Wall clock time and date at job start Tue Mar 31 2020 13:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35153 * 125.47891 * 2 1 4 4 C 1.40312 * 107.20549 * 179.72085 * 3 2 1 5 5 C 1.37952 * 106.52875 * 0.41032 * 4 3 2 6 6 C 1.41604 * 126.10755 * 179.84999 * 5 4 3 7 7 C 1.35623 * 119.99957 * 203.60233 * 6 5 4 8 8 C 1.41542 * 120.00281 * 19.73619 * 7 6 5 9 9 O 1.21772 * 120.00254 * 7.40134 * 8 7 6 10 10 N 1.34785 * 120.00205 * 187.40791 * 8 7 6 11 11 C 1.46966 * 120.59448 * 184.12019 * 10 8 7 12 12 C 1.53368 * 108.62926 * 235.20229 * 11 10 8 13 13 N 1.46962 * 108.63665 * 310.56869 * 12 11 10 14 14 C 1.34775 * 120.60019 * 235.20878 * 13 12 11 15 15 O 1.21685 * 119.99639 * 4.77595 * 14 13 12 16 16 C 1.46375 * 119.99924 * 184.78200 * 14 13 12 17 17 H 1.07999 * 120.00595 * 354.84963 * 16 14 13 18 18 C 1.40048 * 119.99500 * 174.85235 * 16 14 13 19 19 N 1.30668 * 120.00531 * 359.97438 * 18 16 14 20 20 Si 1.86807 * 119.99739 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46999 * 180.02562 * 20 18 16 22 22 H 1.48500 * 109.46988 * 299.99723 * 20 18 16 23 23 H 1.48494 * 109.47248 * 59.99713 * 20 18 16 24 24 C 1.46968 * 118.80752 * 55.48649 * 13 12 11 25 25 C 1.46963 * 120.59191 * 4.08764 * 10 8 7 26 26 O 1.34019 * 125.48576 * 179.97438 * 2 1 3 27 27 H 1.09008 * 109.46853 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47343 * 299.99798 * 1 2 3 29 29 H 1.09004 * 109.47048 * 60.00121 * 1 2 3 30 30 H 1.08007 * 126.39953 * 0.02562 * 3 2 1 31 31 H 1.08003 * 126.73817 * 180.26306 * 4 3 2 32 32 H 1.08000 * 119.99913 * 23.59511 * 6 5 4 33 33 H 1.08005 * 120.00050 * 199.73202 * 7 6 5 34 34 H 1.09000 * 109.60979 * 115.45861 * 11 10 8 35 35 H 1.09000 * 109.60637 * 354.94472 * 11 10 8 36 36 H 1.09010 * 109.60826 * 190.83215 * 12 11 10 37 37 H 1.09001 * 109.61379 * 70.32284 * 12 11 10 38 38 H 0.96996 * 120.00377 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.61363 * 64.26442 * 24 13 12 40 40 H 1.09001 * 109.61268 * 184.77648 * 24 13 12 41 41 H 1.08997 * 109.61163 * 244.54331 * 25 10 8 42 42 H 1.08998 * 109.60949 * 5.06070 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2914 1.1006 0.0000 4 6 3.6238 0.6606 0.0065 5 6 3.5818 -0.7182 0.0008 6 6 4.6999 -1.5871 0.0013 7 6 4.5766 -2.8511 -0.4745 8 6 3.5029 -3.1817 -1.3354 9 8 2.7687 -2.3064 -1.7570 10 7 3.2929 -4.4654 -1.6886 11 6 2.2389 -4.8133 -2.6519 12 6 1.3096 -5.8498 -2.0083 13 7 2.1308 -6.9266 -1.4375 14 6 1.9209 -8.2102 -1.7907 15 8 1.1049 -8.4784 -2.6526 16 6 2.6745 -9.2816 -1.1373 17 1 3.4567 -9.0399 -0.4330 18 6 2.3811 -10.6203 -1.4257 19 7 1.4344 -10.9130 -2.2775 20 14 3.3432 -11.9877 -0.5925 21 1 2.8436 -13.3037 -1.0656 22 1 4.7835 -11.8556 -0.9290 23 1 3.1678 -11.8909 0.8789 24 6 3.1811 -6.5793 -0.4700 25 6 4.1142 -5.5422 -1.1178 26 8 2.2849 -1.0913 0.0005 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.9555 2.1271 0.0004 31 1 4.5086 1.2800 0.0123 32 1 5.6509 -1.2432 0.3805 33 1 5.2979 -3.6055 -0.1966 34 1 2.6893 -5.2341 -3.5509 35 1 1.6689 -3.9204 -2.9088 36 1 0.6411 -6.2614 -2.7646 37 1 0.7256 -5.3772 -1.2185 38 1 1.2310 -11.8402 -2.4770 39 1 2.7274 -6.1574 0.4268 40 1 3.7491 -7.4726 -0.2100 41 1 4.6981 -6.0148 -1.9076 42 1 4.7826 -5.1306 -0.3616 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492916805.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:45 Heat of formation + Delta-G solvation = -34.901715 kcal Electronic energy + Delta-G solvation = -26693.912389 eV Core-core repulsion = 22834.220212 eV Total energy + Delta-G solvation = -3859.692178 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.37722 -41.30473 -39.70919 -37.55223 -35.20253 -34.82799 -34.44329 -34.03514 -32.70702 -31.81466 -29.20218 -28.32884 -27.21810 -25.01419 -24.21049 -23.02611 -22.68008 -21.58951 -20.79547 -19.64401 -18.97563 -18.06345 -17.61387 -17.39557 -16.94199 -16.47609 -16.27420 -16.17718 -15.90451 -15.68556 -15.34359 -14.99704 -14.57480 -14.26780 -14.17777 -13.84774 -13.82235 -13.70001 -13.60649 -13.44365 -13.19546 -13.10571 -12.80054 -12.69056 -12.67386 -12.33015 -12.30077 -12.01840 -11.95654 -11.11784 -10.91080 -10.81571 -10.60602 -9.99988 -9.80186 -9.02616 -8.68015 -8.28786 -6.84262 -0.48321 1.21320 1.42632 1.45901 1.57532 1.76122 2.01480 2.20937 2.26507 2.44558 2.51393 2.81597 3.58519 3.71584 3.80330 3.93877 3.95647 4.05595 4.13309 4.18824 4.30306 4.38820 4.47332 4.53067 4.62105 4.65882 4.67011 4.72721 4.80067 4.82316 4.85039 4.90609 5.06131 5.12593 5.18442 5.36463 5.40192 5.50640 5.70010 5.72026 6.10868 6.30684 6.34589 6.49353 6.87966 7.22990 7.39210 8.44846 8.67008 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025988 B = 0.002920 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.150968 B = 9585.977990 C =10106.551681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.012 4.012 3 C -0.235 4.235 4 C -0.168 4.168 5 C -0.035 4.035 6 C 0.024 3.976 7 C -0.238 4.238 8 C 0.534 3.466 9 O -0.574 6.574 10 N -0.607 5.607 11 C 0.116 3.884 12 C 0.113 3.887 13 N -0.645 5.645 14 C 0.540 3.460 15 O -0.633 6.633 16 C -0.565 4.565 17 H 0.102 0.898 18 C 0.027 3.973 19 N -0.825 5.825 20 Si 0.997 3.003 21 H -0.280 1.280 22 H -0.250 1.250 23 H -0.252 1.252 24 C 0.104 3.896 25 C 0.097 3.903 26 O -0.161 6.161 27 H 0.062 0.938 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.170 0.830 31 H 0.180 0.820 32 H 0.204 0.796 33 H 0.175 0.825 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.273 0.727 39 H 0.059 0.941 40 H 0.107 0.893 41 H 0.071 0.929 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.800 20.690 9.577 24.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.064 4.064 3 C -0.254 4.254 4 C -0.187 4.187 5 C -0.084 4.084 6 C 0.004 3.996 7 C -0.258 4.258 8 C 0.329 3.671 9 O -0.456 6.456 10 N -0.340 5.340 11 C -0.009 4.009 12 C -0.012 4.012 13 N -0.382 5.382 14 C 0.347 3.653 15 O -0.520 6.520 16 C -0.601 4.601 17 H 0.119 0.881 18 C -0.188 4.188 19 N -0.455 5.455 20 Si 0.817 3.183 21 H -0.205 1.205 22 H -0.174 1.174 23 H -0.176 1.176 24 C -0.020 4.020 25 C -0.026 4.026 26 O -0.056 6.056 27 H 0.081 0.919 28 H 0.127 0.873 29 H 0.116 0.884 30 H 0.188 0.812 31 H 0.198 0.802 32 H 0.220 0.780 33 H 0.193 0.807 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.125 0.875 41 H 0.090 0.910 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.767 20.545 8.785 24.003 hybrid contribution -0.305 -0.776 -0.324 0.895 sum 8.462 19.769 8.461 23.109 Atomic orbital electron populations 1.20467 0.83940 1.03862 1.05019 1.23384 0.95626 0.84709 1.02712 1.21767 0.92917 0.99976 1.10750 1.22665 0.99198 0.92943 1.03927 1.20313 0.83093 0.94521 1.10488 1.21269 0.95303 0.90447 0.92549 1.22410 1.01731 0.99163 1.02528 1.17779 0.85200 0.81544 0.82589 1.90810 1.48959 1.47731 1.58107 1.48066 1.34951 1.06812 1.44126 1.21669 0.89912 0.98009 0.91288 1.21450 0.93768 0.88177 0.97767 1.48056 1.37445 1.05610 1.47104 1.18761 0.82709 0.81824 0.81999 1.90546 1.41459 1.82942 1.37074 1.21475 1.21021 0.90184 1.27462 0.88056 1.27042 0.94962 1.02773 0.93987 1.70192 1.26832 1.20255 1.28176 0.85071 0.78951 0.75146 0.79172 1.20531 1.17350 1.17576 1.22150 0.89588 0.99373 0.90881 1.22493 0.93075 0.87468 0.99547 1.84271 1.17023 1.35025 1.69297 0.91928 0.87340 0.88435 0.81226 0.80247 0.77969 0.80749 0.92356 0.89217 0.91679 0.93186 0.91667 0.92317 0.87509 0.91034 0.84816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.42 10.41 71.23 0.74 -0.68 16 2 C -0.01 -0.30 7.30 24.97 0.18 -0.11 16 3 C -0.24 -4.96 10.76 22.06 0.24 -4.72 16 4 C -0.17 -3.42 10.90 22.71 0.25 -3.17 16 5 C -0.03 -0.86 5.66 23.03 0.13 -0.73 16 6 C 0.02 0.42 9.89 22.49 0.22 0.65 16 7 C -0.24 -4.95 9.10 22.48 0.20 -4.75 16 8 C 0.53 16.39 7.07 85.05 0.60 16.99 16 9 O -0.57 -21.49 12.13 19.14 0.23 -21.26 16 10 N -0.61 -19.07 2.95 -827.79 -2.44 -21.51 16 11 C 0.12 4.22 6.60 86.41 0.57 4.79 16 12 C 0.11 4.80 6.60 86.41 0.57 5.37 16 13 N -0.65 -29.49 2.94 -822.22 -2.42 -31.91 16 14 C 0.54 31.14 7.62 86.36 0.66 31.80 16 15 O -0.63 -42.72 14.45 -4.30 -0.06 -42.78 16 16 C -0.57 -30.71 8.87 24.83 0.22 -30.49 16 17 H 0.10 4.72 5.66 -2.91 -0.02 4.70 16 18 C 0.03 1.49 5.50 85.31 0.47 1.95 16 19 N -0.83 -50.20 11.84 21.84 0.26 -49.95 16 20 Si 1.00 39.37 29.56 68.60 2.03 41.40 16 21 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 22 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 23 H -0.25 -9.25 7.11 99.48 0.71 -8.54 16 24 C 0.10 3.52 6.51 86.57 0.56 4.08 16 25 C 0.10 2.57 6.48 86.57 0.56 3.13 16 26 O -0.16 -4.97 7.52 17.56 0.13 -4.84 16 27 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.17 2.54 8.06 -2.91 -0.02 2.51 16 31 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 32 H 0.20 1.47 8.06 -2.91 -0.02 1.45 16 33 H 0.18 2.24 5.92 -2.91 -0.02 2.23 16 34 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.09 3.28 6.98 -2.39 -0.02 3.26 16 36 H 0.06 3.13 6.99 -2.38 -0.02 3.11 16 37 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.27 15.16 8.29 -92.71 -0.77 14.39 16 39 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.11 3.57 5.33 -2.39 -0.01 3.56 16 41 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.13 2.26 5.38 -2.39 -0.01 2.25 16 Total: -1.00 -86.96 347.69 4.96 -82.00 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 1.05 Total: 24.75 kcal Atomic # 6 Polarization: 17.93 SS G_CDS: 6.18 Total: 24.11 kcal Atomic # 7 Polarization: -98.77 SS G_CDS: -4.60 Total: -103.37 kcal Atomic # 8 Polarization: -69.18 SS G_CDS: 0.30 Total: -68.88 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Total: -86.96 4.96 -82.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492916805.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.093 kcal (2) G-P(sol) polarization free energy of solvation -86.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds