Wall clock time and date at job start Tue Mar 31 2020 12:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86802 * 119.99669 * 2 1 4 4 H 1.48503 * 109.46941 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47132 * 299.99674 * 3 2 1 6 6 H 1.48502 * 109.47223 * 60.00195 * 3 2 1 7 7 C 1.38940 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99950 * 190.33667 * 7 2 1 9 9 N 1.37100 * 120.00195 * 10.34132 * 7 2 1 10 10 C 1.34769 * 120.00048 * 45.39869 * 9 7 2 11 11 O 1.21296 * 120.00041 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99975 * 180.02562 * 10 9 7 13 13 C 1.53002 * 109.47553 * 179.97438 * 12 10 9 14 14 N 1.46493 * 109.47425 * 179.97438 * 13 12 10 15 15 C 1.34783 * 119.99691 * 179.72126 * 14 13 12 16 16 O 1.21779 * 120.00257 * 0.28149 * 15 14 13 17 17 C 1.41554 * 119.99601 * 180.27107 * 15 14 13 18 18 C 1.35631 * 119.99370 * 172.65900 * 17 15 14 19 19 C 1.41599 * 120.00188 * 350.07481 * 18 17 15 20 20 C 1.37959 * 126.10091 * 140.17889 * 19 18 17 21 21 C 1.40312 * 106.52868 * 179.97438 * 20 19 18 22 22 C 1.35154 * 107.20502 * 359.97438 * 21 20 19 23 23 O 1.34020 * 109.03466 * 359.77295 * 22 21 20 24 24 C 1.46501 * 119.99808 * 225.40282 * 9 7 2 25 25 C 1.53005 * 117.50108 * 3.73666 * 24 9 7 26 26 C 1.52997 * 60.00243 * 252.51436 * 25 24 9 27 27 H 0.96998 * 119.99608 * 4.99055 * 1 2 3 28 28 H 1.09003 * 109.47265 * 59.99761 * 12 10 9 29 29 H 1.08998 * 109.47562 * 300.00170 * 12 10 9 30 30 H 1.09003 * 109.46996 * 59.99639 * 13 12 10 31 31 H 1.09005 * 109.46894 * 300.00246 * 13 12 10 32 32 H 0.96997 * 120.00378 * 0.02562 * 14 13 12 33 33 H 1.07996 * 120.00355 * 352.66909 * 17 15 14 34 34 H 1.08003 * 119.99783 * 170.08361 * 18 17 15 35 35 H 1.08004 * 126.73381 * 359.97438 * 20 19 18 36 36 H 1.07998 * 126.39790 * 179.97438 * 21 20 19 37 37 H 1.08002 * 125.48074 * 179.97438 * 22 21 20 38 38 H 1.09002 * 115.55046 * 149.45119 * 24 9 7 39 39 H 1.08999 * 117.49655 * 0.02562 * 25 24 9 40 40 H 1.09000 * 117.49789 * 145.01860 * 25 24 9 41 41 H 1.09002 * 117.49718 * 252.51027 * 26 25 24 42 42 H 1.08999 * 117.52060 * 107.47949 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7082 1.3465 0.0006 5 1 1.8894 2.3965 -1.2126 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0757 -1.2108 0.1684 9 7 1.3401 -2.3811 -0.2121 10 6 0.4366 -2.4727 -1.2079 11 8 0.2155 -1.5133 -1.9163 12 6 -0.2989 -3.7671 -1.4412 13 6 -1.2585 -3.6030 -2.6215 14 7 -1.9730 -4.8615 -2.8487 15 6 -2.8810 -4.9513 -3.8407 16 8 -3.1036 -3.9878 -4.5515 17 6 -3.5756 -6.1657 -4.0566 18 6 -4.5921 -6.2152 -4.9531 19 6 -5.0980 -5.0188 -5.5167 20 6 -5.4805 -4.8371 -6.8297 21 6 -5.9146 -3.5072 -6.9386 22 6 -5.7840 -2.9428 -5.7175 23 8 -5.2982 -3.8549 -4.8641 24 6 1.6076 -3.5400 0.6433 25 6 2.5784 -3.3478 1.8102 26 6 3.0076 -4.1544 0.5830 27 1 -0.4849 0.8369 -0.0731 28 1 -0.8647 -4.0298 -0.5473 29 1 0.4181 -4.5577 -1.6626 30 1 -0.6931 -3.3401 -3.5156 31 1 -1.9755 -2.8125 -2.3996 32 1 -1.7960 -5.6288 -2.2824 33 1 -3.2962 -7.0526 -3.5073 34 1 -5.0158 -7.1673 -5.2369 35 1 -5.4514 -5.5738 -7.6189 36 1 -6.2840 -3.0248 -7.8314 37 1 -6.0342 -1.9221 -5.4687 38 1 0.7668 -4.2172 0.7939 39 1 3.0177 -2.3589 1.9417 40 1 2.3762 -3.8984 2.7290 41 1 3.0878 -5.2357 0.6944 42 1 3.7294 -3.6966 -0.0933 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491302459.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:58 Heat of formation + Delta-G solvation = 14.379169 kcal Electronic energy + Delta-G solvation = -26028.503415 eV Core-core repulsion = 22170.948217 eV Total energy + Delta-G solvation = -3857.555198 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.34080 -39.63491 -38.57291 -36.23915 -34.92548 -33.97158 -32.80258 -32.77173 -31.12504 -30.24619 -28.58550 -25.61181 -24.21810 -22.45204 -21.70376 -21.60263 -21.13019 -20.95648 -19.69081 -18.93717 -17.84806 -16.70318 -16.22835 -16.06365 -15.79733 -15.44553 -15.31116 -14.68726 -14.30463 -14.25192 -14.12425 -13.83725 -13.52604 -13.06143 -12.80479 -12.68464 -12.51035 -12.43768 -12.27931 -11.93571 -11.23481 -11.06730 -11.01788 -10.87631 -10.85528 -10.42604 -10.16231 -10.12288 -9.99322 -9.84542 -9.76065 -9.68866 -8.74040 -8.72069 -8.00763 -7.94673 -7.01846 -6.03027 -3.90024 0.53472 2.16158 2.71201 3.23842 3.31167 3.38654 3.41474 3.49485 3.55513 4.13687 4.29413 4.68032 4.75896 4.84477 4.89901 5.03053 5.09046 5.23945 5.30479 5.42008 5.54906 5.62991 5.68228 5.70975 5.72690 5.77408 5.94537 5.97459 5.98337 6.13110 6.19553 6.23909 6.43832 6.49837 6.54692 6.55817 6.71705 6.79508 6.90965 7.25392 7.63198 7.73004 8.29267 8.46250 9.08786 9.16717 9.67080 10.30851 11.01704 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017242 B = 0.002949 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.589328 B = 9492.985767 C =10853.026683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.065 3.935 3 Si 0.910 3.090 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.285 1.285 7 C -0.340 4.340 8 H 0.077 0.923 9 N -0.432 5.432 10 C 0.486 3.514 11 O -0.521 6.521 12 C -0.145 4.145 13 C 0.140 3.860 14 N -0.725 5.725 15 C 0.532 3.468 16 O -0.525 6.525 17 C -0.199 4.199 18 C -0.002 4.002 19 C 0.008 3.992 20 C -0.184 4.184 21 C -0.229 4.229 22 C -0.013 4.013 23 O -0.134 6.134 24 C 0.076 3.924 25 C -0.175 4.175 26 C -0.208 4.208 27 H 0.263 0.737 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.396 0.604 33 H 0.137 0.863 34 H 0.154 0.846 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.198 0.802 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.602 -15.414 -5.735 18.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.146 4.146 3 Si 0.737 3.263 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.211 1.211 7 C -0.467 4.467 8 H 0.094 0.906 9 N -0.154 5.154 10 C 0.273 3.727 11 O -0.398 6.398 12 C -0.186 4.186 13 C 0.017 3.983 14 N -0.376 5.376 15 C 0.321 3.679 16 O -0.403 6.403 17 C -0.220 4.220 18 C -0.022 4.022 19 C -0.042 4.042 20 C -0.204 4.204 21 C -0.248 4.248 22 C -0.083 4.083 23 O -0.027 6.027 24 C -0.030 4.030 25 C -0.213 4.213 26 C -0.247 4.247 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.229 0.771 33 H 0.155 0.845 34 H 0.171 0.829 35 H 0.164 0.836 36 H 0.163 0.837 37 H 0.215 0.785 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.970 -14.004 -6.237 17.762 hybrid contribution 0.564 0.360 0.265 0.719 sum -8.407 -13.645 -5.972 17.103 Atomic orbital electron populations 1.69858 1.06255 1.27376 1.43019 1.25277 0.94965 0.99244 0.95065 0.86179 0.79658 0.82934 0.77531 1.19637 1.20714 1.21133 1.18910 0.91431 0.82818 1.53569 0.90564 1.42747 1.38549 1.08790 1.25296 1.19525 0.83230 0.88023 0.81933 1.90566 1.64194 1.38435 1.46576 1.21784 0.98707 0.99637 0.98500 1.21041 0.94562 0.84622 0.98079 1.46051 1.42025 1.15702 1.33840 1.17117 0.80680 0.88789 0.81355 1.90893 1.64784 1.38655 1.45971 1.22338 0.98855 0.99194 1.01638 1.20588 0.93801 0.94542 0.93266 1.19563 1.05966 0.86539 0.92128 1.22107 1.04539 0.97931 0.95791 1.21604 1.08971 0.95536 0.98684 1.24179 1.00493 0.94696 0.88933 1.84265 1.61804 1.18362 1.38251 1.21693 0.91536 0.92856 0.96931 1.23064 1.04431 1.02091 0.91682 1.23313 1.00988 0.98024 1.02398 0.92670 0.90355 0.90328 0.91028 0.90608 0.77089 0.84532 0.82891 0.83562 0.83693 0.78510 0.88041 0.87518 0.89829 0.89846 0.89132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.83 11.26 55.50 0.62 -24.21 16 2 C 0.06 1.82 4.64 -17.47 -0.08 1.74 16 3 Si 0.91 21.94 29.57 -169.99 -5.03 16.92 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.34 -9.24 7.89 -14.94 -0.12 -9.36 16 8 H 0.08 2.01 7.29 -52.49 -0.38 1.63 16 9 N -0.43 -10.65 2.84 -107.73 -0.31 -10.95 16 10 C 0.49 12.14 6.92 -10.99 -0.08 12.06 16 11 O -0.52 -15.39 13.54 5.54 0.08 -15.32 16 12 C -0.15 -2.64 4.43 -27.88 -0.12 -2.77 16 13 C 0.14 2.61 4.96 -4.04 -0.02 2.59 16 14 N -0.73 -10.35 5.55 -63.24 -0.35 -10.70 16 15 C 0.53 8.18 7.33 -14.99 -0.11 8.07 16 16 O -0.52 -10.32 12.56 -19.51 -0.24 -10.56 16 17 C -0.20 -2.14 9.85 -39.25 -0.39 -2.53 16 18 C 0.00 -0.02 9.94 -39.23 -0.39 -0.41 16 19 C 0.01 0.11 5.27 -38.40 -0.20 -0.09 16 20 C -0.18 -2.23 10.90 -38.90 -0.42 -2.65 16 21 C -0.23 -2.77 10.87 -39.90 -0.43 -3.20 16 22 C -0.01 -0.17 12.06 29.63 0.36 0.19 16 23 O -0.13 -2.12 7.95 -19.93 -0.16 -2.28 16 24 C 0.08 1.47 5.89 -67.92 -0.40 1.07 16 25 C -0.18 -3.07 9.80 -26.73 -0.26 -3.33 16 26 C -0.21 -3.43 10.35 -26.73 -0.28 -3.70 16 27 H 0.26 7.61 8.32 -40.82 -0.34 7.27 16 28 H 0.08 1.30 7.57 -51.93 -0.39 0.91 16 29 H 0.08 1.22 8.11 -51.93 -0.42 0.80 16 30 H 0.07 1.49 8.10 -51.93 -0.42 1.07 16 31 H 0.08 1.66 8.10 -51.93 -0.42 1.24 16 32 H 0.40 4.12 8.43 -40.82 -0.34 3.77 16 33 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.15 0.89 8.06 -52.48 -0.42 0.47 16 35 H 0.15 1.35 8.06 -52.48 -0.42 0.93 16 36 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.20 2.01 8.06 -52.49 -0.42 1.59 16 38 H 0.10 1.70 6.94 -51.93 -0.36 1.34 16 39 H 0.11 2.10 6.76 -51.93 -0.35 1.74 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 360.01 15.07 5.43 5.43 Total: -1.00 -37.39 360.01 -8.52 -45.90 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -5.61 Total: 8.10 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -2.95 Total: -2.32 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: -0.03 Total: -45.86 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.33 Total: -28.16 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -37.39 -8.52 -45.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491302459.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.283 kcal (2) G-P(sol) polarization free energy of solvation -37.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds