Wall clock time and date at job start Tue Mar 31 2020 12:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00001 * 2 1 4 4 H 1.48500 * 109.47213 * 270.00100 * 3 2 1 5 5 H 1.48507 * 109.46817 * 30.00057 * 3 2 1 6 6 H 1.48496 * 109.46997 * 149.99546 * 3 2 1 7 7 C 1.37874 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99601 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00185 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47392 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46912 * 180.02562 * 10 9 7 12 12 O 1.45210 * 109.46679 * 179.97438 * 11 10 9 13 13 C 1.34224 * 116.99646 * 180.02562 * 12 11 10 14 14 O 1.20825 * 120.00329 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99549 * 180.02562 * 13 12 11 16 16 N 1.46506 * 109.46820 * 179.97438 * 15 13 12 17 17 C 1.34782 * 120.00112 * 180.02562 * 16 15 13 18 18 O 1.21699 * 119.99457 * 359.97438 * 17 16 15 19 19 C 1.46420 * 120.00244 * 180.27434 * 17 16 15 20 20 C 1.34802 * 120.00033 * 172.94941 * 19 17 16 21 21 C 1.47210 * 120.00101 * 349.11094 * 20 19 17 22 22 C 1.40270 * 120.58753 * 136.52985 * 21 20 19 23 23 C 1.38288 * 118.26720 * 179.97438 * 22 21 20 24 24 C 1.38395 * 119.33502 * 0.02562 * 23 22 21 25 25 N 1.31940 * 121.13880 * 359.97438 * 24 23 22 26 26 C 1.31668 * 121.90186 * 359.73639 * 25 24 23 27 27 H 0.97003 * 120.00282 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47335 * 59.99806 * 9 7 2 29 29 H 1.09008 * 109.47279 * 300.00087 * 9 7 2 30 30 H 1.08996 * 109.47044 * 59.99843 * 10 9 7 31 31 H 1.09001 * 109.46437 * 299.99812 * 10 9 7 32 32 H 1.08996 * 109.47404 * 60.00052 * 11 10 9 33 33 H 1.08995 * 109.47777 * 299.99457 * 11 10 9 34 34 H 1.08994 * 109.47370 * 59.99796 * 15 13 12 35 35 H 1.09000 * 109.47511 * 299.99131 * 15 13 12 36 36 H 0.96995 * 120.00175 * 359.97438 * 16 15 13 37 37 H 1.07997 * 119.99875 * 352.95127 * 19 17 16 38 38 H 1.08000 * 120.00020 * 169.11483 * 20 19 17 39 39 H 1.08001 * 120.85934 * 359.96274 * 22 21 20 40 40 H 1.07999 * 120.32673 * 180.02562 * 23 22 21 41 41 H 1.07996 * 119.42800 * 179.97438 * 24 23 22 42 42 H 1.08006 * 119.73463 * 180.28510 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4802 -4.9870 0.0012 12 8 2.4239 -6.0907 0.0018 13 6 1.9108 -7.3310 0.0008 14 8 0.7130 -7.4894 -0.0001 15 6 2.8288 -8.5261 0.0019 16 7 2.0309 -9.7548 0.0011 17 6 2.6428 -10.9558 0.0025 18 8 3.8581 -11.0194 0.0038 19 6 1.8453 -12.1837 -0.0044 20 6 2.4508 -13.3798 -0.1464 21 6 3.8698 -13.4452 -0.5325 22 6 4.7433 -14.3367 0.1077 23 6 6.0666 -14.3587 -0.2933 24 6 6.4832 -13.5087 -1.3030 25 7 5.6400 -12.6798 -1.8883 26 6 4.3695 -12.6239 -1.5474 27 1 -0.4851 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 2.8712 -3.6039 0.8922 31 1 2.8725 -3.6047 -0.8878 32 1 0.8546 -5.0449 -0.8894 33 1 0.8526 -5.0447 0.8904 34 1 3.4564 -8.5014 0.8928 35 1 3.4589 -8.5012 -0.8872 36 1 1.0623 -9.7041 0.0004 37 1 0.7721 -12.1313 0.1043 38 1 1.8947 -14.2900 0.0230 39 1 4.3915 -14.9888 0.8935 40 1 6.7677 -15.0323 0.1767 41 1 7.5164 -13.5244 -1.6171 42 1 3.7089 -11.9351 -2.0532 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493017161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:33 Heat of formation + Delta-G solvation = -70.901622 kcal Electronic energy + Delta-G solvation = -24443.694482 eV Core-core repulsion = 20582.441231 eV Total energy + Delta-G solvation = -3861.253251 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.92202 -40.42063 -39.45346 -36.84485 -35.12763 -34.45143 -34.05973 -32.41903 -31.79703 -30.58098 -28.82534 -26.92186 -24.74269 -23.72308 -23.36675 -22.30701 -20.99838 -20.44585 -20.13178 -18.20363 -17.47708 -17.16289 -16.90128 -16.79286 -16.34228 -16.22115 -15.72776 -15.39802 -14.80905 -14.60269 -14.49232 -14.23055 -13.92855 -13.78020 -13.36781 -13.20689 -13.02489 -12.93311 -12.22846 -12.16146 -12.07125 -11.93323 -11.00872 -10.80266 -10.76059 -10.70780 -10.54207 -10.50710 -10.45710 -10.00171 -9.79404 -9.59931 -9.55848 -9.45549 -9.20268 -8.64673 -8.41650 -6.06450 -4.09615 0.19792 1.08958 1.37741 2.05717 2.29182 2.87378 3.11293 3.29600 3.35868 3.39482 3.64277 4.11044 4.32062 4.37979 4.40832 4.55476 4.62650 4.64034 4.77661 4.95958 4.98395 5.08036 5.21949 5.29663 5.43134 5.48333 5.50186 5.57404 5.66272 5.84239 5.85052 5.92684 5.94647 6.34369 6.44290 6.47446 6.72125 6.92146 7.08241 7.55843 7.64119 7.66237 7.78924 7.81821 7.91499 8.32281 8.96531 9.54966 11.04913 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.030187 B = 0.001710 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.330688 B =16369.319011 C =17090.645470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.110 4.110 11 C 0.069 3.931 12 O -0.351 6.351 13 C 0.456 3.544 14 O -0.511 6.511 15 C 0.126 3.874 16 N -0.715 5.715 17 C 0.543 3.457 18 O -0.530 6.530 19 C -0.206 4.206 20 C -0.016 4.016 21 C -0.127 4.127 22 C -0.058 4.058 23 C -0.187 4.187 24 C 0.106 3.894 25 N -0.492 5.492 26 C 0.181 3.819 27 H 0.262 0.738 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.413 0.587 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.152 0.848 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.982 -32.452 0.070 32.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.148 4.148 11 C -0.004 4.004 12 O -0.266 6.266 13 C 0.298 3.702 14 O -0.400 6.400 15 C 0.001 3.999 16 N -0.370 5.370 17 C 0.332 3.668 18 O -0.408 6.408 19 C -0.227 4.227 20 C -0.036 4.036 21 C -0.129 4.129 22 C -0.084 4.084 23 C -0.207 4.207 24 C -0.049 4.049 25 N -0.201 5.201 26 C 0.022 3.978 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.251 0.749 37 H 0.158 0.842 38 H 0.159 0.841 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.169 0.831 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.649 -31.766 -0.579 32.460 hybrid contribution -0.658 0.605 0.851 1.235 sum 5.991 -31.161 0.273 31.732 Atomic orbital electron populations 1.69961 1.06090 1.26802 1.50476 1.25029 0.94891 0.99398 0.95144 0.86535 0.79807 0.83162 0.78160 1.20592 1.21181 1.19799 1.21165 0.93157 0.90640 1.51106 0.92381 1.19057 0.93818 0.90728 0.97706 1.21792 1.00007 0.90801 1.02171 1.23606 0.91116 0.83290 1.02370 1.86493 1.42742 1.14757 1.82617 1.23335 0.88336 0.85661 0.72860 1.90656 1.16799 1.86680 1.45914 1.20639 0.92447 0.80306 1.06531 1.45748 1.11511 1.04477 1.75291 1.18457 0.88006 0.83659 0.76655 1.90907 1.13633 1.86848 1.49409 1.22949 1.00518 0.91865 1.07378 1.22289 0.92442 0.97532 0.91363 1.19900 0.94412 0.99098 0.99529 1.21598 0.93272 0.95989 0.97540 1.21955 0.96626 1.02150 0.99958 1.22811 0.99274 0.90759 0.92059 1.67629 1.03594 1.20346 1.28517 1.22719 0.91535 0.91745 0.91825 0.92873 0.96199 0.96211 0.91999 0.91984 0.91240 0.91260 0.86970 0.86828 0.74865 0.84183 0.84072 0.85004 0.84950 0.83064 0.83816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.23 5.53 -26.73 -0.15 -2.37 16 11 C 0.07 1.21 5.47 37.16 0.20 1.41 16 12 O -0.35 -5.45 10.22 -39.24 -0.40 -5.85 16 13 C 0.46 6.12 8.03 36.01 0.29 6.41 16 14 O -0.51 -7.86 15.42 -18.75 -0.29 -8.15 16 15 C 0.13 1.29 6.27 -5.19 -0.03 1.25 16 16 N -0.71 -6.56 5.52 -62.88 -0.35 -6.91 16 17 C 0.54 5.15 6.80 -12.96 -0.09 5.06 16 18 O -0.53 -6.64 12.13 5.19 0.06 -6.57 16 19 C -0.21 -1.30 9.92 -37.51 -0.37 -1.67 16 20 C -0.02 -0.09 9.84 -37.16 -0.37 -0.46 16 21 C -0.13 -1.09 4.55 -104.91 -0.48 -1.57 16 22 C -0.06 -0.43 9.95 -38.80 -0.39 -0.82 16 23 C -0.19 -1.39 10.09 -39.51 -0.40 -1.79 16 24 C 0.11 0.97 11.17 -17.45 -0.19 0.78 16 25 N -0.49 -5.77 10.34 -12.83 -0.13 -5.91 16 26 C 0.18 1.93 7.78 -17.04 -0.13 1.80 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.07 1.22 8.13 -51.93 -0.42 0.79 16 33 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 34 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.41 3.46 7.42 -40.82 -0.30 3.16 16 37 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 38 H 0.14 0.38 8.06 -52.49 -0.42 -0.05 16 39 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.14 1.49 7.02 -52.48 -0.37 1.12 16 LS Contribution 368.62 15.07 5.56 5.56 Total: -1.00 -34.39 368.62 -8.20 -42.58 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -5.71 Total: -0.45 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -2.65 Total: -4.90 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.26 Total: -38.66 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.63 Total: -20.57 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.39 -8.20 -42.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493017161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.317 kcal (2) G-P(sol) polarization free energy of solvation -34.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds