Wall clock time and date at job start Tue Mar 31 2020 12:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86802 * 119.99669 * 2 1 4 4 H 1.48503 * 109.46941 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47132 * 299.99674 * 3 2 1 6 6 H 1.48502 * 109.47223 * 60.00195 * 3 2 1 7 7 C 1.38940 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99950 * 190.33667 * 7 2 1 9 9 N 1.37100 * 120.00195 * 10.34132 * 7 2 1 10 10 C 1.34769 * 120.00048 * 45.39869 * 9 7 2 11 11 O 1.21296 * 120.00041 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99975 * 180.02562 * 10 9 7 13 13 C 1.53002 * 109.47553 * 179.97438 * 12 10 9 14 14 N 1.46493 * 109.47425 * 179.97438 * 13 12 10 15 15 C 1.34783 * 119.99691 * 179.72126 * 14 13 12 16 16 O 1.21779 * 120.00257 * 0.28149 * 15 14 13 17 17 C 1.41554 * 119.99601 * 180.27107 * 15 14 13 18 18 C 1.35631 * 119.99370 * 172.65900 * 17 15 14 19 19 C 1.41599 * 120.00188 * 350.07481 * 18 17 15 20 20 C 1.37959 * 126.10091 * 140.17889 * 19 18 17 21 21 C 1.40312 * 106.52868 * 179.97438 * 20 19 18 22 22 C 1.35154 * 107.20502 * 359.97438 * 21 20 19 23 23 O 1.34020 * 109.03466 * 359.77295 * 22 21 20 24 24 C 1.46501 * 119.99808 * 225.40282 * 9 7 2 25 25 C 1.53005 * 117.50108 * 3.73666 * 24 9 7 26 26 C 1.52997 * 60.00243 * 252.51436 * 25 24 9 27 27 H 0.96998 * 119.99608 * 4.99055 * 1 2 3 28 28 H 1.09003 * 109.47265 * 59.99761 * 12 10 9 29 29 H 1.08998 * 109.47562 * 300.00170 * 12 10 9 30 30 H 1.09003 * 109.46996 * 59.99639 * 13 12 10 31 31 H 1.09005 * 109.46894 * 300.00246 * 13 12 10 32 32 H 0.96997 * 120.00378 * 0.02562 * 14 13 12 33 33 H 1.07996 * 120.00355 * 352.66909 * 17 15 14 34 34 H 1.08003 * 119.99783 * 170.08361 * 18 17 15 35 35 H 1.08004 * 126.73381 * 359.97438 * 20 19 18 36 36 H 1.07998 * 126.39790 * 179.97438 * 21 20 19 37 37 H 1.08002 * 125.48074 * 179.97438 * 22 21 20 38 38 H 1.09002 * 115.55046 * 149.45119 * 24 9 7 39 39 H 1.08999 * 117.49655 * 0.02562 * 25 24 9 40 40 H 1.09000 * 117.49789 * 145.01860 * 25 24 9 41 41 H 1.09002 * 117.49718 * 252.51027 * 26 25 24 42 42 H 1.08999 * 117.52060 * 107.47949 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7082 1.3465 0.0006 5 1 1.8894 2.3965 -1.2126 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0757 -1.2108 0.1684 9 7 1.3401 -2.3811 -0.2121 10 6 0.4366 -2.4727 -1.2079 11 8 0.2155 -1.5133 -1.9163 12 6 -0.2989 -3.7671 -1.4412 13 6 -1.2585 -3.6030 -2.6215 14 7 -1.9730 -4.8615 -2.8487 15 6 -2.8810 -4.9513 -3.8407 16 8 -3.1036 -3.9878 -4.5515 17 6 -3.5756 -6.1657 -4.0566 18 6 -4.5921 -6.2152 -4.9531 19 6 -5.0980 -5.0188 -5.5167 20 6 -5.4805 -4.8371 -6.8297 21 6 -5.9146 -3.5072 -6.9386 22 6 -5.7840 -2.9428 -5.7175 23 8 -5.2982 -3.8549 -4.8641 24 6 1.6076 -3.5400 0.6433 25 6 2.5784 -3.3478 1.8102 26 6 3.0076 -4.1544 0.5830 27 1 -0.4849 0.8369 -0.0731 28 1 -0.8647 -4.0298 -0.5473 29 1 0.4181 -4.5577 -1.6626 30 1 -0.6931 -3.3401 -3.5156 31 1 -1.9755 -2.8125 -2.3996 32 1 -1.7960 -5.6288 -2.2824 33 1 -3.2962 -7.0526 -3.5073 34 1 -5.0158 -7.1673 -5.2369 35 1 -5.4514 -5.5738 -7.6189 36 1 -6.2840 -3.0248 -7.8314 37 1 -6.0342 -1.9221 -5.4687 38 1 0.7668 -4.2172 0.7939 39 1 3.0177 -2.3589 1.9417 40 1 2.3762 -3.8984 2.7290 41 1 3.0878 -5.2357 0.6944 42 1 3.7294 -3.6966 -0.0933 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491302459.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:57 Heat of formation + Delta-G solvation = -11.306754 kcal Electronic energy + Delta-G solvation = -26029.617241 eV Core-core repulsion = 22170.948217 eV Total energy + Delta-G solvation = -3858.669023 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.30863 -40.90052 -40.30167 -37.85777 -36.29420 -34.96418 -34.74233 -33.73821 -32.95165 -31.79197 -29.61795 -27.38828 -25.57558 -23.82640 -23.04845 -22.71983 -22.55740 -22.06465 -21.13512 -20.33187 -18.92941 -18.25656 -17.83857 -17.41072 -16.95232 -16.90659 -16.65585 -16.37764 -15.92871 -15.61357 -15.38920 -15.10495 -14.81403 -14.43172 -14.19592 -13.95869 -13.80474 -13.70314 -13.41226 -13.15726 -13.03062 -12.88343 -12.80601 -12.55463 -12.28611 -12.15529 -12.03251 -11.64577 -11.18807 -11.09386 -10.98057 -10.75041 -10.69629 -10.06489 -9.94924 -8.97094 -8.88957 -8.13014 -6.03108 -0.33974 1.19503 1.35041 1.40371 1.49026 1.77435 2.19897 2.30706 2.35925 2.42802 2.55516 3.13483 3.19104 3.39338 3.83854 3.91714 4.07700 4.12308 4.14754 4.16355 4.21060 4.23246 4.32811 4.50177 4.54498 4.63013 4.82506 4.87106 4.93695 4.95763 5.01068 5.07437 5.10013 5.17840 5.32650 5.39499 5.45582 5.47486 5.52151 5.69795 6.20551 6.30481 6.65539 7.05093 7.21505 7.35563 7.71055 8.38596 8.89577 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017242 B = 0.002949 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.589328 B = 9492.985767 C =10853.026683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.009 3.991 3 Si 0.967 3.033 4 H -0.256 1.256 5 H -0.296 1.296 6 H -0.275 1.275 7 C -0.344 4.344 8 H 0.077 0.923 9 N -0.449 5.449 10 C 0.466 3.534 11 O -0.584 6.584 12 C -0.122 4.122 13 C 0.159 3.841 14 N -0.709 5.709 15 C 0.521 3.479 16 O -0.578 6.578 17 C -0.207 4.207 18 C 0.008 3.992 19 C -0.019 4.019 20 C -0.190 4.190 21 C -0.232 4.232 22 C -0.044 4.044 23 O -0.167 6.167 24 C 0.046 3.954 25 C -0.175 4.175 26 C -0.179 4.179 27 H 0.255 0.745 28 H 0.103 0.897 29 H 0.118 0.882 30 H 0.040 0.960 31 H 0.030 0.970 32 H 0.419 0.581 33 H 0.187 0.813 34 H 0.205 0.795 35 H 0.176 0.824 36 H 0.168 0.832 37 H 0.212 0.788 38 H 0.134 0.866 39 H 0.077 0.923 40 H 0.119 0.881 41 H 0.129 0.871 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.116 -19.485 -5.136 21.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.179 1.179 5 H -0.223 1.223 6 H -0.200 1.200 7 C -0.472 4.472 8 H 0.095 0.905 9 N -0.169 5.169 10 C 0.255 3.745 11 O -0.465 6.465 12 C -0.163 4.163 13 C 0.034 3.966 14 N -0.362 5.362 15 C 0.312 3.688 16 O -0.460 6.460 17 C -0.227 4.227 18 C -0.011 4.011 19 C -0.069 4.069 20 C -0.209 4.209 21 C -0.251 4.251 22 C -0.114 4.114 23 O -0.062 6.062 24 C -0.059 4.059 25 C -0.213 4.213 26 C -0.217 4.217 27 H 0.064 0.936 28 H 0.122 0.878 29 H 0.136 0.864 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.257 0.743 33 H 0.204 0.796 34 H 0.222 0.778 35 H 0.194 0.806 36 H 0.186 0.814 37 H 0.228 0.772 38 H 0.151 0.849 39 H 0.096 0.904 40 H 0.137 0.863 41 H 0.147 0.853 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.440 -18.154 -5.576 20.782 hybrid contribution 0.451 1.579 0.037 1.642 sum -7.989 -16.575 -5.539 19.215 Atomic orbital electron populations 1.69985 1.07734 1.27353 1.45540 1.26110 0.95652 1.02601 0.95243 0.85291 0.79299 0.79149 0.77012 1.17936 1.22330 1.20019 1.19144 0.91716 0.84284 1.52078 0.90509 1.43014 1.38119 1.09676 1.26138 1.20631 0.83180 0.89555 0.81125 1.90528 1.66102 1.41136 1.48717 1.21585 0.98775 0.96883 0.99030 1.20484 0.93473 0.85633 0.97033 1.45767 1.41416 1.14761 1.34248 1.18026 0.80427 0.89855 0.80473 1.90883 1.66241 1.40956 1.47896 1.22479 0.99030 0.98358 1.02812 1.21283 0.92976 0.95116 0.91751 1.20417 1.06389 0.86976 0.93081 1.22561 1.03762 0.98454 0.96122 1.22007 1.08196 0.95912 0.98937 1.24693 1.01532 0.95514 0.89655 1.84230 1.62637 1.19622 1.39695 1.22075 0.94128 0.91995 0.97689 1.23125 1.03378 1.01562 0.93224 1.23328 0.97716 1.00204 1.00502 0.93603 0.87839 0.86395 0.94133 0.95158 0.74289 0.79601 0.77815 0.80624 0.81404 0.77191 0.84860 0.90444 0.86333 0.85343 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.42 11.26 21.66 0.24 -54.18 16 2 C 0.01 0.54 4.64 84.92 0.39 0.93 16 3 Si 0.97 46.58 29.57 68.60 2.03 48.60 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 6 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.34 -19.06 7.89 84.04 0.66 -18.40 16 8 H 0.08 4.12 7.29 -2.91 -0.02 4.10 16 9 N -0.45 -22.12 2.84 -613.12 -1.74 -23.86 16 10 C 0.47 23.75 6.92 87.66 0.61 24.35 16 11 O -0.58 -36.43 13.54 -3.08 -0.04 -36.48 16 12 C -0.12 -4.31 4.43 29.85 0.13 -4.18 16 13 C 0.16 6.11 4.96 86.38 0.43 6.54 16 14 N -0.71 -19.45 5.55 -472.17 -2.62 -22.07 16 15 C 0.52 15.75 7.33 85.06 0.62 16.37 16 16 O -0.58 -23.71 12.56 18.95 0.24 -23.47 16 17 C -0.21 -3.82 9.85 22.48 0.22 -3.60 16 18 C 0.01 0.14 9.94 22.50 0.22 0.36 16 19 C -0.02 -0.49 5.27 23.03 0.12 -0.37 16 20 C -0.19 -4.37 10.90 22.71 0.25 -4.13 16 21 C -0.23 -5.59 10.87 22.06 0.24 -5.35 16 22 C -0.04 -1.25 12.06 67.11 0.81 -0.44 16 23 O -0.17 -5.53 7.95 17.45 0.14 -5.39 16 24 C 0.05 1.65 5.89 44.99 0.26 1.91 16 25 C -0.18 -5.67 9.80 30.59 0.30 -5.37 16 26 C -0.18 -5.23 10.35 30.60 0.32 -4.91 16 27 H 0.25 15.59 8.32 -92.71 -0.77 14.82 16 28 H 0.10 3.16 7.57 -2.39 -0.02 3.14 16 29 H 0.12 3.25 8.11 -2.39 -0.02 3.23 16 30 H 0.04 1.79 8.10 -2.39 -0.02 1.77 16 31 H 0.03 1.43 8.10 -2.38 -0.02 1.41 16 32 H 0.42 7.33 8.43 -92.71 -0.78 6.55 16 33 H 0.19 1.48 8.06 -2.91 -0.02 1.45 16 34 H 0.21 1.32 8.06 -2.91 -0.02 1.29 16 35 H 0.18 2.78 8.06 -2.91 -0.02 2.76 16 36 H 0.17 3.05 8.06 -2.91 -0.02 3.02 16 37 H 0.21 4.74 8.06 -2.91 -0.02 4.72 16 38 H 0.13 3.90 6.94 -2.39 -0.02 3.88 16 39 H 0.08 2.98 6.76 -2.39 -0.02 2.96 16 40 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 41 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 42 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -90.96 360.01 4.10 -86.86 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 0.26 Total: 26.26 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 5.59 Total: 3.72 kcal Atomic # 7 Polarization: -95.99 SS G_CDS: -4.12 Total: -100.11 kcal Atomic # 8 Polarization: -65.67 SS G_CDS: 0.33 Total: -65.33 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -90.96 4.10 -86.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491302459.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.548 kcal (2) G-P(sol) polarization free energy of solvation -90.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds