Wall clock time and date at job start Tue Mar 31 2020 13:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47487 * 83.63939 * 3 2 1 5 5 C 1.36929 * 120.00068 * 269.99760 * 4 3 2 6 6 H 1.08003 * 120.00010 * 189.74411 * 5 4 3 7 7 C 1.38813 * 120.00279 * 9.75236 * 5 4 3 8 8 N 1.31623 * 119.99884 * 27.45957 * 7 5 4 9 9 Si 1.86798 * 120.00329 * 207.46144 * 7 5 4 10 10 H 1.48501 * 109.46931 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47178 * 119.99586 * 9 7 5 12 12 H 1.48497 * 109.47255 * 239.99763 * 9 7 5 13 13 C 1.46502 * 119.99872 * 89.99426 * 4 3 2 14 14 C 1.50698 * 109.47457 * 265.05603 * 13 4 3 15 15 O 1.21418 * 119.99764 * 0.02562 * 14 13 4 16 16 C 1.41553 * 120.00351 * 179.97438 * 14 13 4 17 17 N 1.38011 * 125.97437 * 0.30090 * 16 14 13 18 18 H 0.96993 * 125.36840 * 0.02562 * 17 16 14 19 19 C 1.34105 * 109.26376 * 180.17020 * 17 16 14 20 20 C 1.50696 * 125.65679 * 179.83401 * 19 17 16 21 21 C 1.38415 * 108.68461 * 359.57116 * 19 17 16 22 22 C 1.47277 * 126.40748 * 180.26104 * 21 19 17 23 23 O 1.21526 * 120.00376 * 90.03092 * 22 21 19 24 24 O 1.34763 * 120.00158 * 270.02560 * 22 21 19 25 25 C 1.45193 * 117.00197 * 179.97438 * 24 22 21 26 26 C 1.37820 * 125.98037 * 180.02562 * 16 14 13 27 27 C 1.50699 * 126.58970 * 0.02562 * 26 16 14 28 28 H 4.40639 * 5.51432 * 180.02562 * 4 1 2 29 29 H 1.09006 * 109.47407 * 323.63521 * 3 2 1 30 30 H 1.09008 * 109.46857 * 203.64135 * 3 2 1 31 31 H 0.96997 * 120.00050 * 180.02562 * 8 7 5 32 32 H 1.09009 * 109.46950 * 145.05479 * 13 4 3 33 33 H 1.09000 * 109.46932 * 25.06048 * 13 4 3 34 34 H 1.08998 * 109.47389 * 269.69587 * 20 19 17 35 35 H 1.09005 * 109.47322 * 149.69514 * 20 19 17 36 36 H 1.09006 * 109.47175 * 29.69654 * 20 19 17 37 37 H 1.09000 * 109.47109 * 179.97438 * 25 24 22 38 38 H 1.08997 * 109.47638 * 300.00336 * 25 24 22 39 39 H 1.09004 * 109.46928 * 60.00637 * 25 24 22 40 40 H 1.09001 * 109.46918 * 269.99801 * 27 26 16 41 41 H 1.09004 * 109.46879 * 29.99895 * 27 26 16 42 42 H 1.08991 * 109.47106 * 149.99967 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1344 -0.1521 -1.3727 5 6 3.3633 -1.4021 -1.8828 6 1 3.8687 -1.5143 -2.8306 7 6 2.9455 -2.5250 -1.1818 8 7 1.9137 -2.4469 -0.3683 9 14 3.8475 -4.1471 -1.3930 10 1 4.9639 -3.9709 -2.3563 11 1 4.3901 -4.5861 -0.0823 12 1 2.9061 -5.1736 -1.9079 13 6 3.3779 1.0324 -2.1996 14 6 2.1624 1.3137 -3.0447 15 8 1.1872 0.5949 -2.9638 16 6 2.1570 2.4166 -3.9321 17 7 3.1940 3.3065 -4.1256 18 1 4.0510 3.2771 -3.6724 19 6 2.8287 4.2202 -5.0367 20 6 3.6793 5.3656 -5.5220 21 6 1.5431 3.9332 -5.4617 22 6 0.7647 4.6845 -6.4611 23 8 0.8318 4.3822 -7.6362 24 8 -0.0222 5.7071 -6.0724 25 6 -0.7601 6.4029 -7.1114 26 6 1.1174 2.7864 -4.7579 27 6 -0.2174 2.0984 -4.8847 28 1 -1.0500 0.0002 -0.0001 29 1 3.0097 -0.8267 0.6093 30 1 3.0088 0.9423 0.4121 31 1 1.6220 -3.2315 0.1217 32 1 4.2368 0.8535 -2.8466 33 1 3.5796 1.8891 -1.5566 34 1 3.5048 6.2393 -4.8942 35 1 3.4172 5.6012 -6.5535 36 1 4.7312 5.0847 -5.4696 37 1 -1.3525 7.2010 -6.6640 38 1 -0.0607 6.8286 -7.8309 39 1 -1.4216 5.7010 -7.6194 40 1 -0.1602 1.3346 -5.6602 41 1 -0.4778 1.6326 -3.9343 42 1 -0.9795 2.8306 -5.1513 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491632714.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:51 Heat of formation + Delta-G solvation = 14.269913 kcal Electronic energy + Delta-G solvation = -26625.788275 eV Core-core repulsion = 22768.228339 eV Total energy + Delta-G solvation = -3857.559936 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.67235 -40.03671 -38.23711 -36.39305 -35.62895 -32.99066 -32.13492 -31.40197 -31.14121 -28.62121 -28.13537 -27.39170 -26.17662 -25.67858 -23.47864 -22.01226 -20.63125 -19.76911 -18.97604 -17.56646 -17.38431 -17.09312 -16.36827 -16.31842 -16.01085 -15.21202 -15.09448 -14.55387 -14.11324 -14.04420 -13.66511 -13.51428 -13.28999 -13.21138 -13.04742 -12.93274 -12.65395 -12.48028 -12.32501 -12.24120 -12.11544 -11.51173 -11.46991 -11.32197 -10.96407 -10.90395 -10.71488 -10.70099 -10.25955 -9.95423 -9.17278 -8.87163 -8.74834 -8.63735 -8.27222 -8.01571 -7.08332 -5.76414 -3.12857 1.42210 2.06957 2.09139 2.75494 3.16421 3.38498 3.47265 3.49242 3.60438 4.27162 4.51186 4.53180 4.64474 4.72612 4.81680 4.92464 4.94783 5.00577 5.20374 5.23874 5.29781 5.35779 5.41992 5.55402 5.59749 5.72036 5.89947 5.96802 6.00551 6.04014 6.13285 6.19743 6.25711 6.41011 6.61354 6.68958 6.91813 7.22615 7.31375 7.52526 7.69544 7.75683 8.19446 8.46517 9.08203 9.41148 9.74985 10.17094 11.25506 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020415 B = 0.003309 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.243465 B = 8458.801218 C = 8745.352480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 C -0.095 4.095 3 C 0.269 3.731 4 N -0.567 5.567 5 C -0.266 4.266 6 H 0.077 0.923 7 C 0.009 3.991 8 N -0.874 5.874 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.292 1.292 13 C 0.102 3.898 14 C 0.364 3.636 15 O -0.399 6.399 16 C -0.065 4.065 17 N -0.510 5.510 18 H 0.425 0.575 19 C 0.101 3.899 20 C -0.096 4.096 21 C -0.220 4.220 22 C 0.552 3.448 23 O -0.502 6.502 24 O -0.352 6.352 25 C 0.033 3.967 26 C -0.037 4.037 27 C -0.095 4.095 28 H 0.185 0.815 29 H 0.094 0.906 30 H 0.036 0.964 31 H 0.253 0.747 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.012 19.072 -7.671 20.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 C -0.098 4.098 3 C 0.144 3.856 4 N -0.285 5.285 5 C -0.395 4.395 6 H 0.094 0.906 7 C -0.191 4.191 8 N -0.516 5.516 9 Si 0.725 3.275 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.220 1.220 13 C -0.027 4.027 14 C 0.235 3.765 15 O -0.269 6.269 16 C -0.176 4.176 17 N -0.105 5.105 18 H 0.263 0.737 19 C -0.022 4.022 20 C -0.153 4.153 21 C -0.228 4.228 22 C 0.395 3.605 23 O -0.389 6.389 24 O -0.268 6.268 25 C -0.061 4.061 26 C -0.043 4.043 27 C -0.152 4.152 28 H 0.202 0.798 29 H 0.112 0.888 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.119 0.881 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.110 0.890 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.578 18.351 -7.751 19.983 hybrid contribution 0.219 -0.864 -0.380 0.969 sum 1.798 17.487 -8.130 19.368 Atomic orbital electron populations 1.24008 0.95184 1.07880 1.03913 1.23927 0.95003 0.94006 0.96855 1.17919 0.83363 0.98140 0.86135 1.44239 1.74231 1.01152 1.08862 1.19146 1.32272 0.81811 1.06249 0.90555 1.24802 0.96510 0.97609 1.00205 1.70258 1.21451 1.28826 1.31040 0.86343 0.79710 0.84129 0.77349 1.20358 1.21512 1.21966 1.21368 0.95145 0.91961 0.94228 1.22200 0.92091 0.81121 0.81097 1.90634 1.33878 1.42920 1.59517 1.20583 0.89571 0.99527 1.07873 1.41571 1.15298 1.21833 1.31823 0.73654 1.20436 0.94413 0.93725 0.93606 1.20525 0.98403 0.94148 1.02249 1.18210 0.95273 1.01768 1.07564 1.20387 0.76160 0.77010 0.86992 1.90839 1.62846 1.65930 1.19296 1.86707 1.55413 1.44136 1.40592 1.23276 0.95643 0.96466 0.90703 1.20046 0.96162 0.93978 0.94146 1.20437 0.90999 0.99325 1.04423 0.79752 0.88771 0.94562 0.93642 0.90654 0.91076 0.89732 0.89964 0.90429 0.88118 0.91971 0.91880 0.90930 0.89011 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.09 19.25 29.55 0.57 -6.52 16 2 C -0.09 -2.38 10.42 -37.13 -0.39 -2.77 16 3 C 0.27 6.29 5.50 -6.83 -0.04 6.25 16 4 N -0.57 -13.39 2.04 -177.95 -0.36 -13.75 16 5 C -0.27 -7.08 9.55 -15.06 -0.14 -7.22 16 6 H 0.08 2.01 7.97 -52.48 -0.42 1.59 16 7 C 0.01 0.24 4.80 -17.43 -0.08 0.15 16 8 N -0.87 -25.02 9.34 55.49 0.52 -24.50 16 9 Si 0.90 21.46 29.63 -169.99 -5.04 16.43 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 13 C 0.10 1.88 5.63 -5.19 -0.03 1.85 16 14 C 0.36 7.13 6.99 -33.05 -0.23 6.90 16 15 O -0.40 -9.65 13.63 5.44 0.07 -9.57 16 16 C -0.07 -1.07 6.76 -83.97 -0.57 -1.63 16 17 N -0.51 -6.03 5.87 -6.61 -0.04 -6.06 16 18 H 0.42 3.53 8.62 -40.82 -0.35 3.18 16 19 C 0.10 1.19 7.19 -81.54 -0.59 0.60 16 20 C -0.10 -0.72 10.23 36.00 0.37 -0.35 16 21 C -0.22 -3.25 6.00 -105.06 -0.63 -3.88 16 22 C 0.55 7.99 7.12 34.41 0.24 8.23 16 23 O -0.50 -8.26 16.90 -19.29 -0.33 -8.59 16 24 O -0.35 -4.38 10.58 -40.66 -0.43 -4.81 16 25 C 0.03 0.28 10.57 101.05 1.07 1.35 16 26 C -0.04 -0.62 6.25 -103.68 -0.65 -1.26 16 27 C -0.09 -1.57 9.61 36.01 0.35 -1.23 16 28 H 0.19 3.93 7.80 -54.09 -0.42 3.51 16 29 H 0.09 2.38 6.47 -51.93 -0.34 2.04 16 30 H 0.04 0.71 7.86 -51.92 -0.41 0.31 16 31 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.08 1.24 8.08 -51.92 -0.42 0.82 16 33 H 0.07 1.07 7.84 -51.93 -0.41 0.66 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.65 7.92 -51.93 -0.41 0.24 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.09 1.69 6.41 -51.93 -0.33 1.36 16 42 H 0.06 0.83 8.05 -51.93 -0.42 0.42 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -35.82 369.35 -6.38 -42.20 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.60 Total: 2.63 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -0.75 Total: 0.47 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.12 Total: -44.32 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.68 Total: -22.97 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.04 Total: 16.43 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.82 -6.38 -42.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491632714.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.469 kcal (2) G-P(sol) polarization free energy of solvation -35.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds