484 -9.40135 -9.24500 -9.12583 -8.98649 -8.42569 -8.08179 -6.11708 -4.32802 -0.21024 0.56049 1.26849 1.35821 2.79002 3.11300 3.23143 3.24024 3.63135 3.82784 4.15437 4.17339 4.18999 4.59777 4.70602 4.71932 4.85024 4.97612 5.06072 5.07351 5.31646 5.35731 5.49711 5.51870 5.67700 5.77653 5.85530 5.88065 5.90490 5.99382 6.09014 6.17468 6.39790 6.46716 6.48058 6.56240 6.77423 6.94301 7.13714 7.35743 7.47476 7.65724 7.85219 8.16698 8.28152 8.68757 8.86208 9.32012 10.77414 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015972 B = 0.003543 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.649284 B = 7901.357730 C = 8150.627402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 C -0.004 4.004 4 C -0.127 4.127 5 C -0.033 4.033 6 C -0.119 4.119 7 C 0.546 3.454 8 O -0.544 6.544 9 N -0.671 5.671 10 C 0.160 3.840 11 C 0.034 3.966 12 C -0.499 4.499 13 H 0.062 0.938 14 C 0.074 3.926 15 N -0.866 5.866 16 Si 0.892 3.108 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.281 1.281 20 C -0.196 4.196 21 C -0.212 4.212 22 C 0.000 4.000 23 C -0.055 4.055 24 N 0.034 4.966 25 O -0.166 6.166 26 O -0.158 6.158 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.397 0.603 35 H 0.023 0.977 36 H 0.124 0.876 37 H 0.264 0.736 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.830 -11.185 2.367 15.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.139 4.139 3 C -0.005 4.005 4 C -0.145 4.145 5 C -0.052 4.052 6 C -0.123 4.123 7 C 0.330 3.670 8 O -0.424 6.424 9 N -0.317 5.317 10 C 0.037 3.963 11 C 0.034 3.966 12 C -0.536 4.536 13 H 0.080 0.920 14 C -0.130 4.130 15 N -0.502 5.502 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.207 1.207 20 C -0.235 4.235 21 C -0.250 4.250 22 C -0.020 4.020 23 C -0.138 4.138 24 N 0.551 4.449 25 O -0.380 6.380 26 O -0.372 6.372 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.169 0.831 33 H 0.168 0.832 34 H 0.232 0.768 35 H 0.041 0.959 36 H 0.142 0.858 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.522 -10.336 2.068 14.205 hybrid contribution 0.897 -0.808 0.392 1.269 sum -8.625 -11.143 2.460 14.304 Atomic orbital electron populations 1.21677 0.93291 1.02690 1.01956 1.21015 0.97585 0.90478 1.04791 1.20041 0.92878 0.97100 0.90513 1.21080 1.00827 0.95282 0.97308 1.21927 0.91298 0.93519 0.98468 1.20270 1.02690 0.96651 0.92693 1.17746 0.79690 0.84994 0.84554 1.90755 1.57526 1.62189 1.31924 1.45567 1.60496 1.13591 1.12039 1.21240 0.96678 0.77744 1.00626 1.19233 0.94984 0.92454 0.89966 1.20544 1.07552 1.31481 0.94017 0.91975 1.25004 0.97468 0.95630 0.94933 1.69809 1.38337 1.42565 0.99525 0.86527 0.83074 0.79704 0.78714 1.19675 1.20978 1.20732 1.22942 1.00933 0.95127 1.04501 1.22970 0.95052 1.08329 0.98624 1.21096 0.89371 0.90980 1.00593 1.20791 1.13288 0.95564 0.84197 1.43508 0.98306 1.00423 1.02673 1.94578 1.59782 1.64959 1.18660 1.94431 1.43720 1.05510 1.93570 0.92100 0.91428 0.92883 0.87993 0.90196 0.83143 0.83187 0.76844 0.95932 0.85841 0.92542 0.90118 0.91373 0.91321 0.90544 0.81809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.38 37.16 0.35 -0.83 16 2 C -0.10 -0.92 5.32 -27.88 -0.15 -1.07 16 3 C 0.00 -0.04 5.14 -104.53 -0.54 -0.58 16 4 C -0.13 -1.24 9.65 -39.64 -0.38 -1.62 16 5 C -0.03 -0.39 9.52 -39.19 -0.37 -0.77 16 6 C -0.12 -1.82 5.87 -104.97 -0.62 -2.44 16 7 C 0.55 10.59 7.76 -12.33 -0.10 10.50 16 8 O -0.54 -12.51 16.34 5.32 0.09 -12.42 16 9 N -0.67 -13.02 5.13 -61.25 -0.31 -13.34 16 10 C 0.16 3.51 4.63 -4.04 -0.02 3.50 16 11 C 0.03 0.75 2.01 -155.66 -0.31 0.44 16 12 C -0.50 -11.86 8.49 -34.44 -0.29 -12.16 16 13 H 0.06 1.48 7.82 -52.48 -0.41 1.07 16 14 C 0.07 1.81 5.33 -17.82 -0.10 1.71 16 15 N -0.87 -22.19 10.21 55.43 0.57 -21.62 16 16 Si 0.89 19.28 29.54 -169.99 -5.02 14.26 16 17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 C -0.20 -4.04 9.96 -26.69 -0.27 -4.30 16 21 C -0.21 -4.06 9.93 -26.69 -0.27 -4.33 16 22 C 0.00 -0.01 9.10 -39.18 -0.36 -0.36 16 23 C -0.05 -0.76 6.83 -80.01 -0.55 -1.30 16 24 N 0.03 0.51 4.45 33.93 0.15 0.66 16 25 O -0.17 -2.70 18.45 -29.46 -0.54 -3.25 16 26 O -0.16 -2.18 13.44 -29.46 -0.40 -2.58 16 27 H 0.06 0.63 6.54 -51.93 -0.34 0.29 16 28 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.10 1.02 5.96 -51.93 -0.31 0.71 16 31 H 0.08 0.54 8.01 -51.93 -0.42 0.13 16 32 H 0.15 0.97 8.04 -52.49 -0.42 0.55 16 33 H 0.15 1.52 6.48 -52.48 -0.34 1.18 16 34 H 0.40 6.95 6.26 -40.82 -0.26 6.70 16 35 H 0.02 0.48 8.10 -51.92 -0.42 0.06 16 36 H 0.12 3.18 5.80 -51.93 -0.30 2.87 16 37 H 0.26 6.69 8.32 -40.82 -0.34 6.35 16 38 H 0.08 1.67 8.14 -51.92 -0.42 1.24 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.16 2.65 7.22 -52.49 -0.38 2.27 16 LS Contribution 355.21 15.07 5.35 5.35 Total: -1.00 -28.04 355.21 -9.34 -37.38 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.27 Total: 9.16 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -3.96 Total: -13.61 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 0.40 Total: -34.30 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.85 Total: -18.25 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.04 -9.34 -37.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431150121.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.957 kcal (2) G-P(sol) polarization free energy of solvation -28.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds