Wall clock time and date at job start Tue Mar 31 2020 13:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34227 * 117.00016 * 2 1 4 4 O 1.20827 * 119.99814 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00142 * 179.97438 * 3 2 1 6 6 N 1.46496 * 109.47239 * 180.02562 * 5 3 2 7 7 C 1.36871 * 120.00364 * 270.00245 * 6 5 3 8 8 H 1.08001 * 120.00119 * 22.81368 * 7 6 5 9 9 C 1.39054 * 120.00212 * 202.81986 * 7 6 5 10 10 N 1.31356 * 119.99735 * 6.52690 * 9 7 6 11 11 Si 1.86802 * 119.99984 * 186.52924 * 9 7 6 12 12 H 1.48503 * 109.47056 * 64.99147 * 11 9 7 13 13 H 1.48490 * 109.46998 * 184.99360 * 11 9 7 14 14 H 1.48502 * 109.47102 * 304.99408 * 11 9 7 15 15 C 1.34776 * 119.99907 * 90.00448 * 6 5 3 16 16 O 1.21591 * 120.00183 * 242.18692 * 15 6 5 17 17 C 1.47729 * 120.00088 * 62.18631 * 15 6 5 18 18 C 1.40088 * 120.56550 * 9.91768 * 17 15 6 19 19 C 1.38334 * 118.28441 * 179.97438 * 18 17 15 20 20 C 1.38368 * 119.30963 * 0.02562 * 19 18 17 21 21 C 1.50696 * 119.45081 * 179.97438 * 20 19 18 22 22 C 1.53004 * 117.50193 * 343.62329 * 21 20 19 23 23 C 1.52997 * 117.50368 * 274.99980 * 21 20 19 24 24 N 1.31937 * 121.09380 * 359.97438 * 20 19 18 25 25 C 1.31673 * 121.88568 * 0.02562 * 24 20 19 26 26 C 1.50702 * 119.72126 * 180.27317 * 25 24 20 27 27 H 1.09001 * 109.47387 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46859 * 299.99772 * 1 2 3 29 29 H 1.08999 * 109.46951 * 59.99572 * 1 2 3 30 30 H 1.09004 * 109.47124 * 60.00324 * 5 3 2 31 31 H 1.09004 * 109.47635 * 300.00661 * 5 3 2 32 32 H 0.97007 * 119.99833 * 184.89623 * 10 9 7 33 33 H 1.08007 * 120.86021 * 359.96325 * 18 17 15 34 34 H 1.07997 * 120.34334 * 179.97438 * 19 18 17 35 35 H 1.09002 * 115.54879 * 129.32948 * 21 20 19 36 36 H 1.08994 * 117.49509 * 0.02562 * 22 21 20 37 37 H 1.09000 * 117.49279 * 145.01750 * 22 21 20 38 38 H 1.08995 * 117.50783 * 214.98177 * 23 21 20 39 39 H 1.08999 * 117.49617 * 359.97438 * 23 21 20 40 40 H 1.08997 * 109.47656 * 261.83027 * 26 25 24 41 41 H 1.08998 * 109.47219 * 21.83519 * 26 25 24 42 42 H 1.09000 * 109.47102 * 141.83066 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6797 0.0011 7 6 4.1761 3.3364 -1.1840 8 1 3.6935 2.9824 -2.0830 9 6 4.9951 4.4592 -1.2305 10 7 5.6828 4.8148 -0.1694 11 14 5.1172 5.4617 -2.8020 12 1 3.8004 6.0816 -3.0972 13 1 6.1385 6.5261 -2.6319 14 1 5.5096 4.5742 -3.9261 15 6 4.1723 3.3256 1.1685 16 8 3.4860 4.2891 1.4495 17 6 5.2153 2.8629 2.1069 18 6 6.1466 1.8926 1.7149 19 6 7.1032 1.4942 2.6313 20 6 7.1095 2.0608 3.8936 21 6 8.1498 1.6287 4.8945 22 6 8.9039 0.3275 4.6128 23 6 7.8547 0.3782 5.7252 24 7 6.2197 2.9730 4.2354 25 6 5.2897 3.3852 3.3993 26 6 4.3015 4.4344 3.8392 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 3.9564 0.7806 -0.8892 31 1 3.9558 0.7808 0.8908 32 1 6.1983 5.6365 -0.1785 33 1 6.1183 1.4663 0.7229 34 1 7.8370 0.7481 2.3644 35 1 8.7008 2.4355 5.3779 36 1 8.6478 -0.2157 3.7032 37 1 9.9513 0.2783 4.9107 38 1 8.2117 0.3620 6.7549 39 1 6.9078 -0.1318 5.5480 40 1 3.3742 3.9529 4.1497 41 1 4.7166 4.9968 4.6755 42 1 4.0987 5.1127 3.0103 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449956579.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:42 Heat of formation + Delta-G solvation = -27.510733 kcal Electronic energy + Delta-G solvation = -27329.087902 eV Core-core repulsion = 23469.716222 eV Total energy + Delta-G solvation = -3859.371680 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.24257 -39.77047 -38.26060 -36.71117 -35.88702 -34.58206 -32.32544 -31.85546 -31.27562 -28.56361 -27.22800 -26.41942 -25.28089 -23.89888 -22.60847 -21.55956 -21.10795 -20.42069 -19.55004 -17.33801 -17.13435 -16.60036 -16.35735 -15.94745 -15.59996 -15.25598 -15.08243 -14.75538 -14.16021 -13.94146 -13.71485 -13.63573 -13.06676 -13.04386 -12.63473 -12.33546 -11.93469 -11.84278 -11.68001 -11.57353 -11.53498 -11.49621 -11.29716 -11.13881 -11.00236 -10.66980 -10.48268 -10.39099 -10.38155 -10.29050 -9.99761 -9.21470 -9.11984 -9.04299 -8.28856 -8.10595 -7.59647 -6.27694 -3.77694 1.38179 1.84958 2.84069 3.08523 3.22861 3.30618 3.32232 3.65015 3.87984 4.19309 4.38682 4.53867 4.76816 4.87761 4.97978 5.16458 5.21797 5.28049 5.31797 5.38395 5.40333 5.50809 5.54261 5.61962 5.66740 5.71314 5.79148 5.82919 5.92550 6.06207 6.11850 6.14945 6.22364 6.35545 6.42899 6.69305 6.78056 6.84758 7.00914 7.30805 7.44089 7.94657 8.38360 8.53524 8.86167 9.15386 9.33345 9.80489 10.84879 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010270 B = 0.005295 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.684407 B = 5287.057157 C = 6752.775200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.372 6.372 3 C 0.421 3.579 4 O -0.480 6.480 5 C 0.142 3.858 6 N -0.525 5.525 7 C -0.288 4.288 8 H 0.083 0.917 9 C 0.027 3.973 10 N -0.881 5.881 11 Si 0.928 3.072 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.623 3.377 16 O -0.496 6.496 17 C -0.140 4.140 18 C -0.028 4.028 19 C -0.191 4.191 20 C 0.155 3.845 21 C -0.100 4.100 22 C -0.175 4.175 23 C -0.165 4.165 24 N -0.492 5.492 25 C 0.171 3.829 26 C -0.113 4.113 27 H 0.093 0.907 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.110 0.890 31 H 0.092 0.908 32 H 0.273 0.727 33 H 0.139 0.861 34 H 0.129 0.871 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.214 -11.747 5.529 13.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.290 6.290 3 C 0.259 3.741 4 O -0.363 6.363 5 C 0.013 3.987 6 N -0.252 5.252 7 C -0.415 4.415 8 H 0.101 0.899 9 C -0.175 4.175 10 N -0.521 5.521 11 Si 0.756 3.244 12 H -0.203 1.203 13 H -0.211 1.211 14 H -0.201 1.201 15 C 0.414 3.586 16 O -0.369 6.369 17 C -0.146 4.146 18 C -0.054 4.054 19 C -0.211 4.211 20 C 0.017 3.983 21 C -0.118 4.118 22 C -0.212 4.212 23 C -0.202 4.202 24 N -0.201 5.201 25 C 0.032 3.968 26 C -0.170 4.170 27 H 0.111 0.889 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.128 0.872 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.157 0.843 34 H 0.147 0.853 35 H 0.135 0.865 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.807 -10.362 6.540 12.386 hybrid contribution -0.012 0.338 -1.725 1.758 sum 1.795 -10.025 4.815 11.265 Atomic orbital electron populations 1.23104 0.77922 1.02660 1.02161 1.86533 1.22380 1.34965 1.85093 1.25828 0.94098 0.81117 0.73049 1.90700 1.66610 1.36133 1.42869 1.20540 0.86022 0.87594 1.04528 1.42228 1.71086 1.06771 1.05106 1.19203 1.24331 1.12403 0.85565 0.89894 1.25123 0.94692 0.99045 0.98677 1.69199 1.30049 1.23454 1.29444 0.85962 0.77876 0.79421 0.81144 1.20310 1.21106 1.20143 1.17116 0.80525 0.81902 0.79076 1.90420 1.44693 1.28701 1.73132 1.21319 1.00021 0.98052 0.95236 1.21752 0.91672 0.93082 0.98856 1.21737 1.01145 1.03639 0.94590 1.20227 0.93341 0.92569 0.92139 1.20715 0.98881 0.92061 1.00178 1.23069 0.97449 1.00030 1.00696 1.22928 1.00478 1.00453 0.96364 1.67172 1.03870 1.12778 1.36328 1.21388 0.92765 0.93951 0.88658 1.21121 0.95353 0.97119 1.03437 0.88857 0.92483 0.92382 0.87250 0.88990 0.91563 0.84292 0.85281 0.86521 0.88201 0.88374 0.88525 0.88772 0.91425 0.92252 0.86509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.56 101.05 1.07 1.53 16 2 O -0.37 -6.02 10.57 -39.25 -0.41 -6.44 16 3 C 0.42 8.27 8.02 36.00 0.29 8.56 16 4 O -0.48 -11.48 16.18 -18.75 -0.30 -11.78 16 5 C 0.14 2.65 5.32 -5.20 -0.03 2.63 16 6 N -0.52 -12.56 1.55 -117.21 -0.18 -12.74 16 7 C -0.29 -7.49 9.62 -15.00 -0.14 -7.63 16 8 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 9 C 0.03 0.73 5.29 -17.45 -0.09 0.64 16 10 N -0.88 -24.29 10.84 55.50 0.60 -23.69 16 11 Si 0.93 21.16 29.56 -169.99 -5.03 16.14 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 15 C 0.62 15.66 3.90 -12.38 -0.05 15.61 16 16 O -0.50 -13.99 13.69 5.29 0.07 -13.92 16 17 C -0.14 -3.10 5.37 -104.82 -0.56 -3.66 16 18 C -0.03 -0.52 8.64 -38.85 -0.34 -0.86 16 19 C -0.19 -3.15 9.34 -39.50 -0.37 -3.52 16 20 C 0.16 2.65 6.46 -82.50 -0.53 2.12 16 21 C -0.10 -1.32 6.21 -91.77 -0.57 -1.89 16 22 C -0.18 -1.77 9.79 -26.73 -0.26 -2.03 16 23 C -0.16 -1.78 10.23 -26.73 -0.27 -2.05 16 24 N -0.49 -9.69 10.17 -5.40 -0.05 -9.75 16 25 C 0.17 3.66 6.82 -82.15 -0.56 3.10 16 26 C -0.11 -2.32 9.10 36.01 0.33 -1.99 16 27 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 29 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 30 H 0.11 1.75 8.04 -51.93 -0.42 1.33 16 31 H 0.09 1.50 6.78 -51.93 -0.35 1.14 16 32 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.14 2.52 7.01 -52.48 -0.37 2.15 16 34 H 0.13 1.70 6.23 -52.49 -0.33 1.37 16 35 H 0.12 1.50 8.14 -51.93 -0.42 1.07 16 36 H 0.10 0.97 6.38 -51.93 -0.33 0.64 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.12 2.74 5.52 -51.93 -0.29 2.45 16 LS Contribution 357.91 15.07 5.39 5.39 Total: -1.00 -33.55 357.91 -7.44 -40.99 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.43 Total: 5.24 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: -2.10 Total: 10.55 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 0.36 Total: -46.18 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.65 Total: -32.14 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.55 -7.44 -40.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449956579.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.484 kcal (2) G-P(sol) polarization free energy of solvation -33.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds