Wall clock time and date at job start Tue Mar 31 2020 13:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47487 * 83.63939 * 3 2 1 5 5 C 1.36929 * 120.00068 * 269.99760 * 4 3 2 6 6 H 1.08003 * 120.00010 * 189.74411 * 5 4 3 7 7 C 1.38813 * 120.00279 * 9.75236 * 5 4 3 8 8 N 1.31623 * 119.99884 * 27.45957 * 7 5 4 9 9 Si 1.86798 * 120.00329 * 207.46144 * 7 5 4 10 10 H 1.48501 * 109.46931 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47178 * 119.99586 * 9 7 5 12 12 H 1.48497 * 109.47255 * 239.99763 * 9 7 5 13 13 C 1.46502 * 119.99872 * 89.99426 * 4 3 2 14 14 C 1.50698 * 109.47457 * 265.05603 * 13 4 3 15 15 O 1.21418 * 119.99764 * 0.02562 * 14 13 4 16 16 C 1.41553 * 120.00351 * 179.97438 * 14 13 4 17 17 N 1.38011 * 125.97437 * 0.30090 * 16 14 13 18 18 H 0.96993 * 125.36840 * 0.02562 * 17 16 14 19 19 C 1.34105 * 109.26376 * 180.17020 * 17 16 14 20 20 C 1.50696 * 125.65679 * 179.83401 * 19 17 16 21 21 C 1.38415 * 108.68461 * 359.57116 * 19 17 16 22 22 C 1.47277 * 126.40748 * 180.26104 * 21 19 17 23 23 O 1.21526 * 120.00376 * 90.03092 * 22 21 19 24 24 O 1.34763 * 120.00158 * 270.02560 * 22 21 19 25 25 C 1.45193 * 117.00197 * 179.97438 * 24 22 21 26 26 C 1.37820 * 125.98037 * 180.02562 * 16 14 13 27 27 C 1.50699 * 126.58970 * 0.02562 * 26 16 14 28 28 H 4.40639 * 5.51432 * 180.02562 * 4 1 2 29 29 H 1.09006 * 109.47407 * 323.63521 * 3 2 1 30 30 H 1.09008 * 109.46857 * 203.64135 * 3 2 1 31 31 H 0.96997 * 120.00050 * 180.02562 * 8 7 5 32 32 H 1.09009 * 109.46950 * 145.05479 * 13 4 3 33 33 H 1.09000 * 109.46932 * 25.06048 * 13 4 3 34 34 H 1.08998 * 109.47389 * 269.69587 * 20 19 17 35 35 H 1.09005 * 109.47322 * 149.69514 * 20 19 17 36 36 H 1.09006 * 109.47175 * 29.69654 * 20 19 17 37 37 H 1.09000 * 109.47109 * 179.97438 * 25 24 22 38 38 H 1.08997 * 109.47638 * 300.00336 * 25 24 22 39 39 H 1.09004 * 109.46928 * 60.00637 * 25 24 22 40 40 H 1.09001 * 109.46918 * 269.99801 * 27 26 16 41 41 H 1.09004 * 109.46879 * 29.99895 * 27 26 16 42 42 H 1.08991 * 109.47106 * 149.99967 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1344 -0.1521 -1.3727 5 6 3.3633 -1.4021 -1.8828 6 1 3.8687 -1.5143 -2.8306 7 6 2.9455 -2.5250 -1.1818 8 7 1.9137 -2.4469 -0.3683 9 14 3.8475 -4.1471 -1.3930 10 1 4.9639 -3.9709 -2.3563 11 1 4.3901 -4.5861 -0.0823 12 1 2.9061 -5.1736 -1.9079 13 6 3.3779 1.0324 -2.1996 14 6 2.1624 1.3137 -3.0447 15 8 1.1872 0.5949 -2.9638 16 6 2.1570 2.4166 -3.9321 17 7 3.1940 3.3065 -4.1256 18 1 4.0510 3.2771 -3.6724 19 6 2.8287 4.2202 -5.0367 20 6 3.6793 5.3656 -5.5220 21 6 1.5431 3.9332 -5.4617 22 6 0.7647 4.6845 -6.4611 23 8 0.8318 4.3822 -7.6362 24 8 -0.0222 5.7071 -6.0724 25 6 -0.7601 6.4029 -7.1114 26 6 1.1174 2.7864 -4.7579 27 6 -0.2174 2.0984 -4.8847 28 1 -1.0500 0.0002 -0.0001 29 1 3.0097 -0.8267 0.6093 30 1 3.0088 0.9423 0.4121 31 1 1.6220 -3.2315 0.1217 32 1 4.2368 0.8535 -2.8466 33 1 3.5796 1.8891 -1.5566 34 1 3.5048 6.2393 -4.8942 35 1 3.4172 5.6012 -6.5535 36 1 4.7312 5.0847 -5.4696 37 1 -1.3525 7.2010 -6.6640 38 1 -0.0607 6.8286 -7.8309 39 1 -1.4216 5.7010 -7.6194 40 1 -0.1602 1.3346 -5.6602 41 1 -0.4778 1.6326 -3.9343 42 1 -0.9795 2.8306 -5.1513 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491632714.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:50 Heat of formation + Delta-G solvation = -7.740316 kcal Electronic energy + Delta-G solvation = -26626.742710 eV Core-core repulsion = 22768.228339 eV Total energy + Delta-G solvation = -3858.514371 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.78339 -41.09938 -39.74998 -37.43474 -37.41395 -34.18105 -33.43236 -33.26888 -32.72852 -29.60784 -29.54439 -28.34146 -27.93721 -27.14139 -24.73907 -23.50291 -21.92457 -20.85735 -20.18395 -19.41352 -18.52125 -18.35962 -18.10148 -17.34777 -17.13291 -16.84610 -16.41897 -15.81023 -15.69727 -15.56199 -15.08811 -14.70637 -14.54944 -14.48508 -14.22183 -14.09453 -14.03375 -13.73740 -13.39495 -13.23758 -13.17917 -13.14028 -12.99230 -12.74208 -12.60868 -12.46443 -12.19998 -11.88046 -11.81050 -11.79915 -10.90882 -10.65493 -10.48055 -10.15688 -9.99265 -9.16572 -8.97057 -7.79833 -5.15569 0.19016 0.98656 1.02554 1.47237 1.50887 1.59821 1.77968 2.16628 2.22875 2.40591 2.60369 2.70965 3.23212 3.48389 3.66826 3.83899 3.86431 3.94049 4.17896 4.20904 4.32832 4.34563 4.41938 4.55629 4.57940 4.63186 4.68875 4.71073 4.72678 4.75047 4.89099 4.95323 5.07774 5.12018 5.31732 5.34428 5.45941 5.63799 5.72072 5.74535 6.25360 6.42009 6.66139 6.98567 7.11555 7.51294 7.84038 8.21937 9.20581 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020415 B = 0.003309 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.243465 B = 8458.801218 C = 8745.352480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 C -0.112 4.112 3 C 0.268 3.732 4 N -0.580 5.580 5 C -0.263 4.263 6 H 0.075 0.925 7 C -0.045 4.045 8 N -0.905 5.905 9 Si 0.954 3.046 10 H -0.266 1.266 11 H -0.288 1.288 12 H -0.308 1.308 13 C 0.096 3.904 14 C 0.369 3.631 15 O -0.461 6.461 16 C -0.090 4.090 17 N -0.490 5.490 18 H 0.444 0.556 19 C 0.138 3.862 20 C -0.097 4.097 21 C -0.253 4.253 22 C 0.558 3.442 23 O -0.529 6.529 24 O -0.356 6.356 25 C 0.024 3.976 26 C -0.051 4.051 27 C -0.091 4.091 28 H 0.204 0.796 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.243 0.757 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.133 0.867 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.200 21.998 -8.510 23.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.328 4.328 2 C -0.115 4.115 3 C 0.142 3.858 4 N -0.298 5.298 5 C -0.393 4.393 6 H 0.093 0.907 7 C -0.242 4.242 8 N -0.549 5.549 9 Si 0.784 3.216 10 H -0.191 1.191 11 H -0.214 1.214 12 H -0.236 1.236 13 C -0.031 4.031 14 C 0.245 3.755 15 O -0.336 6.336 16 C -0.200 4.200 17 N -0.087 5.087 18 H 0.286 0.714 19 C 0.013 3.987 20 C -0.154 4.154 21 C -0.261 4.261 22 C 0.402 3.598 23 O -0.419 6.419 24 O -0.272 6.272 25 C -0.068 4.068 26 C -0.058 4.058 27 C -0.148 4.148 28 H 0.221 0.779 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.118 0.882 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.100 0.900 36 H 0.127 0.873 37 H 0.151 0.849 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.824 21.326 -8.589 23.306 hybrid contribution -0.468 -1.554 -0.240 1.641 sum 3.356 19.772 -8.828 21.912 Atomic orbital electron populations 1.24679 0.96239 1.07942 1.03924 1.24556 0.96034 0.94025 0.96932 1.17988 0.82482 0.99092 0.86189 1.44350 1.74066 1.01766 1.09615 1.19408 1.30851 0.83360 1.05681 0.90673 1.25448 0.97374 1.00406 1.00940 1.70415 1.23003 1.28861 1.32609 0.85419 0.78516 0.80453 0.77245 1.19050 1.21449 1.23589 1.21712 0.95145 0.91529 0.94754 1.22300 0.91297 0.81049 0.80870 1.90632 1.35843 1.45367 1.61732 1.19947 0.91237 1.00215 1.08605 1.41468 1.15101 1.20551 1.31540 0.71351 1.21120 0.93386 0.93258 0.90984 1.20772 0.99217 0.92981 1.02383 1.18404 0.96996 1.01989 1.08668 1.20329 0.75982 0.77109 0.86398 1.90821 1.63886 1.66852 1.20329 1.86688 1.55077 1.43561 1.41898 1.23632 0.95775 0.96824 0.90616 1.20189 0.96060 0.94775 0.94796 1.20325 0.92244 0.99424 1.02764 0.77878 0.91246 0.90514 0.94699 0.88172 0.86964 0.87245 0.90033 0.87350 0.84872 0.91032 0.92302 0.91749 0.91449 0.91107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -15.41 19.25 74.32 1.43 -13.98 16 2 C -0.11 -5.73 10.42 31.12 0.32 -5.41 16 3 C 0.27 12.42 5.50 84.57 0.47 12.88 16 4 N -0.58 -26.95 2.04 -716.89 -1.46 -28.41 16 5 C -0.26 -13.98 9.55 84.03 0.80 -13.18 16 6 H 0.08 3.92 7.97 -2.91 -0.02 3.90 16 7 C -0.05 -2.50 4.80 84.86 0.41 -2.09 16 8 N -0.90 -53.26 9.34 21.65 0.20 -53.06 16 9 Si 0.95 44.97 29.63 68.60 2.03 47.00 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 11 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 12 H -0.31 -15.13 7.11 99.48 0.71 -14.42 16 13 C 0.10 3.32 5.63 85.63 0.48 3.80 16 14 C 0.37 14.29 6.99 26.50 0.19 14.47 16 15 O -0.46 -22.95 13.63 -3.46 -0.05 -22.99 16 16 C -0.09 -2.83 6.76 38.89 0.26 -2.57 16 17 N -0.49 -9.93 5.87 -174.81 -1.03 -10.95 16 18 H 0.44 5.36 8.62 -92.71 -0.80 4.56 16 19 C 0.14 2.77 7.19 42.25 0.30 3.07 16 20 C -0.10 -0.97 10.23 71.23 0.73 -0.25 16 21 C -0.25 -7.07 6.00 -20.15 -0.12 -7.19 16 22 C 0.56 15.40 7.12 70.20 0.50 15.90 16 23 O -0.53 -16.97 16.90 19.75 0.33 -16.63 16 24 O -0.36 -8.22 10.58 -56.74 -0.60 -8.82 16 25 C 0.02 0.37 10.57 113.37 1.20 1.56 16 26 C -0.05 -1.70 6.25 -19.25 -0.12 -1.82 16 27 C -0.09 -3.13 9.61 71.24 0.68 -2.45 16 28 H 0.20 8.86 7.80 -4.42 -0.03 8.82 16 29 H 0.07 3.56 6.47 -2.38 -0.02 3.55 16 30 H 0.08 2.86 7.86 -2.38 -0.02 2.84 16 31 H 0.24 14.20 8.31 -92.71 -0.77 13.43 16 32 H 0.10 2.97 8.08 -2.38 -0.02 2.95 16 33 H 0.11 2.94 7.84 -2.39 -0.02 2.92 16 34 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.08 0.94 7.92 -2.38 -0.02 0.93 16 36 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 37 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.07 2.66 6.41 -2.39 -0.02 2.64 16 42 H 0.07 2.14 8.05 -2.39 -0.02 2.12 16 Total: -1.00 -81.52 369.35 7.22 -74.30 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.25 Total: 16.80 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 7.53 Total: 2.78 kcal Atomic # 7 Polarization: -90.14 SS G_CDS: -2.28 Total: -92.42 kcal Atomic # 8 Polarization: -48.14 SS G_CDS: -0.31 Total: -48.45 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -81.52 7.22 -74.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491632714.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.558 kcal (2) G-P(sol) polarization free energy of solvation -81.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds