Wall clock time and date at job start Tue Mar 31 2020 13:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35153 * 125.47891 * 2 1 4 4 C 1.40312 * 107.20549 * 179.72085 * 3 2 1 5 5 C 1.37952 * 106.52875 * 0.41032 * 4 3 2 6 6 C 1.41604 * 126.10755 * 179.84999 * 5 4 3 7 7 C 1.35623 * 119.99957 * 203.60233 * 6 5 4 8 8 C 1.41542 * 120.00281 * 19.73619 * 7 6 5 9 9 O 1.21772 * 120.00254 * 7.40134 * 8 7 6 10 10 N 1.34785 * 120.00205 * 187.40791 * 8 7 6 11 11 C 1.46966 * 120.59448 * 184.12019 * 10 8 7 12 12 C 1.53368 * 108.62926 * 235.20229 * 11 10 8 13 13 N 1.46962 * 108.63665 * 310.56869 * 12 11 10 14 14 C 1.34775 * 120.60019 * 235.20878 * 13 12 11 15 15 O 1.21685 * 119.99639 * 4.77595 * 14 13 12 16 16 C 1.46375 * 119.99924 * 184.78200 * 14 13 12 17 17 H 1.07999 * 120.00595 * 354.84963 * 16 14 13 18 18 C 1.40048 * 119.99500 * 174.85235 * 16 14 13 19 19 N 1.30668 * 120.00531 * 359.97438 * 18 16 14 20 20 Si 1.86807 * 119.99739 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46999 * 180.02562 * 20 18 16 22 22 H 1.48500 * 109.46988 * 299.99723 * 20 18 16 23 23 H 1.48494 * 109.47248 * 59.99713 * 20 18 16 24 24 C 1.46968 * 118.80752 * 55.48649 * 13 12 11 25 25 C 1.46963 * 120.59191 * 4.08764 * 10 8 7 26 26 O 1.34019 * 125.48576 * 179.97438 * 2 1 3 27 27 H 1.09008 * 109.46853 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47343 * 299.99798 * 1 2 3 29 29 H 1.09004 * 109.47048 * 60.00121 * 1 2 3 30 30 H 1.08007 * 126.39953 * 0.02562 * 3 2 1 31 31 H 1.08003 * 126.73817 * 180.26306 * 4 3 2 32 32 H 1.08000 * 119.99913 * 23.59511 * 6 5 4 33 33 H 1.08005 * 120.00050 * 199.73202 * 7 6 5 34 34 H 1.09000 * 109.60979 * 115.45861 * 11 10 8 35 35 H 1.09000 * 109.60637 * 354.94472 * 11 10 8 36 36 H 1.09010 * 109.60826 * 190.83215 * 12 11 10 37 37 H 1.09001 * 109.61379 * 70.32284 * 12 11 10 38 38 H 0.96996 * 120.00377 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.61363 * 64.26442 * 24 13 12 40 40 H 1.09001 * 109.61268 * 184.77648 * 24 13 12 41 41 H 1.08997 * 109.61163 * 244.54331 * 25 10 8 42 42 H 1.08998 * 109.60949 * 5.06070 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2914 1.1006 0.0000 4 6 3.6238 0.6606 0.0065 5 6 3.5818 -0.7182 0.0008 6 6 4.6999 -1.5871 0.0013 7 6 4.5766 -2.8511 -0.4745 8 6 3.5029 -3.1817 -1.3354 9 8 2.7687 -2.3064 -1.7570 10 7 3.2929 -4.4654 -1.6886 11 6 2.2389 -4.8133 -2.6519 12 6 1.3096 -5.8498 -2.0083 13 7 2.1308 -6.9266 -1.4375 14 6 1.9209 -8.2102 -1.7907 15 8 1.1049 -8.4784 -2.6526 16 6 2.6745 -9.2816 -1.1373 17 1 3.4567 -9.0399 -0.4330 18 6 2.3811 -10.6203 -1.4257 19 7 1.4344 -10.9130 -2.2775 20 14 3.3432 -11.9877 -0.5925 21 1 2.8436 -13.3037 -1.0656 22 1 4.7835 -11.8556 -0.9290 23 1 3.1678 -11.8909 0.8789 24 6 3.1811 -6.5793 -0.4700 25 6 4.1142 -5.5422 -1.1178 26 8 2.2849 -1.0913 0.0005 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.9555 2.1271 0.0004 31 1 4.5086 1.2800 0.0123 32 1 5.6509 -1.2432 0.3805 33 1 5.2979 -3.6055 -0.1966 34 1 2.6893 -5.2341 -3.5509 35 1 1.6689 -3.9204 -2.9088 36 1 0.6411 -6.2614 -2.7646 37 1 0.7256 -5.3772 -1.2185 38 1 1.2310 -11.8402 -2.4770 39 1 2.7274 -6.1574 0.4268 40 1 3.7491 -7.4726 -0.2100 41 1 4.6981 -6.0148 -1.9076 42 1 4.7826 -5.1306 -0.3616 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492916805.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:45 Heat of formation + Delta-G solvation = -10.685712 kcal Electronic energy + Delta-G solvation = -26692.862305 eV Core-core repulsion = 22834.220212 eV Total energy + Delta-G solvation = -3858.642093 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.46034 -40.01997 -37.99461 -35.86430 -34.26333 -33.15391 -33.03912 -32.48171 -31.47980 -30.72265 -27.68041 -26.84813 -25.81358 -23.68764 -22.90221 -21.78765 -21.61569 -20.37606 -19.37211 -18.36972 -17.69846 -16.39874 -16.28288 -15.97860 -15.62462 -15.30053 -14.94384 -14.56249 -14.40243 -14.27075 -13.99306 -13.92529 -13.30756 -13.12009 -13.02916 -12.94150 -12.76279 -12.64599 -12.33286 -11.94163 -11.78819 -11.62754 -11.37381 -11.16170 -10.99899 -10.93834 -10.71958 -10.28756 -10.21692 -10.09806 -9.75533 -9.57577 -8.92685 -8.54651 -7.81248 -7.66122 -7.23048 -6.25973 -4.72089 0.40750 2.12963 2.67351 3.02793 3.10904 3.16185 3.17707 3.29430 3.54301 4.03229 4.44617 4.50695 4.62621 4.73020 4.80706 4.94028 5.11652 5.26869 5.33073 5.33891 5.39533 5.45529 5.57945 5.59631 5.63584 5.67232 5.73557 5.87243 5.97526 6.00716 6.03805 6.11834 6.24839 6.29305 6.38686 6.50896 6.54794 6.82176 7.23806 7.38234 7.49761 7.66415 8.03898 8.25966 8.41920 8.95161 9.34567 10.50433 10.68786 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025988 B = 0.002920 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.150968 B = 9585.977990 C =10106.551681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.015 3.985 3 C -0.230 4.230 4 C -0.175 4.175 5 C 0.003 3.997 6 C 0.001 3.999 7 C -0.214 4.214 8 C 0.539 3.461 9 O -0.538 6.538 10 N -0.601 5.601 11 C 0.101 3.899 12 C 0.109 3.891 13 N -0.643 5.643 14 C 0.559 3.441 15 O -0.576 6.576 16 C -0.545 4.545 17 H 0.073 0.927 18 C 0.088 3.912 19 N -0.767 5.767 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.267 1.267 23 H -0.267 1.267 24 C 0.110 3.890 25 C 0.088 3.912 26 O -0.127 6.127 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.155 0.845 33 H 0.141 0.859 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.046 0.954 38 H 0.270 0.730 39 H 0.047 0.953 40 H 0.106 0.894 41 H 0.073 0.927 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.515 19.253 7.101 21.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.039 4.039 3 C -0.249 4.249 4 C -0.194 4.194 5 C -0.047 4.047 6 C -0.019 4.019 7 C -0.235 4.235 8 C 0.331 3.669 9 O -0.418 6.418 10 N -0.334 5.334 11 C -0.022 4.022 12 C -0.016 4.016 13 N -0.381 5.381 14 C 0.365 3.635 15 O -0.458 6.458 16 C -0.582 4.582 17 H 0.091 0.909 18 C -0.132 4.132 19 N -0.395 5.395 20 Si 0.732 3.268 21 H -0.205 1.205 22 H -0.192 1.192 23 H -0.192 1.192 24 C -0.016 4.016 25 C -0.035 4.035 26 O -0.020 6.020 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.163 0.837 31 H 0.166 0.834 32 H 0.172 0.828 33 H 0.159 0.841 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.123 0.877 41 H 0.091 0.909 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.435 19.044 6.266 20.772 hybrid contribution 0.802 -0.555 0.425 1.064 sum 6.237 18.489 6.691 20.628 Atomic orbital electron populations 1.20342 0.85480 1.04318 1.03253 1.22674 0.94253 0.84536 1.02406 1.21353 0.92830 0.99146 1.11571 1.22184 0.98099 0.93241 1.05900 1.19575 0.83030 0.93000 1.09060 1.20602 0.94569 0.91599 0.95104 1.22371 1.02128 0.97567 1.01387 1.17088 0.84817 0.82417 0.82574 1.90825 1.47371 1.46906 1.56726 1.48006 1.35190 1.05914 1.44260 1.22030 0.89694 0.99246 0.91257 1.21495 0.93570 0.88174 0.98371 1.48180 1.36486 1.06719 1.46747 1.18279 0.83042 0.79809 0.82332 1.90596 1.39175 1.81362 1.34680 1.20910 1.20399 0.89797 1.27079 0.90925 1.25729 0.94203 0.99545 0.93757 1.69992 1.24346 1.19338 1.25855 0.86440 0.80398 0.79860 0.80124 1.20537 1.19205 1.19226 1.21889 0.90239 0.98155 0.91311 1.22447 0.93793 0.88681 0.98627 1.84299 1.15708 1.33548 1.68467 0.90396 0.89836 0.89583 0.83699 0.83395 0.82770 0.84132 0.91533 0.89078 0.88693 0.93598 0.91932 0.93453 0.87654 0.90876 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.41 36.00 0.37 -0.35 16 2 C 0.01 0.19 7.30 -35.41 -0.26 -0.07 16 3 C -0.23 -2.65 10.76 -39.90 -0.43 -3.08 16 4 C -0.17 -2.02 10.90 -38.91 -0.42 -2.44 16 5 C 0.00 0.05 5.66 -38.40 -0.22 -0.17 16 6 C 0.00 0.01 9.89 -39.23 -0.39 -0.38 16 7 C -0.21 -2.57 9.10 -39.26 -0.36 -2.93 16 8 C 0.54 8.59 7.07 -15.00 -0.11 8.49 16 9 O -0.54 -10.05 12.13 -19.68 -0.24 -10.29 16 10 N -0.60 -9.69 2.95 -175.64 -0.52 -10.21 16 11 C 0.10 1.78 6.60 -3.60 -0.02 1.76 16 12 C 0.11 2.19 6.60 -3.60 -0.02 2.16 16 13 N -0.64 -14.32 2.94 -173.87 -0.51 -14.83 16 14 C 0.56 15.51 7.62 -12.99 -0.10 15.41 16 15 O -0.58 -18.31 14.45 5.20 0.08 -18.23 16 16 C -0.55 -14.70 8.87 -35.63 -0.32 -15.02 16 17 H 0.07 1.74 5.66 -52.49 -0.30 1.45 16 18 C 0.09 2.37 5.50 -17.37 -0.10 2.28 16 19 N -0.77 -22.52 11.84 55.55 0.66 -21.86 16 20 Si 0.91 19.40 29.56 -169.99 -5.02 14.37 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 24 C 0.11 1.92 6.51 -3.36 -0.02 1.90 16 25 C 0.09 1.27 6.48 -3.36 -0.02 1.25 16 26 O -0.13 -1.97 7.52 -20.12 -0.15 -2.13 16 27 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.15 1.28 8.06 -52.48 -0.42 0.86 16 31 H 0.15 1.26 8.06 -52.48 -0.42 0.83 16 32 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.14 1.26 5.92 -52.48 -0.31 0.95 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.09 1.58 6.98 -51.93 -0.36 1.22 16 36 H 0.09 2.09 6.99 -51.92 -0.36 1.73 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.11 1.86 5.33 -51.93 -0.28 1.58 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.09 0.92 5.38 -51.93 -0.28 0.64 16 LS Contribution 347.69 15.07 5.24 5.24 Total: -1.00 -37.01 347.69 -8.13 -45.14 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -5.25 Total: 3.98 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: -2.41 Total: 8.82 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: -0.37 Total: -46.90 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -0.31 Total: -30.65 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -37.01 -8.13 -45.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492916805.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.454 kcal (2) G-P(sol) polarization free energy of solvation -37.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds