Wall clock time and date at job start Tue Mar 31 2020 11:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00073 * 2 1 4 4 H 1.48502 * 109.47104 * 269.99775 * 3 2 1 5 5 H 1.48503 * 109.47121 * 29.99408 * 3 2 1 6 6 H 1.48494 * 109.47585 * 149.99686 * 3 2 1 7 7 C 1.37874 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99877 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00252 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47421 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47605 * 179.97438 * 10 9 7 12 12 O 1.21289 * 119.99820 * 359.97438 * 11 10 9 13 13 N 1.34767 * 120.00527 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00383 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47398 * 180.02562 * 14 13 11 16 16 C 1.38300 * 119.96499 * 270.01865 * 15 14 13 17 17 C 1.38261 * 120.13842 * 179.97438 * 16 15 14 18 18 C 1.38137 * 120.07089 * 359.97438 * 17 16 15 19 19 C 1.38845 * 119.92963 * 0.03883 * 18 17 16 20 20 N 1.39950 * 120.07057 * 180.02562 * 19 18 17 21 21 C 1.47094 * 125.55704 * 359.95829 * 20 19 18 22 22 C 1.54089 * 103.77816 * 180.02562 * 21 20 19 23 23 O 1.45702 * 104.01009 * 0.02562 * 22 21 20 24 24 C 1.33791 * 109.47155 * 359.73385 * 23 22 21 25 25 O 1.21513 * 123.07001 * 180.29847 * 24 23 22 26 26 C 1.38095 * 119.96183 * 89.99806 * 15 14 13 27 27 H 0.97002 * 120.00358 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.47523 * 59.99377 * 9 7 2 29 29 H 1.09005 * 109.46945 * 299.99895 * 9 7 2 30 30 H 1.09001 * 109.47565 * 59.99366 * 10 9 7 31 31 H 1.09005 * 109.46813 * 299.99777 * 10 9 7 32 32 H 0.97004 * 119.99752 * 0.02562 * 13 11 10 33 33 H 1.08994 * 109.47513 * 60.00084 * 14 13 11 34 34 H 1.09005 * 109.47055 * 300.00094 * 14 13 11 35 35 H 1.07998 * 119.92961 * 359.95991 * 16 15 14 36 36 H 1.07995 * 119.96421 * 180.02562 * 17 16 15 37 37 H 1.08000 * 120.03428 * 180.02562 * 18 17 16 38 38 H 1.09004 * 110.56465 * 298.57400 * 21 20 19 39 39 H 1.09001 * 110.56433 * 61.28093 * 21 20 19 40 40 H 1.08998 * 110.51791 * 118.63415 * 22 21 20 41 41 H 1.09001 * 110.52013 * 241.36837 * 22 21 20 42 42 H 1.07998 * 120.03787 * 359.75147 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5285 -2.6366 0.0009 12 8 6.1350 -1.5862 0.0005 13 7 6.2024 -3.8036 0.0014 14 6 7.6674 -3.8037 0.0019 15 6 8.1698 -5.2245 0.0016 16 6 8.3993 -5.8762 1.1996 17 6 8.8597 -7.1799 1.2036 18 6 9.0914 -7.8358 0.0101 19 6 8.8622 -7.1841 -1.1943 20 7 9.0955 -7.8460 -2.4051 21 6 9.5826 -9.2268 -2.5452 22 6 9.6571 -9.4368 -4.0699 23 8 9.2095 -8.1655 -4.6233 24 6 8.9074 -7.3265 -3.6259 25 8 8.5023 -6.1959 -3.8103 26 6 8.4001 -5.8744 -1.1949 27 1 -0.4851 0.8400 -0.0004 28 1 3.8745 -0.6799 0.8910 29 1 3.8752 -0.6804 -0.8889 30 1 3.6585 -3.1502 -0.8892 31 1 3.6579 -3.1505 0.8908 32 1 5.7174 -4.6437 0.0013 33 1 8.0305 -3.2898 0.8918 34 1 8.0311 -3.2899 -0.8881 35 1 8.2187 -5.3657 2.1340 36 1 9.0375 -7.6863 2.1407 37 1 9.4506 -8.8543 0.0139 38 1 10.5701 -9.3319 -2.0959 39 1 8.8809 -9.9280 -2.0933 40 1 10.6815 -9.6474 -4.3769 41 1 8.9916 -10.2434 -4.3775 42 1 8.2165 -5.3664 -2.1301 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496001309.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:21 Heat of formation + Delta-G solvation = -76.306784 kcal Electronic energy + Delta-G solvation = -25350.920682 eV Core-core repulsion = 21489.433046 eV Total energy + Delta-G solvation = -3861.487636 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.41339 -39.91812 -38.95825 -37.79414 -36.29446 -34.56607 -33.40937 -31.69899 -31.39875 -30.96964 -29.55822 -27.11328 -25.37594 -24.47275 -24.16943 -21.85428 -21.29645 -20.88367 -19.65022 -18.38102 -18.03605 -17.54423 -17.15626 -16.75187 -15.96668 -15.84559 -15.64387 -15.18055 -15.05220 -14.78497 -14.60951 -14.53457 -14.06753 -13.96201 -13.43668 -13.16955 -13.15853 -12.96262 -12.74940 -12.50192 -12.27793 -11.90246 -11.57982 -11.34887 -11.33430 -10.90026 -10.84698 -10.60817 -10.09919 -9.98271 -9.73880 -9.47009 -9.13381 -8.98466 -8.81482 -8.45395 -8.44805 -5.97919 -3.96272 0.80739 0.98943 1.71020 2.22070 2.77841 3.20503 3.27031 3.39670 3.42919 3.49012 3.60629 3.80307 3.91163 3.97878 4.39720 4.48023 4.53661 4.56175 4.69230 4.73587 4.83683 4.93520 4.98671 5.23890 5.37711 5.42211 5.50021 5.65643 5.83090 5.91027 5.99385 6.05564 6.15729 6.17740 6.33657 6.60279 6.66452 6.76807 6.77542 7.42922 7.43490 7.50325 7.82339 7.87199 8.55835 8.72809 9.05443 9.65363 11.14945 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019576 B = 0.002360 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.007125 B =11859.909009 C =12566.932744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.523 4.523 8 H 0.072 0.928 9 C 0.001 3.999 10 C -0.122 4.122 11 C 0.511 3.489 12 O -0.541 6.541 13 N -0.737 5.737 14 C 0.159 3.841 15 C -0.070 4.070 16 C -0.121 4.121 17 C -0.092 4.092 18 C -0.151 4.151 19 C 0.176 3.824 20 N -0.571 5.571 21 C 0.059 3.941 22 C 0.041 3.959 23 O -0.319 6.319 24 C 0.642 3.358 25 O -0.493 6.493 26 C -0.134 4.134 27 H 0.263 0.737 28 H 0.024 0.976 29 H 0.019 0.981 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.400 0.600 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.011 -27.371 -1.713 37.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.561 4.561 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.161 4.161 11 C 0.299 3.701 12 O -0.417 6.417 13 N -0.391 5.391 14 C 0.036 3.964 15 C -0.071 4.071 16 C -0.141 4.141 17 C -0.111 4.111 18 C -0.172 4.172 19 C 0.084 3.916 20 N -0.308 5.308 21 C -0.063 4.063 22 C -0.033 4.033 23 O -0.229 6.229 24 C 0.397 3.603 25 O -0.376 6.376 26 C -0.155 4.155 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.038 0.962 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.233 0.767 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.143 0.857 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 25.086 -25.858 -2.161 36.092 hybrid contribution 0.266 0.053 0.055 0.276 sum 25.352 -25.804 -2.107 36.236 Atomic orbital electron populations 1.69914 1.06290 1.26920 1.51242 1.24975 0.94716 0.99243 0.94374 0.86789 0.80615 0.83352 0.78766 1.20238 1.21494 1.18499 1.21124 0.89320 0.94548 1.51149 0.90947 1.19372 0.96357 0.90266 0.97684 1.21665 0.87900 1.03233 1.03351 1.21550 0.91556 0.82681 0.74293 1.90655 1.70784 1.31431 1.48806 1.46190 1.05779 1.09405 1.77708 1.20129 0.81532 0.91586 1.03203 1.19845 0.98813 0.95944 0.92545 1.21167 1.00048 0.94958 0.97903 1.20920 0.98264 0.94583 0.97296 1.20698 1.05446 1.00354 0.90653 1.17346 0.99827 0.91987 0.82480 1.45359 1.65838 1.14569 1.05007 1.22985 1.02767 0.83336 0.97237 1.24366 1.03425 0.84787 0.90759 1.87365 1.79232 1.25241 1.31105 1.18494 0.77627 0.84807 0.79372 1.91014 1.48155 1.14718 1.83716 1.21560 1.00371 0.93028 1.00531 0.92766 0.95805 0.96241 0.89608 0.89601 0.76660 0.90605 0.90681 0.85305 0.85144 0.85671 0.88096 0.88018 0.87019 0.86983 0.82320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.59 13.96 55.43 0.77 -27.82 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 23.18 27.47 -169.99 -4.67 18.51 16 4 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.26 -6.85 6.54 56.52 0.37 -6.48 16 7 C -0.52 -15.38 9.66 -34.44 -0.33 -15.72 16 8 H 0.07 2.21 7.99 -52.48 -0.42 1.80 16 9 C 0.00 0.03 3.33 -27.89 -0.09 -0.06 16 10 C -0.12 -2.47 5.64 -27.89 -0.16 -2.63 16 11 C 0.51 9.80 7.83 -10.99 -0.09 9.72 16 12 O -0.54 -12.50 15.98 5.55 0.09 -12.42 16 13 N -0.74 -10.71 5.55 -61.47 -0.34 -11.05 16 14 C 0.16 2.08 5.80 -5.19 -0.03 2.05 16 15 C -0.07 -0.76 5.25 -104.65 -0.55 -1.31 16 16 C -0.12 -1.06 9.70 -39.55 -0.38 -1.44 16 17 C -0.09 -0.64 10.04 -39.61 -0.40 -1.03 16 18 C -0.15 -1.02 9.49 -39.39 -0.37 -1.40 16 19 C 0.18 1.63 6.63 -83.68 -0.56 1.08 16 20 N -0.57 -4.63 3.16 -118.26 -0.37 -5.00 16 21 C 0.06 0.16 6.49 -3.15 -0.02 0.14 16 22 C 0.04 0.10 8.23 37.73 0.31 0.41 16 23 O -0.32 -2.77 11.09 -37.88 -0.42 -3.19 16 24 C 0.64 7.16 8.77 53.71 0.47 7.63 16 25 O -0.49 -7.59 14.75 -19.12 -0.28 -7.87 16 26 C -0.13 -1.56 8.96 -39.39 -0.35 -1.91 16 27 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 28 H 0.02 0.64 7.16 -51.93 -0.37 0.26 16 29 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 30 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 31 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 32 H 0.40 4.86 8.46 -40.82 -0.35 4.51 16 33 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 34 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.13 0.48 7.31 -52.49 -0.38 0.09 16 38 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 39 H 0.10 0.08 8.14 -51.93 -0.42 -0.34 16 40 H 0.11 -0.01 8.14 -51.93 -0.42 -0.43 16 41 H 0.11 0.01 8.14 -51.93 -0.42 -0.41 16 42 H 0.16 2.24 5.24 -52.49 -0.28 1.96 16 LS Contribution 357.12 15.07 5.38 5.38 Total: -1.00 -39.26 357.12 -8.06 -47.32 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -5.57 Total: -1.35 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -2.65 Total: -2.50 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.06 Total: -43.88 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.61 Total: -23.48 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -4.67 Total: 18.51 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -39.26 -8.06 -47.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496001309.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.985 kcal (2) G-P(sol) polarization free energy of solvation -39.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds