Wall clock time and date at job start Tue Mar 31 2020 12:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38233 * 119.96543 * 2 1 4 4 C 1.38502 * 120.11877 * 180.02562 * 3 2 1 5 5 C 1.39324 * 119.94121 * 359.97426 * 4 3 2 6 6 C 1.38456 * 119.89541 * 359.72896 * 5 4 3 7 7 C 1.38790 * 119.96963 * 179.97438 * 2 1 3 8 8 N 1.40143 * 119.99860 * 359.97438 * 7 2 1 9 9 C 1.34776 * 119.99991 * 150.88591 * 8 7 2 10 10 O 1.21589 * 119.99701 * 4.58593 * 9 8 7 11 11 N 1.34772 * 119.99812 * 184.58384 * 9 8 7 12 12 C 1.46504 * 120.00141 * 175.09272 * 11 9 8 13 13 C 1.52992 * 109.47398 * 185.25940 * 12 11 9 14 14 C 1.50699 * 115.55176 * 66.97132 * 13 12 11 15 15 H 1.07994 * 120.00079 * 268.12549 * 14 13 12 16 16 C 1.37878 * 119.99806 * 88.12746 * 14 13 12 17 17 N 1.31508 * 119.99980 * 179.54269 * 16 14 13 18 18 Si 1.86801 * 120.00099 * 359.53572 * 16 14 13 19 19 H 1.48493 * 109.47094 * 91.77345 * 18 16 14 20 20 H 1.48498 * 109.47055 * 211.77714 * 18 16 14 21 21 H 1.48504 * 109.47137 * 331.77299 * 18 16 14 22 22 C 1.53007 * 117.49919 * 281.30326 * 13 12 11 23 23 C 1.53000 * 117.49830 * 212.64630 * 13 12 11 24 24 O 1.36513 * 108.63741 * 180.02562 * 5 4 3 25 25 C 1.43982 * 105.49755 * 342.70455 * 24 5 4 26 26 O 1.36601 * 131.45014 * 179.97438 * 4 3 2 27 27 H 1.08999 * 109.47404 * 270.02366 * 1 2 3 28 28 H 1.09001 * 109.47655 * 30.02156 * 1 2 3 29 29 H 1.08998 * 109.47402 * 150.02356 * 1 2 3 30 30 H 1.07997 * 119.93617 * 0.02562 * 3 2 1 31 31 H 1.07998 * 120.00876 * 180.29357 * 6 5 4 32 32 H 0.97002 * 119.99932 * 330.88679 * 8 7 2 33 33 H 0.97000 * 120.00194 * 355.37061 * 11 9 8 34 34 H 1.08998 * 109.47093 * 305.26418 * 12 11 9 35 35 H 1.09006 * 109.46469 * 65.25421 * 12 11 9 36 36 H 0.97001 * 120.00159 * 179.97438 * 17 16 14 37 37 H 1.09003 * 117.49581 * 359.97438 * 22 13 12 38 38 H 1.08996 * 117.50176 * 145.02002 * 22 13 12 39 39 H 1.09000 * 117.49802 * 214.97938 * 23 13 12 40 40 H 1.08998 * 117.49803 * 359.96868 * 23 13 12 41 41 H 1.08999 * 110.56691 * 268.59272 * 25 24 5 42 42 H 1.09003 * 110.56989 * 145.72365 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1975 0.0000 4 6 3.5824 1.2013 -0.0005 5 6 4.2810 -0.0042 -0.0005 6 6 3.5885 -1.2031 0.0057 7 6 2.2003 -1.2023 0.0005 8 7 1.4989 -2.4156 0.0016 9 6 2.0442 -3.5098 -0.5658 10 8 3.1775 -3.4664 -1.0042 11 7 1.3334 -4.6519 -0.6471 12 6 1.8839 -5.8083 -1.3584 13 6 0.8336 -6.9193 -1.4156 14 6 -0.3824 -6.6215 -2.2545 15 1 -1.2560 -6.1777 -1.8006 16 6 -0.3795 -6.9158 -3.6015 17 7 -1.4439 -6.6643 -4.3318 18 14 1.1364 -7.6715 -4.3892 19 1 1.0246 -9.1519 -4.3578 20 1 1.2431 -7.2129 -5.7976 21 1 2.3465 -7.2504 -3.6385 22 6 0.6340 -7.7682 -0.1585 23 6 1.3324 -8.3653 -1.3827 24 8 5.6189 0.2670 -0.0005 25 6 5.7329 1.6417 -0.4130 26 8 4.4839 2.2275 -0.0011 27 1 -0.3634 0.0004 1.0276 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5134 30 1 1.6558 2.1319 0.0004 31 1 4.1282 -2.1386 0.0105 32 1 0.6209 -2.4679 0.4107 33 1 0.4555 -4.7070 -0.2382 34 1 2.1581 -5.5148 -2.3717 35 1 2.7679 -6.1705 -0.8334 36 1 -1.4417 -6.8709 -5.2795 37 1 1.2513 -7.5354 0.7093 38 1 -0.3768 -8.1117 0.0616 39 1 0.7808 -9.1014 -1.9676 40 1 2.4088 -8.5251 -1.3208 41 1 5.8483 1.7086 -1.4948 42 1 6.5684 2.1254 0.0930 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432438765.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:36 Heat of formation + Delta-G solvation = -51.989383 kcal Electronic energy + Delta-G solvation = -26299.189959 eV Core-core repulsion = 22438.756804 eV Total energy + Delta-G solvation = -3860.433154 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.14656 -41.61469 -39.47519 -38.58701 -37.25848 -35.50289 -35.03400 -34.19215 -33.07377 -30.48989 -28.39486 -27.97639 -27.12178 -26.07288 -24.24951 -23.36546 -22.91009 -21.96046 -21.09024 -19.89572 -19.34325 -18.50813 -18.31287 -18.02444 -17.25495 -17.01565 -16.70240 -16.50450 -15.81821 -15.71832 -15.53904 -15.16474 -15.01392 -14.86913 -14.71324 -14.46461 -14.26592 -13.98105 -13.74888 -13.55354 -13.27556 -13.08462 -12.92092 -12.69864 -12.52423 -12.17549 -12.13731 -11.96765 -11.58279 -11.19129 -10.98283 -10.82243 -10.64638 -10.36222 -9.99905 -9.60983 -8.67415 -8.29082 -6.34886 0.03114 0.18586 1.33823 1.40644 1.44229 1.51302 1.77580 2.08321 2.37090 2.49784 2.59871 3.05210 3.08094 3.41529 3.49954 3.81446 3.90626 3.96942 4.03610 4.06808 4.23806 4.37870 4.42797 4.45802 4.53224 4.54912 4.78090 4.79956 4.87873 4.89039 5.02794 5.06244 5.09348 5.11964 5.31479 5.33042 5.35861 5.50580 5.55979 5.59858 5.71041 5.96445 6.13034 6.29552 6.73650 6.99867 7.35675 7.45710 8.85355 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019140 B = 0.003059 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.535601 B = 9150.522074 C = 9437.274579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.098 4.098 3 C -0.075 4.075 4 C 0.003 3.997 5 C 0.026 3.974 6 C -0.132 4.132 7 C 0.172 3.828 8 N -0.665 5.665 9 C 0.698 3.302 10 O -0.618 6.618 11 N -0.707 5.707 12 C 0.184 3.816 13 C -0.039 4.039 14 C -0.476 4.476 15 H 0.049 0.951 16 C 0.027 3.973 17 N -0.944 5.944 18 Si 0.926 3.074 19 H -0.267 1.267 20 H -0.305 1.305 21 H -0.241 1.241 22 C -0.149 4.149 23 C -0.194 4.194 24 O -0.330 6.330 25 C 0.205 3.795 26 O -0.318 6.318 27 H 0.098 0.902 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.169 0.831 31 H 0.136 0.864 32 H 0.426 0.574 33 H 0.411 0.589 34 H 0.035 0.965 35 H 0.058 0.942 36 H 0.264 0.736 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.269 15.282 12.005 20.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.102 4.102 3 C -0.094 4.094 4 C -0.042 4.042 5 C -0.019 4.019 6 C -0.153 4.153 7 C 0.076 3.924 8 N -0.314 5.314 9 C 0.398 3.602 10 O -0.499 6.499 11 N -0.360 5.360 12 C 0.059 3.941 13 C -0.040 4.040 14 C -0.514 4.514 15 H 0.067 0.933 16 C -0.171 4.171 17 N -0.583 5.583 18 Si 0.753 3.247 19 H -0.193 1.193 20 H -0.233 1.233 21 H -0.165 1.165 22 C -0.186 4.186 23 C -0.232 4.232 24 O -0.247 6.247 25 C 0.094 3.906 26 O -0.234 6.234 27 H 0.116 0.884 28 H 0.110 0.890 29 H 0.085 0.915 30 H 0.186 0.814 31 H 0.153 0.847 32 H 0.266 0.734 33 H 0.247 0.753 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.123 0.877 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 8.333 15.293 11.507 20.874 hybrid contribution 0.026 -0.624 -0.813 1.025 sum 8.359 14.669 10.694 19.985 Atomic orbital electron populations 1.20819 0.87253 1.04350 1.04315 1.19640 0.98068 0.89210 1.03238 1.19996 0.88212 0.99452 1.01767 1.19941 0.92790 0.84819 1.06688 1.19654 0.82991 0.94760 1.04506 1.20211 0.93277 0.96474 1.05367 1.16991 0.89377 0.85143 1.00934 1.42361 1.22381 1.06455 1.60165 1.16118 0.84387 0.80883 0.78809 1.90842 1.19081 1.84232 1.55728 1.44865 1.21836 1.11123 1.58197 1.20797 0.94494 0.84351 0.94441 1.19439 0.95671 0.88867 1.00059 1.20370 0.98234 1.40270 0.92512 0.93312 1.25678 0.97919 0.95592 0.97956 1.70003 1.30791 1.50145 1.07400 0.86076 0.82353 0.79372 0.76942 1.19266 1.23319 1.16451 1.22893 1.01135 1.03482 0.91095 1.23027 0.99946 0.96725 1.03471 1.87319 1.20852 1.31347 1.85159 1.26084 0.87774 0.75113 1.01611 1.87306 1.19271 1.31446 1.85418 0.88401 0.89028 0.91540 0.81357 0.84667 0.73400 0.75299 0.94679 0.92427 0.92748 0.87717 0.89432 0.90360 0.88347 0.88533 0.81805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 9.45 71.23 0.67 -0.88 16 2 C -0.10 -2.07 5.90 -19.74 -0.12 -2.19 16 3 C -0.08 -1.55 9.70 22.33 0.22 -1.33 16 4 C 0.00 0.07 7.15 22.59 0.16 0.23 16 5 C 0.03 0.77 7.15 22.58 0.16 0.93 16 6 C -0.13 -4.27 8.76 22.46 0.20 -4.08 16 7 C 0.17 4.73 6.38 38.09 0.24 4.97 16 8 N -0.66 -17.60 4.89 -317.11 -1.55 -19.15 16 9 C 0.70 24.27 8.43 179.06 1.51 25.78 16 10 O -0.62 -26.25 13.45 -3.99 -0.05 -26.30 16 11 N -0.71 -24.09 5.49 -478.54 -2.63 -26.72 16 12 C 0.18 7.23 5.11 86.38 0.44 7.67 16 13 C -0.04 -1.59 0.79 -52.93 -0.04 -1.63 16 14 C -0.48 -24.36 9.37 25.60 0.24 -24.12 16 15 H 0.05 2.72 8.06 -2.91 -0.02 2.70 16 16 C 0.03 1.47 5.47 84.66 0.46 1.93 16 17 N -0.94 -56.41 13.96 21.45 0.30 -56.11 16 18 Si 0.93 43.55 24.79 68.60 1.70 45.25 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 20 H -0.31 -14.85 7.11 99.48 0.71 -14.15 16 21 H -0.24 -10.63 5.87 99.48 0.58 -10.05 16 22 C -0.15 -4.97 9.96 30.62 0.30 -4.67 16 23 C -0.19 -7.17 7.47 30.62 0.23 -6.94 16 24 O -0.33 -9.20 11.40 -76.21 -0.87 -10.07 16 25 C 0.20 3.78 8.89 113.37 1.01 4.78 16 26 O -0.32 -7.26 11.41 -77.24 -0.88 -8.15 16 27 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.09 1.00 8.09 -2.39 -0.02 0.98 16 29 H 0.07 1.04 7.06 -2.39 -0.02 1.02 16 30 H 0.17 2.35 8.06 -2.91 -0.02 2.32 16 31 H 0.14 5.11 5.78 -2.91 -0.02 5.10 16 32 H 0.43 8.13 7.60 -92.71 -0.70 7.42 16 33 H 0.41 12.22 8.50 -92.71 -0.79 11.44 16 34 H 0.03 1.59 7.00 -2.39 -0.02 1.58 16 35 H 0.06 2.12 8.08 -2.38 -0.02 2.10 16 36 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 37 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 38 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 39 H 0.08 3.11 7.09 -2.39 -0.02 3.09 16 40 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 41 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.16 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -72.36 347.91 1.17 -71.19 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: -0.53 Total: 29.59 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 5.69 Total: 0.47 kcal Atomic # 7 Polarization: -98.10 SS G_CDS: -3.88 Total: -101.98 kcal Atomic # 8 Polarization: -42.71 SS G_CDS: -1.80 Total: -44.52 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.70 Total: 45.25 kcal Total: -72.36 1.17 -71.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432438765.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.197 kcal (2) G-P(sol) polarization free energy of solvation -72.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds