Wall clock time and date at job start Tue Mar 31 2020 13:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34227 * 117.00016 * 2 1 4 4 O 1.20827 * 119.99814 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00142 * 179.97438 * 3 2 1 6 6 N 1.46496 * 109.47239 * 180.02562 * 5 3 2 7 7 C 1.36871 * 120.00364 * 270.00245 * 6 5 3 8 8 H 1.08001 * 120.00119 * 22.81368 * 7 6 5 9 9 C 1.39054 * 120.00212 * 202.81986 * 7 6 5 10 10 N 1.31356 * 119.99735 * 6.52690 * 9 7 6 11 11 Si 1.86802 * 119.99984 * 186.52924 * 9 7 6 12 12 H 1.48503 * 109.47056 * 64.99147 * 11 9 7 13 13 H 1.48490 * 109.46998 * 184.99360 * 11 9 7 14 14 H 1.48502 * 109.47102 * 304.99408 * 11 9 7 15 15 C 1.34776 * 119.99907 * 90.00448 * 6 5 3 16 16 O 1.21591 * 120.00183 * 242.18692 * 15 6 5 17 17 C 1.47729 * 120.00088 * 62.18631 * 15 6 5 18 18 C 1.40088 * 120.56550 * 9.91768 * 17 15 6 19 19 C 1.38334 * 118.28441 * 179.97438 * 18 17 15 20 20 C 1.38368 * 119.30963 * 0.02562 * 19 18 17 21 21 C 1.50696 * 119.45081 * 179.97438 * 20 19 18 22 22 C 1.53004 * 117.50193 * 343.62329 * 21 20 19 23 23 C 1.52997 * 117.50368 * 274.99980 * 21 20 19 24 24 N 1.31937 * 121.09380 * 359.97438 * 20 19 18 25 25 C 1.31673 * 121.88568 * 0.02562 * 24 20 19 26 26 C 1.50702 * 119.72126 * 180.27317 * 25 24 20 27 27 H 1.09001 * 109.47387 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46859 * 299.99772 * 1 2 3 29 29 H 1.08999 * 109.46951 * 59.99572 * 1 2 3 30 30 H 1.09004 * 109.47124 * 60.00324 * 5 3 2 31 31 H 1.09004 * 109.47635 * 300.00661 * 5 3 2 32 32 H 0.97007 * 119.99833 * 184.89623 * 10 9 7 33 33 H 1.08007 * 120.86021 * 359.96325 * 18 17 15 34 34 H 1.07997 * 120.34334 * 179.97438 * 19 18 17 35 35 H 1.09002 * 115.54879 * 129.32948 * 21 20 19 36 36 H 1.08994 * 117.49509 * 0.02562 * 22 21 20 37 37 H 1.09000 * 117.49279 * 145.01750 * 22 21 20 38 38 H 1.08995 * 117.50783 * 214.98177 * 23 21 20 39 39 H 1.08999 * 117.49617 * 359.97438 * 23 21 20 40 40 H 1.08997 * 109.47656 * 261.83027 * 26 25 24 41 41 H 1.08998 * 109.47219 * 21.83519 * 26 25 24 42 42 H 1.09000 * 109.47102 * 141.83066 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6797 0.0011 7 6 4.1761 3.3364 -1.1840 8 1 3.6935 2.9824 -2.0830 9 6 4.9951 4.4592 -1.2305 10 7 5.6828 4.8148 -0.1694 11 14 5.1172 5.4617 -2.8020 12 1 3.8004 6.0816 -3.0972 13 1 6.1385 6.5261 -2.6319 14 1 5.5096 4.5742 -3.9261 15 6 4.1723 3.3256 1.1685 16 8 3.4860 4.2891 1.4495 17 6 5.2153 2.8629 2.1069 18 6 6.1466 1.8926 1.7149 19 6 7.1032 1.4942 2.6313 20 6 7.1095 2.0608 3.8936 21 6 8.1498 1.6287 4.8945 22 6 8.9039 0.3275 4.6128 23 6 7.8547 0.3782 5.7252 24 7 6.2197 2.9730 4.2354 25 6 5.2897 3.3852 3.3993 26 6 4.3015 4.4344 3.8392 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 3.9564 0.7806 -0.8892 31 1 3.9558 0.7808 0.8908 32 1 6.1983 5.6365 -0.1785 33 1 6.1183 1.4663 0.7229 34 1 7.8370 0.7481 2.3644 35 1 8.7008 2.4355 5.3779 36 1 8.6478 -0.2157 3.7032 37 1 9.9513 0.2783 4.9107 38 1 8.2117 0.3620 6.7549 39 1 6.9078 -0.1318 5.5480 40 1 3.3742 3.9529 4.1497 41 1 4.7166 4.9968 4.6755 42 1 4.0987 5.1127 3.0103 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449956579.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:41 Heat of formation + Delta-G solvation = -47.489212 kcal Electronic energy + Delta-G solvation = -27329.954234 eV Core-core repulsion = 23469.716222 eV Total energy + Delta-G solvation = -3860.238012 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.78932 -41.24809 -39.88682 -37.83090 -37.40991 -36.40356 -34.03347 -33.51520 -32.79501 -30.05128 -28.79686 -27.82030 -26.86476 -25.45536 -23.64588 -22.75511 -22.67177 -21.80638 -21.12589 -19.08229 -18.67005 -18.12407 -17.64452 -17.39172 -17.04083 -16.98629 -16.65546 -15.98350 -15.87587 -15.57070 -15.16525 -15.05851 -14.47013 -14.40714 -13.98621 -13.80815 -13.57089 -13.41320 -13.38810 -13.08176 -12.91405 -12.84738 -12.84150 -12.68034 -12.54301 -12.21017 -12.10066 -11.74125 -11.68224 -11.47920 -11.30082 -11.04518 -10.62832 -10.58059 -10.08548 -9.59911 -9.45396 -8.24808 -5.77205 -0.12764 0.37142 1.29228 1.39691 1.46430 1.51053 1.69504 2.05588 2.39945 2.74591 2.99192 3.03222 3.26276 3.29709 3.79796 3.95896 3.97121 4.01871 4.10626 4.16225 4.23377 4.31944 4.34101 4.35187 4.39615 4.50372 4.63127 4.68871 4.72447 4.77428 4.82471 4.88433 5.00499 5.14666 5.25446 5.28693 5.34336 5.40937 5.42418 5.45821 5.80259 6.02289 6.85912 6.91300 7.06634 7.29289 7.49365 7.91015 8.85402 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010270 B = 0.005295 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.684407 B = 5287.057157 C = 6752.775200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.427 3.573 4 O -0.532 6.532 5 C 0.138 3.862 6 N -0.540 5.540 7 C -0.296 4.296 8 H 0.086 0.914 9 C -0.022 4.022 10 N -0.906 5.906 11 Si 0.984 3.016 12 H -0.290 1.290 13 H -0.289 1.289 14 H -0.253 1.253 15 C 0.621 3.379 16 O -0.547 6.547 17 C -0.169 4.169 18 C -0.026 4.026 19 C -0.180 4.180 20 C 0.159 3.841 21 C -0.131 4.131 22 C -0.151 4.151 23 C -0.157 4.157 24 N -0.506 5.506 25 C 0.152 3.848 26 C -0.104 4.104 27 H 0.140 0.860 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.142 0.858 31 H 0.119 0.881 32 H 0.263 0.737 33 H 0.148 0.852 34 H 0.171 0.829 35 H 0.118 0.882 36 H 0.108 0.892 37 H 0.122 0.878 38 H 0.116 0.884 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.107 -15.016 5.721 16.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C 0.268 3.732 4 O -0.420 6.420 5 C 0.011 3.989 6 N -0.268 5.268 7 C -0.423 4.423 8 H 0.104 0.896 9 C -0.221 4.221 10 N -0.548 5.548 11 Si 0.810 3.190 12 H -0.217 1.217 13 H -0.215 1.215 14 H -0.177 1.177 15 C 0.415 3.585 16 O -0.424 6.424 17 C -0.175 4.175 18 C -0.052 4.052 19 C -0.200 4.200 20 C 0.021 3.979 21 C -0.149 4.149 22 C -0.188 4.188 23 C -0.194 4.194 24 N -0.216 5.216 25 C 0.014 3.986 26 C -0.161 4.161 27 H 0.158 0.842 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.159 0.841 31 H 0.136 0.864 32 H 0.074 0.926 33 H 0.165 0.835 34 H 0.188 0.812 35 H 0.136 0.864 36 H 0.127 0.873 37 H 0.140 0.860 38 H 0.134 0.866 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.700 -13.712 6.719 15.712 hybrid contribution -0.644 1.191 -1.682 2.160 sum 3.056 -12.521 5.036 13.838 Atomic orbital electron populations 1.23471 0.75756 1.05549 1.01731 1.86506 1.24356 1.32714 1.84173 1.25881 0.94467 0.81223 0.71611 1.90692 1.67728 1.38007 1.45587 1.20884 0.85463 0.85338 1.07237 1.42377 1.71418 1.08747 1.04212 1.19466 1.23611 1.12838 0.86390 0.89643 1.25900 0.94914 1.00118 1.01212 1.69354 1.31038 1.23391 1.30993 0.85098 0.76801 0.78184 0.78896 1.21710 1.21504 1.17709 1.17702 0.80189 0.81040 0.79580 1.90396 1.46567 1.30836 1.74604 1.21133 1.00710 1.00462 0.95221 1.21914 0.91402 0.92212 0.99697 1.22138 1.00667 1.03619 0.93529 1.20996 0.92725 0.90835 0.93388 1.20796 0.99329 0.93646 1.01165 1.23238 0.98479 0.96458 1.00582 1.23027 1.00781 0.97888 0.97709 1.67240 1.04214 1.14002 1.36117 1.21439 0.93615 0.94461 0.89064 1.20919 0.95883 0.96821 1.02464 0.84218 0.93124 0.92768 0.84084 0.86369 0.92619 0.83463 0.81152 0.86378 0.87327 0.85950 0.86598 0.89382 0.91109 0.90750 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.56 113.37 1.20 1.89 16 2 O -0.36 -11.10 10.57 -51.39 -0.54 -11.64 16 3 C 0.43 16.70 8.02 71.23 0.57 17.27 16 4 O -0.53 -26.22 16.18 21.96 0.36 -25.86 16 5 C 0.14 5.04 5.32 85.63 0.46 5.49 16 6 N -0.54 -26.25 1.55 -643.01 -1.00 -27.25 16 7 C -0.30 -15.59 9.62 84.10 0.81 -14.78 16 8 H 0.09 4.32 7.84 -2.91 -0.02 4.30 16 9 C -0.02 -1.20 5.29 84.96 0.45 -0.75 16 10 N -0.91 -51.66 10.84 21.68 0.23 -51.43 16 11 Si 0.98 44.24 29.56 68.60 2.03 46.27 16 12 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 13 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 14 H -0.25 -10.31 7.11 99.48 0.71 -9.61 16 15 C 0.62 32.41 3.90 86.75 0.34 32.75 16 16 O -0.55 -32.81 13.69 -4.00 -0.05 -32.87 16 17 C -0.17 -7.62 5.37 -19.99 -0.11 -7.73 16 18 C -0.03 -0.97 8.64 22.74 0.20 -0.77 16 19 C -0.18 -5.44 9.34 22.32 0.21 -5.23 16 20 C 0.16 5.11 6.46 42.57 0.28 5.39 16 21 C -0.13 -3.05 6.21 -11.54 -0.07 -3.12 16 22 C -0.15 -2.32 9.79 30.59 0.30 -2.02 16 23 C -0.16 -2.80 10.23 30.59 0.31 -2.48 16 24 N -0.51 -19.76 10.17 -171.00 -1.74 -21.50 16 25 C 0.15 6.67 6.82 42.91 0.29 6.96 16 26 C -0.10 -4.49 9.10 71.24 0.65 -3.84 16 27 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.05 1.31 8.13 -2.39 -0.02 1.29 16 29 H 0.05 1.37 8.13 -2.39 -0.02 1.35 16 30 H 0.14 4.21 8.04 -2.38 -0.02 4.19 16 31 H 0.12 3.68 6.78 -2.38 -0.02 3.66 16 32 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 33 H 0.15 5.10 7.01 -2.91 -0.02 5.08 16 34 H 0.17 3.66 6.23 -2.91 -0.02 3.64 16 35 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 36 H 0.11 1.51 6.38 -2.39 -0.02 1.49 16 37 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.12 1.63 8.14 -2.39 -0.02 1.62 16 39 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 41 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 42 H 0.08 4.20 5.52 -2.39 -0.01 4.18 16 Total: -1.00 -77.74 357.91 6.21 -71.53 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 1.05 Total: 23.74 kcal Atomic # 6 Polarization: 23.14 SS G_CDS: 5.87 Total: 29.01 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -2.50 Total: -100.18 kcal Atomic # 8 Polarization: -70.13 SS G_CDS: -0.24 Total: -70.37 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -77.74 6.21 -71.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449956579.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.041 kcal (2) G-P(sol) polarization free energy of solvation -77.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds