Wall clock time and date at job start Tue Mar 31 2020 12:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 119.99768 * 2 1 4 4 H 1.48500 * 109.47013 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47227 * 299.99652 * 3 2 1 6 6 H 1.48494 * 109.47248 * 60.00187 * 3 2 1 7 7 C 1.37875 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00342 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00386 * 359.97438 * 7 2 1 10 10 C 1.52991 * 109.47336 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46980 * 179.97438 * 10 9 7 12 12 O 1.45200 * 109.47046 * 179.97438 * 11 10 9 13 13 C 1.34224 * 117.00311 * 180.02562 * 12 11 10 14 14 O 1.20828 * 119.99946 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00339 * 179.97438 * 13 12 11 16 16 N 1.46505 * 109.47131 * 179.97438 * 15 13 12 17 17 C 1.34777 * 119.99724 * 180.02562 * 16 15 13 18 18 O 1.21693 * 120.00201 * 359.97438 * 17 16 15 19 19 C 1.46425 * 119.99668 * 179.97438 * 17 16 15 20 20 C 1.34808 * 119.99920 * 179.97438 * 19 17 16 21 21 C 1.47207 * 120.00030 * 179.72181 * 20 19 17 22 22 C 1.40274 * 120.58671 * 180.27503 * 21 20 19 23 23 C 1.38285 * 118.26464 * 179.97438 * 22 21 20 24 24 C 1.38390 * 119.33667 * 0.02562 * 23 22 21 25 25 N 1.31936 * 121.14240 * 0.02562 * 24 23 22 26 26 C 1.31666 * 121.90014 * 359.67580 * 25 24 23 27 27 H 0.96993 * 120.00397 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.47000 * 59.99826 * 9 7 2 29 29 H 1.09005 * 109.47036 * 300.00122 * 9 7 2 30 30 H 1.09003 * 109.47261 * 60.00120 * 10 9 7 31 31 H 1.08996 * 109.47544 * 299.99880 * 10 9 7 32 32 H 1.09003 * 109.46823 * 60.00100 * 11 10 9 33 33 H 1.08991 * 109.47414 * 299.99759 * 11 10 9 34 34 H 1.09003 * 109.47039 * 60.00333 * 15 13 12 35 35 H 1.08993 * 109.47358 * 300.00015 * 15 13 12 36 36 H 0.97000 * 119.99792 * 359.97438 * 16 15 13 37 37 H 1.08001 * 120.00362 * 0.02562 * 19 17 16 38 38 H 1.08002 * 120.00248 * 0.02562 * 20 19 17 39 39 H 1.07993 * 120.86536 * 359.96328 * 22 21 20 40 40 H 1.08004 * 120.32758 * 180.02562 * 23 22 21 41 41 H 1.08006 * 119.42923 * 179.97438 * 24 23 22 42 42 H 1.08003 * 119.73852 * 180.29384 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 8 2.4238 -6.0907 -0.0005 13 6 1.9109 -7.3311 -0.0006 14 8 0.7130 -7.4895 0.0003 15 6 2.8289 -8.5262 -0.0018 16 7 2.0309 -9.7549 -0.0010 17 6 2.6429 -10.9557 -0.0013 18 8 3.8581 -11.0194 -0.0028 19 6 1.8454 -12.1838 0.0000 20 6 2.4574 -13.3849 -0.0009 21 6 1.6557 -14.6195 0.0067 22 6 2.2797 -15.8758 0.0117 23 6 1.4802 -17.0041 0.0192 24 6 0.1039 -16.8598 0.0211 25 7 -0.4570 -15.6656 0.0152 26 6 0.2589 -14.5606 0.0137 27 1 -0.4850 0.8399 -0.0004 28 1 0.6241 -2.5568 -0.8902 29 1 0.6248 -2.5572 0.8897 30 1 2.8720 -3.6043 0.8895 31 1 2.8720 -3.6044 -0.8905 32 1 0.8533 -5.0451 -0.8897 33 1 0.8540 -5.0446 0.8903 34 1 3.4584 -8.5017 0.8878 35 1 3.4570 -8.5010 -0.8922 36 1 1.0623 -9.7041 0.0005 37 1 0.7668 -12.1273 0.0008 38 1 3.5359 -13.4415 -0.0021 39 1 3.3564 -15.9596 0.0095 40 1 1.9256 -17.9880 0.0237 41 1 -0.5220 -17.7400 0.0265 42 1 -0.2368 -13.6011 0.0137 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493017162.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:38 Heat of formation + Delta-G solvation = -83.761760 kcal Electronic energy + Delta-G solvation = -23610.107806 eV Core-core repulsion = 19748.296898 eV Total energy + Delta-G solvation = -3861.810908 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.80605 -40.59227 -39.70353 -36.83741 -35.18853 -34.73053 -34.06207 -32.87480 -31.79815 -30.70355 -28.87646 -26.93682 -25.09575 -24.14616 -23.36821 -22.06676 -20.99931 -20.44828 -20.15939 -18.42596 -17.73095 -17.39147 -16.82409 -16.65282 -16.58688 -16.24296 -15.49334 -15.48858 -15.34433 -14.53337 -14.49846 -14.45139 -14.27227 -14.06489 -13.65898 -13.11874 -13.03955 -12.65787 -12.32933 -12.23466 -12.16746 -11.93392 -11.35852 -11.02594 -10.79522 -10.71322 -10.52817 -10.51714 -10.46680 -10.25808 -10.02192 -9.80003 -9.60366 -9.56593 -9.18963 -8.99796 -8.42239 -6.06831 -4.09991 -0.15919 0.66430 1.39350 2.05564 2.26785 2.85319 3.07558 3.28286 3.33498 3.35954 3.40219 3.80000 4.06771 4.20213 4.26995 4.38383 4.40277 4.57405 4.59209 4.71529 4.90695 4.97401 5.08271 5.16146 5.29429 5.34669 5.46050 5.48276 5.50120 5.69981 5.79967 5.86526 5.92620 6.07180 6.34072 6.47105 6.71922 6.91848 7.06812 7.37184 7.55837 7.63641 7.66023 7.78910 7.91273 8.31945 8.96457 9.54746 11.04623 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.046664 B = 0.001422 C = 0.001382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.894683 B =19687.917705 C =20256.745362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.023 3.977 10 C -0.110 4.110 11 C 0.069 3.931 12 O -0.351 6.351 13 C 0.455 3.545 14 O -0.511 6.511 15 C 0.126 3.874 16 N -0.716 5.716 17 C 0.553 3.447 18 O -0.542 6.542 19 C -0.201 4.201 20 C -0.018 4.018 21 C -0.126 4.126 22 C -0.053 4.053 23 C -0.174 4.174 24 C 0.106 3.894 25 N -0.484 5.484 26 C 0.118 3.882 27 H 0.261 0.739 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.414 0.586 37 H 0.134 0.866 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.158 0.842 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.551 -34.567 0.032 34.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.014 4.014 10 C -0.147 4.147 11 C -0.004 4.004 12 O -0.266 6.266 13 C 0.298 3.702 14 O -0.400 6.400 15 C 0.001 3.999 16 N -0.372 5.372 17 C 0.342 3.658 18 O -0.420 6.420 19 C -0.221 4.221 20 C -0.038 4.038 21 C -0.128 4.128 22 C -0.079 4.079 23 C -0.194 4.194 24 C -0.050 4.050 25 N -0.192 5.192 26 C -0.040 4.040 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.252 0.748 37 H 0.151 0.849 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.158 0.842 41 H 0.176 0.824 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.975 -34.386 0.029 34.514 hybrid contribution 0.618 1.007 0.000 1.182 sum 3.593 -33.378 0.029 33.571 Atomic orbital electron populations 1.69972 1.06096 1.26703 1.50568 1.25027 0.94875 0.99393 0.95135 0.86486 0.80110 0.83512 0.77618 1.19638 1.20964 1.20961 1.21207 0.93191 0.90633 1.50992 0.92327 1.19062 0.93832 0.90748 0.97725 1.21790 1.00000 0.90799 1.02161 1.23608 0.91121 0.83276 1.02393 1.86486 1.42742 1.14739 1.82636 1.23326 0.88343 0.85654 0.72902 1.90661 1.16798 1.86668 1.45849 1.20647 0.92453 0.80249 1.06575 1.45645 1.11563 1.04426 1.75560 1.18195 0.87715 0.83491 0.76419 1.90847 1.13775 1.87491 1.49934 1.22866 1.00544 0.92039 1.06665 1.22227 1.00214 0.89983 0.91364 1.20046 0.94853 0.93911 1.03998 1.21867 1.00927 0.91324 0.93750 1.22152 0.95189 0.99904 1.02126 1.22980 0.92949 0.95470 0.93637 1.67696 1.40891 0.98699 1.11952 1.23214 0.89960 0.97469 0.93321 0.92922 0.96186 0.96200 0.91999 0.91991 0.91244 0.91235 0.86834 0.86823 0.74762 0.84876 0.84135 0.84096 0.84242 0.82426 0.82129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 10 C -0.11 -2.20 5.53 -26.73 -0.15 -2.35 16 11 C 0.07 1.19 5.47 37.16 0.20 1.40 16 12 O -0.35 -5.35 10.22 -39.24 -0.40 -5.75 16 13 C 0.46 6.03 8.03 36.00 0.29 6.32 16 14 O -0.51 -7.82 15.42 -18.75 -0.29 -8.11 16 15 C 0.13 1.26 6.27 -5.19 -0.03 1.22 16 16 N -0.72 -6.67 5.52 -62.88 -0.35 -7.01 16 17 C 0.55 5.39 7.74 -12.96 -0.10 5.29 16 18 O -0.54 -6.96 16.23 5.20 0.08 -6.88 16 19 C -0.20 -1.39 9.42 -37.50 -0.35 -1.74 16 20 C -0.02 -0.11 9.48 -37.16 -0.35 -0.47 16 21 C -0.13 -0.78 5.88 -104.91 -0.62 -1.40 16 22 C -0.05 -0.26 9.95 -38.80 -0.39 -0.65 16 23 C -0.17 -0.75 10.09 -39.51 -0.40 -1.15 16 24 C 0.11 0.60 11.17 -17.45 -0.19 0.40 16 25 N -0.48 -3.86 10.34 -12.83 -0.13 -3.99 16 26 C 0.12 0.81 10.59 -17.04 -0.18 0.63 16 27 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.07 1.21 8.13 -51.93 -0.42 0.78 16 33 H 0.07 1.21 8.13 -51.93 -0.42 0.78 16 34 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.41 3.51 7.42 -40.82 -0.30 3.21 16 37 H 0.13 0.61 6.10 -52.49 -0.32 0.29 16 38 H 0.14 0.93 7.52 -52.49 -0.39 0.53 16 39 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 40 H 0.14 0.24 8.06 -52.48 -0.42 -0.19 16 41 H 0.16 0.48 8.06 -52.48 -0.42 0.06 16 42 H 0.16 0.81 6.19 -52.48 -0.32 0.49 16 LS Contribution 373.62 15.07 5.63 5.63 Total: -1.00 -34.29 373.62 -8.10 -42.38 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.53 Total: -1.47 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -2.82 Total: -5.35 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.26 Total: -36.80 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.61 Total: -20.74 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.29 -8.10 -42.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493017162.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.379 kcal (2) G-P(sol) polarization free energy of solvation -34.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds