Wall clock time and date at job start Tue Mar 31 2020 12:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 119.99768 * 2 1 4 4 H 1.48500 * 109.47013 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47227 * 299.99652 * 3 2 1 6 6 H 1.48494 * 109.47248 * 60.00187 * 3 2 1 7 7 C 1.37875 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00342 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00386 * 359.97438 * 7 2 1 10 10 C 1.52991 * 109.47336 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46980 * 179.97438 * 10 9 7 12 12 O 1.45200 * 109.47046 * 179.97438 * 11 10 9 13 13 C 1.34224 * 117.00311 * 180.02562 * 12 11 10 14 14 O 1.20828 * 119.99946 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00339 * 179.97438 * 13 12 11 16 16 N 1.46505 * 109.47131 * 179.97438 * 15 13 12 17 17 C 1.34777 * 119.99724 * 180.02562 * 16 15 13 18 18 O 1.21693 * 120.00201 * 359.97438 * 17 16 15 19 19 C 1.46425 * 119.99668 * 179.97438 * 17 16 15 20 20 C 1.34808 * 119.99920 * 179.97438 * 19 17 16 21 21 C 1.47207 * 120.00030 * 179.72181 * 20 19 17 22 22 C 1.40274 * 120.58671 * 180.27503 * 21 20 19 23 23 C 1.38285 * 118.26464 * 179.97438 * 22 21 20 24 24 C 1.38390 * 119.33667 * 0.02562 * 23 22 21 25 25 N 1.31936 * 121.14240 * 0.02562 * 24 23 22 26 26 C 1.31666 * 121.90014 * 359.67580 * 25 24 23 27 27 H 0.96993 * 120.00397 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.47000 * 59.99826 * 9 7 2 29 29 H 1.09005 * 109.47036 * 300.00122 * 9 7 2 30 30 H 1.09003 * 109.47261 * 60.00120 * 10 9 7 31 31 H 1.08996 * 109.47544 * 299.99880 * 10 9 7 32 32 H 1.09003 * 109.46823 * 60.00100 * 11 10 9 33 33 H 1.08991 * 109.47414 * 299.99759 * 11 10 9 34 34 H 1.09003 * 109.47039 * 60.00333 * 15 13 12 35 35 H 1.08993 * 109.47358 * 300.00015 * 15 13 12 36 36 H 0.97000 * 119.99792 * 359.97438 * 16 15 13 37 37 H 1.08001 * 120.00362 * 0.02562 * 19 17 16 38 38 H 1.08002 * 120.00248 * 0.02562 * 20 19 17 39 39 H 1.07993 * 120.86536 * 359.96328 * 22 21 20 40 40 H 1.08004 * 120.32758 * 180.02562 * 23 22 21 41 41 H 1.08006 * 119.42923 * 179.97438 * 24 23 22 42 42 H 1.08003 * 119.73852 * 180.29384 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 8 2.4238 -6.0907 -0.0005 13 6 1.9109 -7.3311 -0.0006 14 8 0.7130 -7.4895 0.0003 15 6 2.8289 -8.5262 -0.0018 16 7 2.0309 -9.7549 -0.0010 17 6 2.6429 -10.9557 -0.0013 18 8 3.8581 -11.0194 -0.0028 19 6 1.8454 -12.1838 0.0000 20 6 2.4574 -13.3849 -0.0009 21 6 1.6557 -14.6195 0.0067 22 6 2.2797 -15.8758 0.0117 23 6 1.4802 -17.0041 0.0192 24 6 0.1039 -16.8598 0.0211 25 7 -0.4570 -15.6656 0.0152 26 6 0.2589 -14.5606 0.0137 27 1 -0.4850 0.8399 -0.0004 28 1 0.6241 -2.5568 -0.8902 29 1 0.6248 -2.5572 0.8897 30 1 2.8720 -3.6043 0.8895 31 1 2.8720 -3.6044 -0.8905 32 1 0.8533 -5.0451 -0.8897 33 1 0.8540 -5.0446 0.8903 34 1 3.4584 -8.5017 0.8878 35 1 3.4570 -8.5010 -0.8922 36 1 1.0623 -9.7041 0.0005 37 1 0.7668 -12.1273 0.0008 38 1 3.5359 -13.4415 -0.0021 39 1 3.3564 -15.9596 0.0095 40 1 1.9256 -17.9880 0.0237 41 1 -0.5220 -17.7400 0.0265 42 1 -0.2368 -13.6011 0.0137 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493017162.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:37 Heat of formation + Delta-G solvation = -105.279467 kcal Electronic energy + Delta-G solvation = -23611.040884 eV Core-core repulsion = 19748.296898 eV Total energy + Delta-G solvation = -3862.743986 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.80897 -41.12785 -40.53291 -38.06835 -35.95646 -35.83184 -35.46701 -33.70886 -33.27034 -31.28127 -29.87689 -28.57330 -25.77831 -25.06174 -24.52911 -22.80847 -22.18448 -21.96646 -20.89051 -19.15761 -18.71840 -18.25582 -18.10594 -17.98397 -17.39239 -17.11539 -16.50018 -16.46267 -16.21374 -15.98377 -15.62612 -15.09389 -14.95386 -14.72251 -14.47177 -14.25539 -14.01528 -14.00754 -13.69441 -13.57363 -13.17384 -12.85806 -12.70788 -12.51563 -12.38557 -12.11778 -11.92691 -11.86306 -11.47334 -11.43374 -11.27871 -11.21178 -10.65169 -10.57782 -10.45234 -10.38716 -9.47378 -8.22129 -6.33292 -0.63574 0.28369 0.86972 0.96773 1.24758 1.41617 1.42364 1.55580 2.19396 2.22216 2.41574 2.90677 3.12221 3.35213 3.44237 3.59612 3.81834 3.90636 3.99613 4.03254 4.04426 4.14102 4.19848 4.21717 4.33616 4.40965 4.55611 4.80045 4.80644 4.80930 4.93220 5.05958 5.07635 5.10342 5.25143 5.34923 5.37964 5.50375 5.64241 5.70362 5.80535 6.19126 6.34061 6.50402 6.82960 6.95725 7.03796 7.36490 8.90147 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.046664 B = 0.001422 C = 0.001382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.894683 B =19687.917705 C =20256.745362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.543 4.543 8 H 0.065 0.935 9 C 0.025 3.975 10 C -0.096 4.096 11 C 0.079 3.921 12 O -0.351 6.351 13 C 0.460 3.540 14 O -0.531 6.531 15 C 0.133 3.867 16 N -0.714 5.714 17 C 0.554 3.446 18 O -0.577 6.577 19 C -0.211 4.211 20 C -0.004 4.004 21 C -0.137 4.137 22 C -0.056 4.056 23 C -0.170 4.170 24 C 0.095 3.905 25 N -0.518 5.518 26 C 0.105 3.895 27 H 0.264 0.736 28 H -0.002 1.002 29 H -0.002 1.002 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.419 0.581 37 H 0.154 0.846 38 H 0.139 0.861 39 H 0.163 0.837 40 H 0.169 0.831 41 H 0.179 0.821 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.938 -35.950 0.035 36.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.083 0.917 9 C -0.013 4.013 10 C -0.134 4.134 11 C 0.006 3.994 12 O -0.267 6.267 13 C 0.303 3.697 14 O -0.421 6.421 15 C 0.009 3.991 16 N -0.369 5.369 17 C 0.345 3.655 18 O -0.458 6.458 19 C -0.231 4.231 20 C -0.025 4.025 21 C -0.139 4.139 22 C -0.082 4.082 23 C -0.189 4.189 24 C -0.061 4.061 25 N -0.226 5.226 26 C -0.053 4.053 27 H 0.073 0.927 28 H 0.017 0.983 29 H 0.016 0.984 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.258 0.742 37 H 0.172 0.828 38 H 0.157 0.843 39 H 0.180 0.820 40 H 0.187 0.813 41 H 0.196 0.804 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.357 -35.785 0.032 36.049 hybrid contribution 0.165 1.285 -0.001 1.296 sum 4.522 -34.500 0.031 34.795 Atomic orbital electron populations 1.70098 1.07826 1.27837 1.51551 1.25974 0.95755 1.03412 0.94608 0.85365 0.79154 0.78612 0.77721 1.18404 1.20453 1.20445 1.21669 0.93772 0.91935 1.50734 0.91711 1.18947 0.94297 0.92431 0.95584 1.21475 0.98787 0.90432 1.02680 1.23204 0.90787 0.83198 1.02256 1.86460 1.42042 1.15126 1.83059 1.23892 0.88535 0.85469 0.71758 1.90660 1.17931 1.86730 1.46778 1.20701 0.91757 0.78873 1.07812 1.45654 1.11772 1.04170 1.75303 1.18559 0.87425 0.84068 0.75454 1.90828 1.15246 1.87916 1.51826 1.22862 1.01332 0.90909 1.08009 1.22267 1.00170 0.90099 0.89922 1.20069 0.94647 0.94292 1.04930 1.22235 1.02230 0.90996 0.92716 1.22479 0.94623 1.01100 1.00735 1.23454 0.94136 0.95488 0.92999 1.67696 1.41953 0.99685 1.13311 1.23424 0.90443 0.97824 0.93583 0.92707 0.98345 0.98359 0.91417 0.91408 0.91456 0.91445 0.85512 0.85503 0.74227 0.82824 0.84290 0.81981 0.81316 0.80400 0.81274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.15 13.29 21.45 0.28 -55.86 16 2 C 0.00 0.02 5.46 84.65 0.46 0.49 16 3 Si 0.97 43.65 29.54 68.60 2.03 45.67 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.54 -30.34 9.11 25.60 0.23 -30.10 16 8 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.02 1.27 4.97 29.85 0.15 1.41 16 10 C -0.10 -3.83 5.53 30.59 0.17 -3.66 16 11 C 0.08 2.72 5.47 71.98 0.39 3.11 16 12 O -0.35 -10.33 10.22 -51.36 -0.52 -10.86 16 13 C 0.46 11.68 8.03 71.24 0.57 12.25 16 14 O -0.53 -15.90 15.42 21.96 0.34 -15.56 16 15 C 0.13 2.47 6.27 85.63 0.54 3.01 16 16 N -0.71 -12.49 5.52 -471.08 -2.60 -15.10 16 17 C 0.55 10.32 7.74 86.37 0.67 10.99 16 18 O -0.58 -14.43 16.23 -4.33 -0.07 -14.50 16 19 C -0.21 -2.73 9.42 23.62 0.22 -2.50 16 20 C 0.00 -0.05 9.48 23.84 0.23 0.18 16 21 C -0.14 -1.56 5.88 -20.05 -0.12 -1.68 16 22 C -0.06 -0.45 9.95 22.78 0.23 -0.22 16 23 C -0.17 -1.09 10.09 22.32 0.23 -0.87 16 24 C 0.09 0.94 11.17 84.71 0.95 1.88 16 25 N -0.52 -7.93 10.34 -194.50 -2.01 -9.95 16 26 C 0.10 1.38 10.59 85.10 0.90 2.28 16 27 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 28 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 29 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 16 30 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.07 2.34 8.13 -2.39 -0.02 2.32 16 33 H 0.07 2.35 8.13 -2.39 -0.02 2.33 16 34 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.42 6.69 7.42 -92.71 -0.69 6.00 16 37 H 0.15 1.25 6.10 -2.91 -0.02 1.23 16 38 H 0.14 1.71 7.52 -2.91 -0.02 1.69 16 39 H 0.16 0.51 8.06 -2.91 -0.02 0.48 16 40 H 0.17 0.02 8.06 -2.91 -0.02 0.00 16 41 H 0.18 0.79 8.06 -2.91 -0.02 0.77 16 42 H 0.17 1.64 6.19 -2.91 -0.02 1.62 16 Total: -1.00 -73.73 373.62 3.61 -70.12 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.36 Total: 9.47 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 5.81 Total: -3.44 kcal Atomic # 7 Polarization: -76.58 SS G_CDS: -4.33 Total: -80.91 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: -0.26 Total: -40.92 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -73.73 3.61 -70.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493017162.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.159 kcal (2) G-P(sol) polarization free energy of solvation -73.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds