Wall clock time and date at job start Tue Mar 31 2020 11:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00073 * 2 1 4 4 H 1.48502 * 109.47104 * 269.99775 * 3 2 1 5 5 H 1.48503 * 109.47121 * 29.99408 * 3 2 1 6 6 H 1.48494 * 109.47585 * 149.99686 * 3 2 1 7 7 C 1.37874 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99877 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00252 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47421 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47605 * 179.97438 * 10 9 7 12 12 O 1.21289 * 119.99820 * 359.97438 * 11 10 9 13 13 N 1.34767 * 120.00527 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00383 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47398 * 180.02562 * 14 13 11 16 16 C 1.38300 * 119.96499 * 270.01865 * 15 14 13 17 17 C 1.38261 * 120.13842 * 179.97438 * 16 15 14 18 18 C 1.38137 * 120.07089 * 359.97438 * 17 16 15 19 19 C 1.38845 * 119.92963 * 0.03883 * 18 17 16 20 20 N 1.39950 * 120.07057 * 180.02562 * 19 18 17 21 21 C 1.47094 * 125.55704 * 359.95829 * 20 19 18 22 22 C 1.54089 * 103.77816 * 180.02562 * 21 20 19 23 23 O 1.45702 * 104.01009 * 0.02562 * 22 21 20 24 24 C 1.33791 * 109.47155 * 359.73385 * 23 22 21 25 25 O 1.21513 * 123.07001 * 180.29847 * 24 23 22 26 26 C 1.38095 * 119.96183 * 89.99806 * 15 14 13 27 27 H 0.97002 * 120.00358 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.47523 * 59.99377 * 9 7 2 29 29 H 1.09005 * 109.46945 * 299.99895 * 9 7 2 30 30 H 1.09001 * 109.47565 * 59.99366 * 10 9 7 31 31 H 1.09005 * 109.46813 * 299.99777 * 10 9 7 32 32 H 0.97004 * 119.99752 * 0.02562 * 13 11 10 33 33 H 1.08994 * 109.47513 * 60.00084 * 14 13 11 34 34 H 1.09005 * 109.47055 * 300.00094 * 14 13 11 35 35 H 1.07998 * 119.92961 * 359.95991 * 16 15 14 36 36 H 1.07995 * 119.96421 * 180.02562 * 17 16 15 37 37 H 1.08000 * 120.03428 * 180.02562 * 18 17 16 38 38 H 1.09004 * 110.56465 * 298.57400 * 21 20 19 39 39 H 1.09001 * 110.56433 * 61.28093 * 21 20 19 40 40 H 1.08998 * 110.51791 * 118.63415 * 22 21 20 41 41 H 1.09001 * 110.52013 * 241.36837 * 22 21 20 42 42 H 1.07998 * 120.03787 * 359.75147 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5285 -2.6366 0.0009 12 8 6.1350 -1.5862 0.0005 13 7 6.2024 -3.8036 0.0014 14 6 7.6674 -3.8037 0.0019 15 6 8.1698 -5.2245 0.0016 16 6 8.3993 -5.8762 1.1996 17 6 8.8597 -7.1799 1.2036 18 6 9.0914 -7.8358 0.0101 19 6 8.8622 -7.1841 -1.1943 20 7 9.0955 -7.8460 -2.4051 21 6 9.5826 -9.2268 -2.5452 22 6 9.6571 -9.4368 -4.0699 23 8 9.2095 -8.1655 -4.6233 24 6 8.9074 -7.3265 -3.6259 25 8 8.5023 -6.1959 -3.8103 26 6 8.4001 -5.8744 -1.1949 27 1 -0.4851 0.8400 -0.0004 28 1 3.8745 -0.6799 0.8910 29 1 3.8752 -0.6804 -0.8889 30 1 3.6585 -3.1502 -0.8892 31 1 3.6579 -3.1505 0.8908 32 1 5.7174 -4.6437 0.0013 33 1 8.0305 -3.2898 0.8918 34 1 8.0311 -3.2899 -0.8881 35 1 8.2187 -5.3657 2.1340 36 1 9.0375 -7.6863 2.1407 37 1 9.4506 -8.8543 0.0139 38 1 10.5701 -9.3319 -2.0959 39 1 8.8809 -9.9280 -2.0933 40 1 10.6815 -9.6474 -4.3769 41 1 8.9916 -10.2434 -4.3775 42 1 8.2165 -5.3664 -2.1301 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496001309.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:20 Heat of formation + Delta-G solvation = -105.086336 kcal Electronic energy + Delta-G solvation = -25352.168657 eV Core-core repulsion = 21489.433046 eV Total energy + Delta-G solvation = -3862.735611 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.99744 -40.94319 -40.13402 -38.59724 -37.03821 -35.74048 -35.47826 -33.41378 -32.29660 -31.84949 -30.05657 -28.64146 -26.76432 -25.02482 -24.79734 -23.17196 -22.42258 -21.72569 -21.21304 -19.32909 -18.93333 -18.52297 -18.12058 -17.66474 -17.42705 -16.87727 -16.81146 -16.36664 -16.23912 -15.63558 -15.48074 -15.21819 -15.02369 -14.86148 -14.68440 -14.56993 -14.52722 -14.10072 -13.58105 -13.47276 -13.40686 -13.22550 -12.91681 -12.78071 -12.31717 -12.10205 -11.97789 -11.92150 -11.77918 -11.42244 -11.41430 -11.28198 -10.87760 -10.79085 -10.14873 -9.89890 -9.08237 -8.32392 -6.35235 0.12848 0.29611 1.15667 1.32778 1.33966 1.48408 1.49846 1.65425 2.26105 2.34488 2.41228 2.86605 3.03056 3.20708 3.35874 3.69605 3.92215 3.98477 4.01739 4.10582 4.26261 4.32513 4.36229 4.38198 4.47403 4.51183 4.64971 4.66777 4.67785 4.73506 4.98355 5.00615 5.28636 5.30242 5.33763 5.41614 5.43245 5.44579 5.59876 5.60183 5.95696 6.18002 6.22591 6.53577 6.70604 6.70760 7.25781 7.29987 8.83292 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019576 B = 0.002360 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.007125 B =11859.909009 C =12566.932744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.939 3.061 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.529 4.529 8 H 0.050 0.950 9 C 0.005 3.995 10 C -0.116 4.116 11 C 0.514 3.486 12 O -0.586 6.586 13 N -0.715 5.715 14 C 0.161 3.839 15 C -0.082 4.082 16 C -0.123 4.123 17 C -0.083 4.083 18 C -0.131 4.131 19 C 0.163 3.837 20 N -0.568 5.568 21 C 0.055 3.945 22 C 0.034 3.966 23 O -0.341 6.341 24 C 0.634 3.366 25 O -0.555 6.555 26 C -0.161 4.161 27 H 0.268 0.732 28 H 0.013 0.987 29 H 0.006 0.994 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.413 0.587 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.140 0.860 36 H 0.167 0.833 37 H 0.167 0.833 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.266 -30.819 -0.164 41.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.184 4.184 3 Si 0.763 3.237 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.567 4.567 8 H 0.069 0.931 9 C -0.033 4.033 10 C -0.156 4.156 11 C 0.303 3.697 12 O -0.466 6.466 13 N -0.367 5.367 14 C 0.038 3.962 15 C -0.083 4.083 16 C -0.142 4.142 17 C -0.101 4.101 18 C -0.151 4.151 19 C 0.071 3.929 20 N -0.304 5.304 21 C -0.065 4.065 22 C -0.039 4.039 23 O -0.251 6.251 24 C 0.390 3.610 25 O -0.443 6.443 26 C -0.182 4.182 27 H 0.077 0.923 28 H 0.031 0.969 29 H 0.024 0.976 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.250 0.750 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.158 0.842 36 H 0.185 0.815 37 H 0.185 0.815 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.157 0.843 41 H 0.155 0.845 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 27.368 -29.421 -0.607 40.187 hybrid contribution -0.389 0.893 -0.445 1.071 sum 26.979 -28.528 -1.052 39.279 Atomic orbital electron populations 1.70020 1.07723 1.28117 1.52484 1.25805 0.95536 1.02855 0.94248 0.85824 0.79282 0.79497 0.79083 1.19600 1.20058 1.18544 1.21419 0.91156 0.93772 1.50364 0.93137 1.19226 0.94028 0.93663 0.96399 1.21498 0.88991 1.00041 1.05028 1.21243 0.91084 0.83204 0.74184 1.90637 1.71377 1.33184 1.51359 1.45964 1.06726 1.08623 1.75418 1.20136 0.80113 0.93700 1.02238 1.19552 1.00677 0.94606 0.93435 1.21349 0.99744 0.95987 0.97128 1.21355 0.96314 0.93581 0.98859 1.21131 1.03131 1.01768 0.89085 1.17524 1.00032 0.91428 0.83931 1.45477 1.64915 1.16419 1.03614 1.23474 1.04901 0.80568 0.97601 1.24923 1.05604 0.82653 0.90723 1.87321 1.79108 1.27345 1.31330 1.18782 0.77209 0.84485 0.80559 1.90969 1.50920 1.17527 1.84861 1.21373 1.02675 0.94765 0.99383 0.92332 0.96872 0.97569 0.88370 0.87542 0.75021 0.90262 0.92908 0.84225 0.81537 0.81523 0.85168 0.85290 0.84330 0.84511 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.40 13.96 21.45 0.30 -60.10 16 2 C 0.01 0.81 5.47 84.65 0.46 1.27 16 3 Si 0.94 48.36 27.47 68.60 1.88 50.24 16 4 H -0.27 -13.60 7.11 99.48 0.71 -12.90 16 5 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.26 -13.39 6.54 99.48 0.65 -12.74 16 7 C -0.53 -31.63 9.66 25.60 0.25 -31.38 16 8 H 0.05 3.16 7.99 -2.91 -0.02 3.14 16 9 C 0.00 0.25 3.33 29.85 0.10 0.35 16 10 C -0.12 -4.70 5.64 29.85 0.17 -4.53 16 11 C 0.51 19.97 7.83 87.66 0.69 20.66 16 12 O -0.59 -27.76 15.98 -3.06 -0.05 -27.81 16 13 N -0.71 -20.91 5.55 -466.80 -2.59 -23.50 16 14 C 0.16 4.37 5.80 85.63 0.50 4.87 16 15 C -0.08 -1.75 5.25 -19.88 -0.10 -1.85 16 16 C -0.12 -1.84 9.70 22.29 0.22 -1.62 16 17 C -0.08 -0.77 10.04 22.25 0.22 -0.55 16 18 C -0.13 -1.19 9.49 22.39 0.21 -0.98 16 19 C 0.16 2.78 6.63 38.15 0.25 3.03 16 20 N -0.57 -8.37 3.16 -759.79 -2.40 -10.77 16 21 C 0.05 0.07 6.49 86.63 0.56 0.63 16 22 C 0.03 0.06 8.23 72.35 0.60 0.66 16 23 O -0.34 -5.85 11.09 -47.50 -0.53 -6.37 16 24 C 0.63 14.67 8.77 129.91 1.14 15.81 16 25 O -0.56 -18.84 14.75 19.64 0.29 -18.55 16 26 C -0.16 -3.87 8.96 22.39 0.20 -3.67 16 27 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 28 H 0.01 0.70 7.16 -2.39 -0.02 0.68 16 29 H 0.01 0.32 7.53 -2.38 -0.02 0.31 16 30 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 31 H 0.11 3.86 8.14 -2.38 -0.02 3.84 16 32 H 0.41 9.83 8.46 -92.71 -0.78 9.05 16 33 H 0.08 2.09 8.09 -2.39 -0.02 2.07 16 34 H 0.05 1.66 8.08 -2.38 -0.02 1.64 16 35 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 36 H 0.17 0.44 8.06 -2.91 -0.02 0.41 16 37 H 0.17 0.14 7.31 -2.91 -0.02 0.12 16 38 H 0.13 -0.55 8.14 -2.39 -0.02 -0.57 16 39 H 0.13 -0.49 8.14 -2.39 -0.02 -0.51 16 40 H 0.14 -0.52 8.14 -2.39 -0.02 -0.54 16 41 H 0.14 -0.46 8.14 -2.39 -0.02 -0.48 16 42 H 0.12 3.91 5.24 -2.91 -0.02 3.89 16 Total: -1.00 -91.45 357.12 2.58 -88.87 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 0.21 Total: 5.31 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 5.46 Total: 2.68 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -4.69 Total: -94.37 kcal Atomic # 8 Polarization: -52.45 SS G_CDS: -0.29 Total: -52.73 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 1.88 Total: 50.24 kcal Total: -91.45 2.58 -88.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496001309.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.217 kcal (2) G-P(sol) polarization free energy of solvation -91.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds