Wall clock time and date at job start Tue Mar 31 2020 13:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38249 * 120.00123 * 2 1 4 4 C 1.50709 * 119.99911 * 359.97438 * 3 2 1 5 5 C 1.50692 * 109.46959 * 85.00419 * 4 3 2 6 6 O 1.21281 * 120.00316 * 359.97438 * 5 4 3 7 7 N 1.34774 * 119.99986 * 180.02562 * 5 4 3 8 8 C 1.46494 * 120.00524 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47544 * 184.79868 * 8 7 5 10 10 C 1.50699 * 115.55174 * 295.58593 * 9 8 7 11 11 H 1.07994 * 120.00008 * 95.16827 * 10 9 8 12 12 C 1.37879 * 119.99950 * 274.89099 * 10 9 8 13 13 N 1.31513 * 120.00027 * 355.42000 * 12 10 9 14 14 Si 1.86803 * 119.99710 * 175.41208 * 12 10 9 15 15 H 1.48500 * 109.46873 * 60.00844 * 14 12 10 16 16 H 1.48503 * 109.47159 * 180.02562 * 14 12 10 17 17 H 1.48490 * 109.47626 * 300.00335 * 14 12 10 18 18 C 1.53000 * 117.49902 * 81.26048 * 9 8 7 19 19 C 1.53001 * 117.50005 * 149.91752 * 9 8 7 20 20 C 1.38217 * 120.00232 * 180.25755 * 3 2 1 21 21 C 1.38255 * 119.99409 * 359.50771 * 20 3 2 22 22 C 1.38214 * 120.00240 * 0.44775 * 21 20 3 23 23 C 1.38213 * 119.99647 * 179.97438 * 2 1 3 24 24 N 1.48023 * 120.00213 * 359.97438 * 23 2 1 25 25 O 1.21795 * 119.99900 * 217.46012 * 24 23 2 26 26 O 1.21801 * 119.99713 * 37.46536 * 24 23 2 27 27 H 1.08997 * 109.47190 * 95.28842 * 1 2 3 28 28 H 1.09001 * 109.47033 * 215.29324 * 1 2 3 29 29 H 1.08999 * 109.47021 * 335.28279 * 1 2 3 30 30 H 1.09000 * 109.46962 * 324.99816 * 4 3 2 31 31 H 1.09003 * 109.46381 * 205.00185 * 4 3 2 32 32 H 0.97000 * 119.99858 * 359.97438 * 7 5 4 33 33 H 1.09008 * 109.47151 * 64.80093 * 8 7 5 34 34 H 1.08997 * 109.47263 * 304.80117 * 8 7 5 35 35 H 0.97001 * 119.99718 * 185.00553 * 13 12 10 36 36 H 1.08998 * 117.49907 * 215.00543 * 18 9 8 37 37 H 1.08998 * 117.49611 * 0.02562 * 18 9 8 38 38 H 1.09008 * 117.49893 * 359.97438 * 19 9 8 39 39 H 1.08999 * 117.50611 * 144.97599 * 19 9 8 40 40 H 1.07997 * 119.99832 * 179.72895 * 20 3 2 41 41 H 1.08001 * 119.99805 * 180.27585 * 21 20 3 42 42 H 1.07997 * 119.99756 * 179.82969 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 1.4448 2.5024 -0.0006 5 6 1.0860 2.8759 1.4145 6 8 1.4097 2.1532 2.3331 7 7 0.4043 4.0125 1.6594 8 6 0.0549 4.3753 3.0350 9 6 -0.8123 5.6357 3.0255 10 6 -0.1417 6.8823 2.5082 11 1 -0.2589 7.1688 1.4736 12 6 0.6167 7.6600 3.3573 13 7 0.6818 7.3649 4.6373 14 14 1.5519 9.1327 2.6895 15 1 0.5953 10.0926 2.0823 16 1 2.2849 9.7973 3.7969 17 1 2.5194 8.6788 1.6585 18 6 -2.3047 5.4642 2.7355 19 6 -1.8337 5.7990 4.1528 20 6 3.5805 1.1973 -0.0054 21 6 4.2717 -0.0001 -0.0005 22 6 3.5806 -1.1970 0.0005 23 6 2.1981 -1.1970 0.0005 24 7 1.4579 -2.4789 0.0017 25 8 1.8787 -3.4245 0.6437 26 8 0.4281 -2.5880 -0.6395 27 1 -0.3633 -0.0947 -1.0233 28 1 -0.3633 -0.8388 0.5938 29 1 -0.3633 0.9335 0.4297 30 1 0.5343 2.3960 -0.5904 31 1 2.0700 3.2826 -0.4349 32 1 0.1450 4.5903 0.9247 33 1 0.9657 4.5653 3.6031 34 1 -0.4978 3.5575 3.4973 35 1 1.1553 7.9523 5.2469 36 1 -2.8015 6.2528 2.1705 37 1 -2.6688 4.4533 2.5519 38 1 -1.8881 5.0082 4.9011 39 1 -2.0204 6.8079 4.5207 40 1 4.1204 2.1326 -0.0098 41 1 5.3517 -0.0001 -0.0002 42 1 4.1206 -2.1323 0.0015 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431156243.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:29 Heat of formation + Delta-G solvation = 0.757520 kcal Electronic energy + Delta-G solvation = -26171.477467 eV Core-core repulsion = 22313.331590 eV Total energy + Delta-G solvation = -3858.145877 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.33779 -40.31481 -38.84377 -36.78378 -36.65676 -33.83909 -33.45870 -33.01407 -32.05393 -29.19440 -27.72235 -26.26793 -25.98381 -25.06407 -22.32384 -21.81925 -21.22478 -19.98036 -19.45606 -18.84586 -18.69962 -17.74002 -16.92833 -16.48644 -16.20503 -16.06902 -15.22047 -14.86892 -14.60001 -14.33937 -14.19751 -13.77339 -13.43138 -13.25144 -12.90593 -12.71665 -12.50521 -12.40700 -12.34283 -11.81145 -11.65381 -11.63045 -11.48951 -11.18344 -11.06748 -11.04443 -11.02504 -10.63175 -10.32188 -9.84340 -9.67016 -9.48330 -9.14404 -9.12994 -8.59213 -8.40686 -8.21083 -6.16461 -4.27273 -0.11249 0.72151 1.07706 1.31113 2.95644 2.98641 3.18660 3.25619 3.26194 3.73695 4.08633 4.15887 4.26377 4.42556 4.58405 4.68545 4.81666 5.06011 5.11013 5.11924 5.18178 5.28373 5.30742 5.36673 5.45049 5.58591 5.78797 5.80847 5.93177 5.97680 6.05452 6.24197 6.37252 6.39164 6.44969 6.61951 6.74978 7.03983 7.11379 7.28740 7.44557 7.54613 7.71488 8.09482 8.23757 8.65745 8.74545 9.40399 10.90498 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020035 B = 0.002983 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.220890 B = 9385.571941 C =10182.839485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.005 4.005 3 C -0.054 4.054 4 C -0.109 4.109 5 C 0.503 3.497 6 O -0.550 6.550 7 N -0.700 5.700 8 C 0.163 3.837 9 C 0.024 3.976 10 C -0.503 4.503 11 H 0.060 0.940 12 C 0.074 3.926 13 N -0.874 5.874 14 Si 0.891 3.109 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.211 4.211 19 C -0.142 4.142 20 C -0.056 4.056 21 C -0.119 4.119 22 C -0.062 4.062 23 C -0.041 4.041 24 N 0.028 4.972 25 O -0.163 6.163 26 O -0.152 6.152 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.402 0.598 33 H 0.068 0.932 34 H 0.040 0.960 35 H 0.263 0.737 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.341 -11.157 -11.993 16.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.006 4.006 3 C -0.055 4.055 4 C -0.149 4.149 5 C 0.288 3.712 6 O -0.429 6.429 7 N -0.349 5.349 8 C 0.040 3.960 9 C 0.023 3.977 10 C -0.541 4.541 11 H 0.078 0.922 12 C -0.131 4.131 13 N -0.509 5.509 14 Si 0.719 3.281 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.248 4.248 19 C -0.180 4.180 20 C -0.075 4.075 21 C -0.137 4.137 22 C -0.082 4.082 23 C -0.123 4.123 24 N 0.550 4.450 25 O -0.378 6.378 26 O -0.371 6.371 27 H 0.112 0.888 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.237 0.763 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.160 0.840 41 H 0.164 0.836 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.065 -11.003 -11.115 16.440 hybrid contribution 0.288 0.851 -0.428 0.995 sum 5.353 -10.152 -11.544 16.278 Atomic orbital electron populations 1.21077 0.88999 1.04332 1.04032 1.19519 0.97613 0.89958 0.93554 1.19208 0.93506 0.93059 0.99706 1.20793 1.02268 0.94862 0.97010 1.20211 0.79025 0.81933 0.90071 1.90711 1.54407 1.51690 1.46061 1.45990 1.55303 1.22237 1.11331 1.21024 0.99475 0.95103 0.80399 1.19027 0.85586 0.93372 0.99705 1.20302 1.30452 1.07110 0.96196 0.92210 1.24998 0.95815 0.97364 0.94892 1.69976 1.41608 1.36988 1.02357 0.86684 0.80190 0.82654 0.78601 1.20234 1.21245 1.20172 1.23023 1.01118 0.99407 1.01236 1.22469 1.04968 1.00786 0.89787 1.21482 0.93429 0.99276 0.93266 1.21090 1.00836 0.90749 1.01058 1.20883 0.90530 1.00633 0.96106 1.20802 0.92434 0.82917 1.16188 1.43596 1.00512 1.02575 0.98362 1.94543 1.71466 1.30944 1.40894 1.94521 1.12481 1.89451 1.40643 0.88763 0.90732 0.90067 0.87352 0.87125 0.76328 0.91407 0.94137 0.92729 0.90337 0.91746 0.91836 0.89472 0.83953 0.83616 0.83736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 7.99 36.01 0.29 -1.21 16 2 C -0.01 -0.06 5.87 -104.62 -0.61 -0.68 16 3 C -0.05 -0.62 4.37 -104.62 -0.46 -1.07 16 4 C -0.11 -1.18 5.14 -29.03 -0.15 -1.33 16 5 C 0.50 8.07 7.10 -10.99 -0.08 7.99 16 6 O -0.55 -11.09 16.03 5.56 0.09 -11.00 16 7 N -0.70 -12.01 5.47 -60.30 -0.33 -12.34 16 8 C 0.16 3.46 5.50 -4.05 -0.02 3.43 16 9 C 0.02 0.53 1.48 -155.66 -0.23 0.30 16 10 C -0.50 -12.25 8.56 -34.44 -0.29 -12.55 16 11 H 0.06 1.41 7.82 -52.49 -0.41 1.00 16 12 C 0.07 1.87 5.43 -17.82 -0.10 1.78 16 13 N -0.87 -23.40 12.65 55.43 0.70 -22.70 16 14 Si 0.89 19.65 29.54 -169.99 -5.02 14.62 16 15 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 18 C -0.21 -4.17 9.96 -26.70 -0.27 -4.44 16 19 C -0.14 -3.14 9.14 -26.70 -0.24 -3.39 16 20 C -0.06 -0.55 9.68 -39.58 -0.38 -0.94 16 21 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 22 C -0.06 -0.64 9.67 -39.58 -0.38 -1.03 16 23 C -0.04 -0.53 6.48 -79.95 -0.52 -1.04 16 24 N 0.03 0.40 4.13 33.96 0.14 0.54 16 25 O -0.16 -2.42 18.95 -29.46 -0.56 -2.98 16 26 O -0.15 -2.18 16.79 -29.46 -0.49 -2.67 16 27 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 0.96 6.90 -51.93 -0.36 0.60 16 29 H 0.08 0.95 5.92 -51.93 -0.31 0.65 16 30 H 0.11 0.93 6.89 -51.93 -0.36 0.57 16 31 H 0.11 0.93 8.05 -51.93 -0.42 0.51 16 32 H 0.40 6.15 8.31 -40.82 -0.34 5.81 16 33 H 0.07 1.66 8.14 -51.92 -0.42 1.24 16 34 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 35 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 36 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.06 1.35 8.14 -51.92 -0.42 0.92 16 39 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 40 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.15 0.82 8.06 -52.49 -0.42 0.39 16 42 H 0.14 1.22 8.01 -52.49 -0.42 0.80 16 LS Contribution 364.58 15.07 5.49 5.49 Total: -1.00 -30.44 364.58 -9.38 -39.82 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -5.55 Total: 6.82 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -3.85 Total: -15.61 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.51 Total: -34.50 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.96 Total: -16.65 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.44 -9.38 -39.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431156243.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.576 kcal (2) G-P(sol) polarization free energy of solvation -30.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds