Wall clock time and date at job start Tue Mar 31 2020 13:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38249 * 120.00123 * 2 1 4 4 C 1.50709 * 119.99911 * 359.97438 * 3 2 1 5 5 C 1.50692 * 109.46959 * 85.00419 * 4 3 2 6 6 O 1.21281 * 120.00316 * 359.97438 * 5 4 3 7 7 N 1.34774 * 119.99986 * 180.02562 * 5 4 3 8 8 C 1.46494 * 120.00524 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47544 * 184.79868 * 8 7 5 10 10 C 1.50699 * 115.55174 * 295.58593 * 9 8 7 11 11 H 1.07994 * 120.00008 * 95.16827 * 10 9 8 12 12 C 1.37879 * 119.99950 * 274.89099 * 10 9 8 13 13 N 1.31513 * 120.00027 * 355.42000 * 12 10 9 14 14 Si 1.86803 * 119.99710 * 175.41208 * 12 10 9 15 15 H 1.48500 * 109.46873 * 60.00844 * 14 12 10 16 16 H 1.48503 * 109.47159 * 180.02562 * 14 12 10 17 17 H 1.48490 * 109.47626 * 300.00335 * 14 12 10 18 18 C 1.53000 * 117.49902 * 81.26048 * 9 8 7 19 19 C 1.53001 * 117.50005 * 149.91752 * 9 8 7 20 20 C 1.38217 * 120.00232 * 180.25755 * 3 2 1 21 21 C 1.38255 * 119.99409 * 359.50771 * 20 3 2 22 22 C 1.38214 * 120.00240 * 0.44775 * 21 20 3 23 23 C 1.38213 * 119.99647 * 179.97438 * 2 1 3 24 24 N 1.48023 * 120.00213 * 359.97438 * 23 2 1 25 25 O 1.21795 * 119.99900 * 217.46012 * 24 23 2 26 26 O 1.21801 * 119.99713 * 37.46536 * 24 23 2 27 27 H 1.08997 * 109.47190 * 95.28842 * 1 2 3 28 28 H 1.09001 * 109.47033 * 215.29324 * 1 2 3 29 29 H 1.08999 * 109.47021 * 335.28279 * 1 2 3 30 30 H 1.09000 * 109.46962 * 324.99816 * 4 3 2 31 31 H 1.09003 * 109.46381 * 205.00185 * 4 3 2 32 32 H 0.97000 * 119.99858 * 359.97438 * 7 5 4 33 33 H 1.09008 * 109.47151 * 64.80093 * 8 7 5 34 34 H 1.08997 * 109.47263 * 304.80117 * 8 7 5 35 35 H 0.97001 * 119.99718 * 185.00553 * 13 12 10 36 36 H 1.08998 * 117.49907 * 215.00543 * 18 9 8 37 37 H 1.08998 * 117.49611 * 0.02562 * 18 9 8 38 38 H 1.09008 * 117.49893 * 359.97438 * 19 9 8 39 39 H 1.08999 * 117.50611 * 144.97599 * 19 9 8 40 40 H 1.07997 * 119.99832 * 179.72895 * 20 3 2 41 41 H 1.08001 * 119.99805 * 180.27585 * 21 20 3 42 42 H 1.07997 * 119.99756 * 179.82969 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 1.4448 2.5024 -0.0006 5 6 1.0860 2.8759 1.4145 6 8 1.4097 2.1532 2.3331 7 7 0.4043 4.0125 1.6594 8 6 0.0549 4.3753 3.0350 9 6 -0.8123 5.6357 3.0255 10 6 -0.1417 6.8823 2.5082 11 1 -0.2589 7.1688 1.4736 12 6 0.6167 7.6600 3.3573 13 7 0.6818 7.3649 4.6373 14 14 1.5519 9.1327 2.6895 15 1 0.5953 10.0926 2.0823 16 1 2.2849 9.7973 3.7969 17 1 2.5194 8.6788 1.6585 18 6 -2.3047 5.4642 2.7355 19 6 -1.8337 5.7990 4.1528 20 6 3.5805 1.1973 -0.0054 21 6 4.2717 -0.0001 -0.0005 22 6 3.5806 -1.1970 0.0005 23 6 2.1981 -1.1970 0.0005 24 7 1.4579 -2.4789 0.0017 25 8 1.8787 -3.4245 0.6437 26 8 0.4281 -2.5880 -0.6395 27 1 -0.3633 -0.0947 -1.0233 28 1 -0.3633 -0.8388 0.5938 29 1 -0.3633 0.9335 0.4297 30 1 0.5343 2.3960 -0.5904 31 1 2.0700 3.2826 -0.4349 32 1 0.1450 4.5903 0.9247 33 1 0.9657 4.5653 3.6031 34 1 -0.4978 3.5575 3.4973 35 1 1.1553 7.9523 5.2469 36 1 -2.8015 6.2528 2.1705 37 1 -2.6688 4.4533 2.5519 38 1 -1.8881 5.0082 4.9011 39 1 -2.0204 6.8079 4.5207 40 1 4.1204 2.1326 -0.0098 41 1 5.3517 -0.0001 -0.0002 42 1 4.1206 -2.1323 0.0015 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431156243.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:28 Heat of formation + Delta-G solvation = -15.727148 kcal Electronic energy + Delta-G solvation = -26172.192296 eV Core-core repulsion = 22313.331590 eV Total energy + Delta-G solvation = -3858.860706 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.36267 -41.32566 -40.05279 -38.44211 -37.73424 -34.95637 -34.70839 -33.95828 -33.86608 -30.21685 -28.73777 -27.77448 -27.10537 -26.63118 -23.28598 -22.98207 -22.65119 -21.39065 -21.01869 -19.87027 -19.75091 -18.75639 -18.36993 -17.76503 -17.30188 -16.95288 -16.71230 -16.54395 -15.99803 -15.51852 -15.21778 -14.97319 -14.67840 -14.31998 -14.19150 -13.93061 -13.69001 -13.48929 -13.31532 -13.24025 -12.99884 -12.88565 -12.77020 -12.73058 -12.39606 -12.32667 -12.24754 -12.04498 -12.02993 -11.42680 -11.04331 -10.93391 -10.46890 -10.42697 -10.09311 -9.94362 -9.83830 -8.08276 -6.23260 -1.08813 -0.07478 0.13124 0.35698 1.45674 1.46822 1.53327 1.71000 2.10934 2.43057 2.55486 3.19795 3.23120 3.35471 3.50754 3.68337 3.76390 3.94672 3.96833 4.08124 4.25129 4.32443 4.38944 4.48533 4.52833 4.55890 4.63743 4.65408 4.73324 4.81012 4.93489 4.99576 5.02007 5.03217 5.11282 5.22083 5.28344 5.54178 5.55819 5.59447 5.69833 5.79025 6.36928 6.44765 6.76378 6.85692 7.38237 7.47310 8.98312 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020035 B = 0.002983 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.220890 B = 9385.571941 C =10182.839485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.021 4.021 3 C -0.070 4.070 4 C -0.098 4.098 5 C 0.503 3.497 6 O -0.594 6.594 7 N -0.697 5.697 8 C 0.180 3.820 9 C 0.007 3.993 10 C -0.504 4.504 11 H 0.068 0.932 12 C 0.024 3.976 13 N -0.910 5.910 14 Si 0.950 3.050 15 H -0.271 1.271 16 H -0.296 1.296 17 H -0.266 1.266 18 C -0.176 4.176 19 C -0.159 4.159 20 C -0.055 4.055 21 C -0.110 4.110 22 C -0.065 4.065 23 C -0.065 4.065 24 N 0.029 4.971 25 O -0.190 6.190 26 O -0.157 6.157 27 H 0.113 0.887 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.135 0.865 31 H 0.144 0.856 32 H 0.414 0.586 33 H 0.026 0.974 34 H 0.033 0.967 35 H 0.258 0.742 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.169 0.831 41 H 0.183 0.817 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.353 -10.469 -14.584 18.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.022 4.022 3 C -0.071 4.071 4 C -0.137 4.137 5 C 0.291 3.709 6 O -0.476 6.476 7 N -0.347 5.347 8 C 0.055 3.945 9 C 0.006 3.994 10 C -0.542 4.542 11 H 0.087 0.913 12 C -0.177 4.177 13 N -0.547 5.547 14 Si 0.777 3.223 15 H -0.196 1.196 16 H -0.222 1.222 17 H -0.191 1.191 18 C -0.214 4.214 19 C -0.197 4.197 20 C -0.073 4.073 21 C -0.128 4.128 22 C -0.084 4.084 23 C -0.148 4.148 24 N 0.547 4.453 25 O -0.401 6.401 26 O -0.377 6.377 27 H 0.131 0.869 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.153 0.847 31 H 0.162 0.838 32 H 0.250 0.750 33 H 0.044 0.956 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.186 0.814 41 H 0.201 0.799 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 6.080 -10.340 -13.737 18.237 hybrid contribution -0.019 0.638 0.375 0.740 sum 6.061 -9.702 -13.362 17.590 Atomic orbital electron populations 1.21061 0.89048 1.03272 1.04806 1.19696 0.97925 0.90394 0.94225 1.19374 0.94445 0.92699 1.00562 1.20814 1.04167 0.95476 0.93207 1.21101 0.77348 0.80518 0.91951 1.90697 1.55852 1.52836 1.48210 1.45850 1.55835 1.23117 1.09855 1.20514 0.97182 0.94417 0.82341 1.19071 0.86874 0.93262 1.00190 1.20656 1.29674 1.07396 0.96452 0.91347 1.25727 0.96854 1.00075 0.95052 1.70120 1.42967 1.38074 1.03537 0.85736 0.79079 0.79743 0.77790 1.19646 1.22201 1.19058 1.23002 0.98857 1.00811 0.98684 1.22385 1.06613 0.99634 0.91098 1.21922 0.92967 1.00839 0.91560 1.21541 1.02572 0.89582 0.99073 1.21249 0.89675 1.02199 0.95284 1.21070 0.93385 0.81979 1.18325 1.43881 1.00442 1.03118 0.97866 1.94526 1.71835 1.31983 1.41752 1.94489 1.12944 1.89707 1.40569 0.86886 0.92702 0.90281 0.84692 0.83792 0.74961 0.95601 0.94848 0.93308 0.89581 0.89466 0.91671 0.91824 0.81379 0.79943 0.82269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 7.99 71.24 0.57 -2.26 16 2 C -0.02 -0.50 5.87 -19.87 -0.12 -0.61 16 3 C -0.07 -1.42 4.37 -19.86 -0.09 -1.51 16 4 C -0.10 -1.79 5.14 29.10 0.15 -1.64 16 5 C 0.50 15.33 7.10 87.65 0.62 15.95 16 6 O -0.59 -23.80 16.03 -3.03 -0.05 -23.84 16 7 N -0.70 -22.90 5.47 -463.08 -2.53 -25.44 16 8 C 0.18 7.67 5.50 86.38 0.48 8.15 16 9 C 0.01 0.30 1.48 -52.93 -0.08 0.22 16 10 C -0.50 -24.10 8.56 25.60 0.22 -23.88 16 11 H 0.07 3.09 7.82 -2.91 -0.02 3.07 16 12 C 0.02 1.19 5.43 84.66 0.46 1.65 16 13 N -0.91 -49.74 12.65 21.45 0.27 -49.47 16 14 Si 0.95 39.88 29.54 68.60 2.03 41.90 16 15 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 16 H -0.30 -12.74 7.11 99.48 0.71 -12.04 16 17 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 18 C -0.18 -6.68 9.96 30.62 0.30 -6.38 16 19 C -0.16 -7.09 9.14 30.62 0.28 -6.81 16 20 C -0.06 -0.88 9.68 22.27 0.22 -0.67 16 21 C -0.11 -1.54 10.05 22.27 0.22 -1.32 16 22 C -0.07 -1.22 9.67 22.27 0.22 -1.00 16 23 C -0.07 -1.61 6.48 36.37 0.24 -1.38 16 24 N 0.03 0.83 4.13 -46.46 -0.19 0.64 16 25 O -0.19 -5.79 18.95 18.89 0.36 -5.44 16 26 O -0.16 -4.53 16.79 18.88 0.32 -4.21 16 27 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.05 1.43 6.90 -2.39 -0.02 1.42 16 29 H 0.08 1.77 5.92 -2.39 -0.01 1.75 16 30 H 0.14 1.79 6.89 -2.39 -0.02 1.77 16 31 H 0.14 1.73 8.05 -2.39 -0.02 1.71 16 32 H 0.41 11.61 8.31 -92.71 -0.77 10.84 16 33 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.03 1.44 8.09 -2.39 -0.02 1.42 16 35 H 0.26 13.73 8.32 -92.71 -0.77 12.96 16 36 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 37 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 38 H 0.06 2.82 8.14 -2.38 -0.02 2.80 16 39 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 40 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 41 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 42 H 0.16 2.41 8.01 -2.91 -0.02 2.38 16 Total: -1.00 -68.36 364.58 4.17 -64.19 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.28 Total: 23.16 kcal Atomic # 6 Polarization: -25.18 SS G_CDS: 3.69 Total: -21.49 kcal Atomic # 7 Polarization: -71.81 SS G_CDS: -2.46 Total: -74.27 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: 0.63 Total: -33.49 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.90 kcal Total: -68.36 4.17 -64.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431156243.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.458 kcal (2) G-P(sol) polarization free energy of solvation -68.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds