Wall clock time and date at job start Tue Mar 31 2020 12:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38233 * 119.96543 * 2 1 4 4 C 1.38502 * 120.11877 * 180.02562 * 3 2 1 5 5 C 1.39324 * 119.94121 * 359.97426 * 4 3 2 6 6 C 1.38456 * 119.89541 * 359.72896 * 5 4 3 7 7 C 1.38790 * 119.96963 * 179.97438 * 2 1 3 8 8 N 1.40143 * 119.99860 * 359.97438 * 7 2 1 9 9 C 1.34776 * 119.99991 * 150.88591 * 8 7 2 10 10 O 1.21589 * 119.99701 * 4.58593 * 9 8 7 11 11 N 1.34772 * 119.99812 * 184.58384 * 9 8 7 12 12 C 1.46504 * 120.00141 * 175.09272 * 11 9 8 13 13 C 1.52992 * 109.47398 * 185.25940 * 12 11 9 14 14 C 1.50699 * 115.55176 * 66.97132 * 13 12 11 15 15 H 1.07994 * 120.00079 * 268.12549 * 14 13 12 16 16 C 1.37878 * 119.99806 * 88.12746 * 14 13 12 17 17 N 1.31508 * 119.99980 * 179.54269 * 16 14 13 18 18 Si 1.86801 * 120.00099 * 359.53572 * 16 14 13 19 19 H 1.48493 * 109.47094 * 91.77345 * 18 16 14 20 20 H 1.48498 * 109.47055 * 211.77714 * 18 16 14 21 21 H 1.48504 * 109.47137 * 331.77299 * 18 16 14 22 22 C 1.53007 * 117.49919 * 281.30326 * 13 12 11 23 23 C 1.53000 * 117.49830 * 212.64630 * 13 12 11 24 24 O 1.36513 * 108.63741 * 180.02562 * 5 4 3 25 25 C 1.43982 * 105.49755 * 342.70455 * 24 5 4 26 26 O 1.36601 * 131.45014 * 179.97438 * 4 3 2 27 27 H 1.08999 * 109.47404 * 270.02366 * 1 2 3 28 28 H 1.09001 * 109.47655 * 30.02156 * 1 2 3 29 29 H 1.08998 * 109.47402 * 150.02356 * 1 2 3 30 30 H 1.07997 * 119.93617 * 0.02562 * 3 2 1 31 31 H 1.07998 * 120.00876 * 180.29357 * 6 5 4 32 32 H 0.97002 * 119.99932 * 330.88679 * 8 7 2 33 33 H 0.97000 * 120.00194 * 355.37061 * 11 9 8 34 34 H 1.08998 * 109.47093 * 305.26418 * 12 11 9 35 35 H 1.09006 * 109.46469 * 65.25421 * 12 11 9 36 36 H 0.97001 * 120.00159 * 179.97438 * 17 16 14 37 37 H 1.09003 * 117.49581 * 359.97438 * 22 13 12 38 38 H 1.08996 * 117.50176 * 145.02002 * 22 13 12 39 39 H 1.09000 * 117.49802 * 214.97938 * 23 13 12 40 40 H 1.08998 * 117.49803 * 359.96868 * 23 13 12 41 41 H 1.08999 * 110.56691 * 268.59272 * 25 24 5 42 42 H 1.09003 * 110.56989 * 145.72365 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1975 0.0000 4 6 3.5824 1.2013 -0.0005 5 6 4.2810 -0.0042 -0.0005 6 6 3.5885 -1.2031 0.0057 7 6 2.2003 -1.2023 0.0005 8 7 1.4989 -2.4156 0.0016 9 6 2.0442 -3.5098 -0.5658 10 8 3.1775 -3.4664 -1.0042 11 7 1.3334 -4.6519 -0.6471 12 6 1.8839 -5.8083 -1.3584 13 6 0.8336 -6.9193 -1.4156 14 6 -0.3824 -6.6215 -2.2545 15 1 -1.2560 -6.1777 -1.8006 16 6 -0.3795 -6.9158 -3.6015 17 7 -1.4439 -6.6643 -4.3318 18 14 1.1364 -7.6715 -4.3892 19 1 1.0246 -9.1519 -4.3578 20 1 1.2431 -7.2129 -5.7976 21 1 2.3465 -7.2504 -3.6385 22 6 0.6340 -7.7682 -0.1585 23 6 1.3324 -8.3653 -1.3827 24 8 5.6189 0.2670 -0.0005 25 6 5.7329 1.6417 -0.4130 26 8 4.4839 2.2275 -0.0011 27 1 -0.3634 0.0004 1.0276 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5134 30 1 1.6558 2.1319 0.0004 31 1 4.1282 -2.1386 0.0105 32 1 0.6209 -2.4679 0.4107 33 1 0.4555 -4.7070 -0.2382 34 1 2.1581 -5.5148 -2.3717 35 1 2.7679 -6.1705 -0.8334 36 1 -1.4417 -6.8709 -5.2795 37 1 1.2513 -7.5354 0.7093 38 1 -0.3768 -8.1117 0.0616 39 1 0.7808 -9.1014 -1.9676 40 1 2.4088 -8.5251 -1.3208 41 1 5.8483 1.7086 -1.4948 42 1 6.5684 2.1254 0.0930 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432438765.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:37 Heat of formation + Delta-G solvation = -29.464438 kcal Electronic energy + Delta-G solvation = -26298.213204 eV Core-core repulsion = 22438.756804 eV Total energy + Delta-G solvation = -3859.456399 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.19131 -40.35325 -38.24099 -37.09787 -36.29601 -34.25438 -33.61900 -32.17469 -32.14424 -29.41188 -27.23336 -26.71389 -25.53193 -24.93368 -23.14633 -21.97941 -21.79431 -20.65112 -19.39948 -18.74545 -18.04129 -17.60258 -17.09252 -16.46510 -16.24405 -15.58797 -15.36309 -14.93449 -14.57762 -14.44370 -14.36339 -14.11712 -13.85624 -13.65850 -13.28271 -13.02012 -12.85585 -12.68554 -12.57022 -12.49596 -12.16660 -12.13298 -11.52679 -11.20691 -11.10344 -10.85922 -10.54783 -10.23997 -9.89650 -9.76896 -9.62922 -9.25565 -8.71578 -8.65241 -8.64433 -8.40873 -7.64823 -6.20325 -4.25426 1.05116 1.21556 2.55210 2.87761 3.25435 3.29476 3.36652 3.38936 3.41757 3.68269 4.35993 4.39760 4.48588 4.56730 4.72773 4.82029 4.86811 4.90455 5.08356 5.12046 5.29204 5.47690 5.56039 5.62025 5.68902 5.83263 5.95811 5.99889 6.01375 6.13294 6.15220 6.17311 6.34276 6.36536 6.39819 6.63697 6.67374 6.92619 6.99023 7.03253 7.12328 7.17478 7.62470 8.25344 8.35590 8.79083 8.79705 9.42627 10.90892 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019140 B = 0.003059 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.535601 B = 9150.522074 C = 9437.274579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.113 4.113 3 C -0.079 4.079 4 C 0.005 3.995 5 C 0.047 3.953 6 C -0.110 4.110 7 C 0.192 3.808 8 N -0.682 5.682 9 C 0.699 3.301 10 O -0.582 6.582 11 N -0.711 5.711 12 C 0.174 3.826 13 C -0.016 4.016 14 C -0.491 4.491 15 H 0.078 0.922 16 C 0.080 3.920 17 N -0.894 5.894 18 Si 0.879 3.121 19 H -0.278 1.278 20 H -0.294 1.294 21 H -0.257 1.257 22 C -0.179 4.179 23 C -0.191 4.191 24 O -0.308 6.308 25 C 0.214 3.786 26 O -0.313 6.313 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.137 0.863 31 H 0.164 0.836 32 H 0.410 0.590 33 H 0.401 0.599 34 H 0.066 0.934 35 H 0.044 0.956 36 H 0.266 0.734 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.906 14.148 10.409 18.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.116 4.116 3 C -0.099 4.099 4 C -0.040 4.040 5 C 0.002 3.998 6 C -0.131 4.131 7 C 0.095 3.905 8 N -0.330 5.330 9 C 0.399 3.601 10 O -0.460 6.460 11 N -0.363 5.363 12 C 0.050 3.950 13 C -0.018 4.018 14 C -0.529 4.529 15 H 0.096 0.904 16 C -0.123 4.123 17 N -0.531 5.531 18 Si 0.707 3.293 19 H -0.204 1.204 20 H -0.220 1.220 21 H -0.181 1.181 22 C -0.216 4.216 23 C -0.229 4.229 24 O -0.224 6.224 25 C 0.102 3.898 26 O -0.229 6.229 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.154 0.846 31 H 0.181 0.819 32 H 0.246 0.754 33 H 0.236 0.764 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.988 14.140 9.860 18.999 hybrid contribution 0.146 -0.392 -0.390 0.572 sum 8.134 13.748 9.470 18.570 Atomic orbital electron populations 1.20699 0.89780 1.03713 1.02552 1.19303 0.96448 0.90308 1.05570 1.19577 0.88755 0.98246 1.03275 1.19683 0.91981 0.85181 1.07149 1.19533 0.82325 0.94367 1.03555 1.20329 0.92295 0.97062 1.03408 1.16812 0.89743 0.84385 0.99558 1.42638 1.21960 1.07458 1.60911 1.16004 0.84854 0.80285 0.78910 1.90851 1.17421 1.83572 1.54191 1.45034 1.21446 1.11498 1.58298 1.21105 0.94337 0.84003 0.95575 1.19625 0.96584 0.87610 0.97937 1.20167 0.97675 1.42572 0.92440 0.90404 1.24971 0.95783 0.94518 0.97037 1.69876 1.28631 1.47376 1.07211 0.86850 0.84537 0.79583 0.78348 1.20425 1.22040 1.18088 1.22862 1.00737 1.06731 0.91268 1.22953 0.98514 0.98643 1.02811 1.87360 1.21042 1.29214 1.84784 1.25568 0.87616 0.76642 1.00009 1.87327 1.18703 1.31571 1.85313 0.90863 0.90853 0.90973 0.84560 0.81851 0.75352 0.76430 0.91534 0.93770 0.92437 0.90830 0.89360 0.89107 0.90629 0.90111 0.85438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.45 36.00 0.34 -0.61 16 2 C -0.11 -1.31 5.90 -104.42 -0.62 -1.92 16 3 C -0.08 -0.91 9.70 -39.49 -0.38 -1.30 16 4 C 0.00 0.06 7.15 -39.08 -0.28 -0.22 16 5 C 0.05 0.70 7.15 -39.10 -0.28 0.42 16 6 C -0.11 -1.73 8.76 -39.28 -0.34 -2.07 16 7 C 0.19 2.69 6.38 -83.63 -0.53 2.15 16 8 N -0.68 -9.24 4.89 -14.20 -0.07 -9.31 16 9 C 0.70 12.16 8.43 -86.92 -0.73 11.43 16 10 O -0.58 -12.06 13.45 5.29 0.07 -11.99 16 11 N -0.71 -12.33 5.49 -65.23 -0.36 -12.69 16 12 C 0.17 3.50 5.11 -4.04 -0.02 3.47 16 13 C -0.02 -0.34 0.79 -155.66 -0.12 -0.47 16 14 C -0.49 -12.49 9.37 -34.44 -0.32 -12.81 16 15 H 0.08 2.13 8.06 -52.49 -0.42 1.70 16 16 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 17 N -0.89 -25.98 13.96 55.43 0.77 -25.21 16 18 Si 0.88 21.04 24.79 -169.99 -4.21 16.83 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.26 -5.89 5.87 56.52 0.33 -5.56 16 22 C -0.18 -3.24 9.96 -26.69 -0.27 -3.51 16 23 C -0.19 -3.78 7.47 -26.69 -0.20 -3.98 16 24 O -0.31 -4.27 11.40 -45.73 -0.52 -4.79 16 25 C 0.21 2.12 8.89 101.05 0.90 3.02 16 26 O -0.31 -3.84 11.41 -46.02 -0.52 -4.37 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 29 H 0.07 0.66 7.06 -51.93 -0.37 0.29 16 30 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 31 H 0.16 2.89 5.78 -52.49 -0.30 2.59 16 32 H 0.41 4.21 7.60 -40.82 -0.31 3.90 16 33 H 0.40 6.18 8.50 -40.82 -0.35 5.83 16 34 H 0.07 1.51 7.00 -51.93 -0.36 1.15 16 35 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 36 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 39 H 0.09 1.89 7.09 -51.93 -0.37 1.52 16 40 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.13 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 347.91 15.07 5.24 5.24 Total: -1.00 -32.08 347.91 -8.05 -40.13 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -5.49 Total: 10.47 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -2.96 Total: -4.32 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 0.35 Total: -47.21 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.98 Total: -21.15 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.21 Total: 16.83 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.08 -8.05 -40.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432438765.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.665 kcal (2) G-P(sol) polarization free energy of solvation -32.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds