Wall clock time and date at job start Tue Mar 31 2020 12:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00001 * 2 1 4 4 H 1.48500 * 109.47213 * 270.00100 * 3 2 1 5 5 H 1.48507 * 109.46817 * 30.00057 * 3 2 1 6 6 H 1.48496 * 109.46997 * 149.99546 * 3 2 1 7 7 C 1.37874 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99601 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00185 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47392 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46912 * 180.02562 * 10 9 7 12 12 O 1.45210 * 109.46679 * 179.97438 * 11 10 9 13 13 C 1.34224 * 116.99646 * 180.02562 * 12 11 10 14 14 O 1.20825 * 120.00329 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99549 * 180.02562 * 13 12 11 16 16 N 1.46506 * 109.46820 * 179.97438 * 15 13 12 17 17 C 1.34782 * 120.00112 * 180.02562 * 16 15 13 18 18 O 1.21699 * 119.99457 * 359.97438 * 17 16 15 19 19 C 1.46420 * 120.00244 * 180.27434 * 17 16 15 20 20 C 1.34802 * 120.00033 * 172.94941 * 19 17 16 21 21 C 1.47210 * 120.00101 * 349.11094 * 20 19 17 22 22 C 1.40270 * 120.58753 * 136.52985 * 21 20 19 23 23 C 1.38288 * 118.26720 * 179.97438 * 22 21 20 24 24 C 1.38395 * 119.33502 * 0.02562 * 23 22 21 25 25 N 1.31940 * 121.13880 * 359.97438 * 24 23 22 26 26 C 1.31668 * 121.90186 * 359.73639 * 25 24 23 27 27 H 0.97003 * 120.00282 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47335 * 59.99806 * 9 7 2 29 29 H 1.09008 * 109.47279 * 300.00087 * 9 7 2 30 30 H 1.08996 * 109.47044 * 59.99843 * 10 9 7 31 31 H 1.09001 * 109.46437 * 299.99812 * 10 9 7 32 32 H 1.08996 * 109.47404 * 60.00052 * 11 10 9 33 33 H 1.08995 * 109.47777 * 299.99457 * 11 10 9 34 34 H 1.08994 * 109.47370 * 59.99796 * 15 13 12 35 35 H 1.09000 * 109.47511 * 299.99131 * 15 13 12 36 36 H 0.96995 * 120.00175 * 359.97438 * 16 15 13 37 37 H 1.07997 * 119.99875 * 352.95127 * 19 17 16 38 38 H 1.08000 * 120.00020 * 169.11483 * 20 19 17 39 39 H 1.08001 * 120.85934 * 359.96274 * 22 21 20 40 40 H 1.07999 * 120.32673 * 180.02562 * 23 22 21 41 41 H 1.07996 * 119.42800 * 179.97438 * 24 23 22 42 42 H 1.08006 * 119.73463 * 180.28510 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4802 -4.9870 0.0012 12 8 2.4239 -6.0907 0.0018 13 6 1.9108 -7.3310 0.0008 14 8 0.7130 -7.4894 -0.0001 15 6 2.8288 -8.5261 0.0019 16 7 2.0309 -9.7548 0.0011 17 6 2.6428 -10.9558 0.0025 18 8 3.8581 -11.0194 0.0038 19 6 1.8453 -12.1837 -0.0044 20 6 2.4508 -13.3798 -0.1464 21 6 3.8698 -13.4452 -0.5325 22 6 4.7433 -14.3367 0.1077 23 6 6.0666 -14.3587 -0.2933 24 6 6.4832 -13.5087 -1.3030 25 7 5.6400 -12.6798 -1.8883 26 6 4.3695 -12.6239 -1.5474 27 1 -0.4851 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 2.8712 -3.6039 0.8922 31 1 2.8725 -3.6047 -0.8878 32 1 0.8546 -5.0449 -0.8894 33 1 0.8526 -5.0447 0.8904 34 1 3.4564 -8.5014 0.8928 35 1 3.4589 -8.5012 -0.8872 36 1 1.0623 -9.7041 0.0004 37 1 0.7721 -12.1313 0.1043 38 1 1.8947 -14.2900 0.0230 39 1 4.3915 -14.9888 0.8935 40 1 6.7677 -15.0323 0.1767 41 1 7.5164 -13.5244 -1.6171 42 1 3.7089 -11.9351 -2.0532 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493017161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:32 Heat of formation + Delta-G solvation = -93.016271 kcal Electronic energy + Delta-G solvation = -24444.653445 eV Core-core repulsion = 20582.441231 eV Total energy + Delta-G solvation = -3862.212214 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.86405 -41.28464 -40.20452 -38.08841 -35.97068 -35.88509 -35.11214 -33.72144 -33.01829 -31.26137 -29.85464 -28.57571 -25.60381 -24.96480 -24.32341 -23.09301 -22.20435 -22.00167 -20.90299 -19.00629 -18.68782 -18.22703 -18.01395 -17.82183 -17.63239 -16.98298 -16.62594 -16.48219 -16.35794 -15.67383 -15.53614 -15.13392 -14.68699 -14.46469 -14.35915 -14.21148 -14.02837 -13.91273 -13.72536 -13.67146 -13.50644 -12.84356 -12.62128 -12.53657 -12.41455 -12.12725 -11.94547 -11.48694 -11.45094 -11.37045 -11.25161 -11.11987 -10.63282 -10.57930 -10.28854 -10.14438 -9.25423 -8.22749 -6.33985 -0.35553 0.48571 0.80256 0.94227 1.25081 1.41507 1.42263 1.53695 2.23656 2.27912 2.40957 3.00485 3.11279 3.38754 3.57088 3.77510 3.87571 3.97701 4.01320 4.05702 4.07387 4.16263 4.25264 4.31210 4.39086 4.55976 4.68542 4.78327 4.79571 4.89346 5.03766 5.05748 5.11504 5.17956 5.33173 5.33861 5.40982 5.48838 5.62936 5.79387 5.86446 6.18224 6.38679 6.48921 6.81763 7.10616 7.14254 7.35538 8.89213 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.030187 B = 0.001710 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.330688 B =16369.319011 C =17090.645470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.026 3.974 10 C -0.097 4.097 11 C 0.079 3.921 12 O -0.353 6.353 13 C 0.460 3.540 14 O -0.529 6.529 15 C 0.135 3.865 16 N -0.712 5.712 17 C 0.539 3.461 18 O -0.564 6.564 19 C -0.212 4.212 20 C -0.006 4.006 21 C -0.135 4.135 22 C -0.064 4.064 23 C -0.184 4.184 24 C 0.083 3.917 25 N -0.530 5.530 26 C 0.156 3.844 27 H 0.264 0.736 28 H -0.002 1.002 29 H -0.001 1.001 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.418 0.582 37 H 0.171 0.829 38 H 0.182 0.818 39 H 0.164 0.836 40 H 0.162 0.838 41 H 0.168 0.832 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.590 -34.160 0.935 34.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.082 0.918 9 C -0.012 4.012 10 C -0.134 4.134 11 C 0.006 3.994 12 O -0.269 6.269 13 C 0.304 3.696 14 O -0.419 6.419 15 C 0.010 3.990 16 N -0.368 5.368 17 C 0.330 3.670 18 O -0.444 6.444 19 C -0.232 4.232 20 C -0.026 4.026 21 C -0.137 4.137 22 C -0.089 4.089 23 C -0.203 4.203 24 C -0.072 4.072 25 N -0.240 5.240 26 C -0.002 4.002 27 H 0.073 0.927 28 H 0.017 0.983 29 H 0.017 0.983 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.257 0.743 37 H 0.189 0.811 38 H 0.199 0.801 39 H 0.182 0.818 40 H 0.180 0.820 41 H 0.185 0.815 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.252 -33.495 0.284 34.273 hybrid contribution -0.829 1.044 0.580 1.453 sum 6.423 -32.451 0.864 33.092 Atomic orbital electron populations 1.70089 1.07786 1.27910 1.51400 1.25984 0.95801 1.03435 0.94613 0.85406 0.78639 0.78252 0.78503 1.19778 1.20768 1.18689 1.21627 0.93740 0.91957 1.50914 0.91785 1.18939 0.94261 0.92358 0.95610 1.21481 0.98819 0.90507 1.02613 1.23210 0.90761 0.83151 1.02300 1.86468 1.42146 1.15211 1.83061 1.23870 0.88538 0.85422 0.71773 1.90652 1.17803 1.86721 1.46734 1.20615 0.91809 0.79288 1.07257 1.45768 1.11657 1.04117 1.75263 1.19051 0.87890 0.84402 0.75672 1.90906 1.15227 1.87287 1.51005 1.23099 1.01653 0.90321 1.08115 1.22657 0.91156 0.98892 0.89918 1.20195 0.96153 0.98572 0.98828 1.22052 0.93115 0.95887 0.97834 1.22316 0.97428 1.01627 0.98961 1.23201 0.99856 0.91165 0.92963 1.67534 1.04531 1.21878 1.30087 1.22704 0.91428 0.92782 0.93276 0.92680 0.98323 0.98297 0.91478 0.91503 0.91403 0.91359 0.86075 0.86132 0.74285 0.81131 0.80127 0.81837 0.82037 0.81532 0.84914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.21 13.29 21.45 0.28 -55.92 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.97 43.89 29.54 68.60 2.03 45.92 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.54 -30.62 9.11 25.60 0.23 -30.39 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 9 C 0.03 1.32 4.97 29.85 0.15 1.47 16 10 C -0.10 -3.91 5.53 30.59 0.17 -3.74 16 11 C 0.08 2.77 5.47 71.98 0.39 3.16 16 12 O -0.35 -10.73 10.22 -51.36 -0.52 -11.26 16 13 C 0.46 12.03 8.03 71.24 0.57 12.61 16 14 O -0.53 -15.95 15.42 21.97 0.34 -15.61 16 15 C 0.14 2.66 6.27 85.63 0.54 3.20 16 16 N -0.71 -12.38 5.52 -471.07 -2.60 -14.99 16 17 C 0.54 9.70 6.80 86.37 0.59 10.29 16 18 O -0.56 -14.03 12.13 -4.35 -0.05 -14.08 16 19 C -0.21 -2.19 9.92 23.61 0.23 -1.96 16 20 C -0.01 -0.06 9.84 23.84 0.23 0.18 16 21 C -0.14 -2.14 4.55 -20.05 -0.09 -2.23 16 22 C -0.06 -0.80 9.95 22.78 0.23 -0.57 16 23 C -0.18 -2.42 10.09 22.32 0.23 -2.19 16 24 C 0.08 1.50 11.17 84.71 0.95 2.45 16 25 N -0.53 -12.89 10.34 -194.51 -2.01 -14.90 16 26 C 0.16 3.41 7.78 85.09 0.66 4.08 16 27 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 28 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 29 H 0.00 -0.08 8.14 -2.38 -0.02 -0.09 16 30 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.07 2.39 8.13 -2.39 -0.02 2.37 16 33 H 0.07 2.40 8.13 -2.39 -0.02 2.38 16 34 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.42 6.49 7.42 -92.71 -0.69 5.80 16 37 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 38 H 0.18 0.16 8.06 -2.91 -0.02 0.14 16 39 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 40 H 0.16 1.06 8.06 -2.91 -0.02 1.03 16 41 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 42 H 0.13 2.94 7.02 -2.91 -0.02 2.92 16 Total: -1.00 -75.74 368.62 3.35 -72.39 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.35 Total: 11.66 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: 5.54 Total: -3.20 kcal Atomic # 7 Polarization: -81.48 SS G_CDS: -4.33 Total: -85.81 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -0.24 Total: -40.95 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -75.74 3.35 -72.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493017161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.626 kcal (2) G-P(sol) polarization free energy of solvation -75.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds