Wall clock time and date at job start Tue Mar 31 2020 12:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21254 * 120.00162 * 2 1 4 4 C 1.47183 * 119.99980 * 180.02562 * 2 1 3 5 5 C 1.39765 * 120.13206 * 353.83185 * 4 2 1 6 6 C 1.38588 * 119.74028 * 180.02562 * 5 4 2 7 7 N 1.39766 * 119.99091 * 179.97438 * 6 5 4 8 8 C 1.34774 * 119.99583 * 328.18285 * 7 6 5 9 9 O 1.21375 * 120.00530 * 354.15963 * 8 7 6 10 10 C 1.49363 * 119.99828 * 174.16242 * 8 7 6 11 11 O 1.21366 * 119.99519 * 359.97438 * 10 8 7 12 12 N 1.34771 * 120.00225 * 179.97438 * 10 8 7 13 13 C 1.46493 * 120.00203 * 179.97438 * 12 10 8 14 14 C 1.53000 * 109.47283 * 179.97438 * 13 12 10 15 15 C 1.50702 * 109.47033 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00005 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99755 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00062 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99877 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47016 * 89.99710 * 19 17 15 21 21 H 1.48500 * 109.47291 * 209.99515 * 19 17 15 22 22 H 1.48497 * 109.46997 * 329.99913 * 19 17 15 23 23 C 1.39082 * 120.02010 * 359.97348 * 6 5 4 24 24 C 1.38242 * 120.27134 * 0.30458 * 23 6 5 25 25 C 1.37959 * 120.25887 * 359.43904 * 24 23 6 26 26 C 1.50697 * 120.01072 * 180.25635 * 25 24 23 27 27 H 1.08993 * 109.47276 * 270.00392 * 1 2 3 28 28 H 1.09009 * 109.46877 * 29.99737 * 1 2 3 29 29 H 1.08995 * 109.47278 * 149.99708 * 1 2 3 30 30 H 1.08000 * 120.12764 * 0.04535 * 5 4 2 31 31 H 0.96995 * 119.99690 * 148.17293 * 7 6 5 32 32 H 0.97006 * 119.99490 * 359.97438 * 12 10 8 33 33 H 1.09000 * 109.47038 * 299.99803 * 13 12 10 34 34 H 1.09008 * 109.47127 * 59.99754 * 13 12 10 35 35 H 1.09000 * 109.47094 * 299.99978 * 14 13 12 36 36 H 1.08995 * 109.47317 * 59.99985 * 14 13 12 37 37 H 0.97002 * 119.99977 * 180.02562 * 18 17 15 38 38 H 1.07999 * 119.86454 * 180.02562 * 23 6 5 39 39 H 1.08005 * 119.86991 * 179.70167 * 24 23 6 40 40 H 1.08999 * 109.47211 * 262.60791 * 26 25 24 41 41 H 1.08996 * 109.47181 * 22.60752 * 26 25 24 42 42 H 1.09003 * 109.46798 * 142.61061 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2746 -0.0006 5 6 1.5529 -2.4832 0.1288 6 6 2.2541 -3.6786 0.1278 7 7 1.5694 -4.8902 0.2573 8 6 0.4369 -4.9497 0.9855 9 8 0.0683 -3.9795 1.6149 10 6 -0.3648 -6.2095 1.0179 11 8 0.0035 -7.1794 0.3882 12 7 -1.4971 -6.2692 1.7465 13 6 -2.2836 -7.5046 1.7779 14 6 -3.5093 -7.3063 2.6719 15 6 -4.3181 -8.5775 2.7046 16 1 -3.9909 -9.4403 2.1436 17 6 -5.4764 -8.6386 3.4501 18 7 -5.8752 -7.5877 4.1329 19 14 -6.4794 -10.2140 3.4902 20 1 -6.0095 -11.0716 4.6077 21 1 -7.9133 -9.8831 3.6893 22 1 -6.3126 -10.9397 2.2054 23 6 3.6388 -3.6731 -0.0022 24 6 4.3224 -2.4778 -0.1244 25 6 3.6354 -1.2814 -0.1300 26 6 4.3858 0.0180 -0.2694 27 1 -0.3633 0.0001 1.0276 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3633 -0.8899 -0.5138 30 1 0.4776 -2.4855 0.2288 31 1 1.9093 -5.6881 -0.1770 32 1 -1.7911 -5.4940 2.2501 33 1 -2.6071 -7.7552 0.7676 34 1 -1.6720 -8.3148 2.1750 35 1 -3.1855 -7.0560 3.6821 36 1 -4.1211 -6.4962 2.2752 37 1 -6.6899 -7.6308 4.6576 38 1 4.1826 -4.6062 -0.0031 39 1 5.3982 -2.4808 -0.2201 40 1 4.5429 0.4545 0.7170 41 1 5.3502 -0.1682 -0.7420 42 1 3.8071 0.7076 -0.8839 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572615243.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:32 Heat of formation + Delta-G solvation = -86.545270 kcal Electronic energy + Delta-G solvation = -25203.536565 eV Core-core repulsion = 21341.604955 eV Total energy + Delta-G solvation = -3861.931610 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.28000 -40.24893 -38.95477 -38.02864 -35.74605 -34.89698 -32.93881 -32.59971 -31.74674 -29.93994 -29.57866 -27.27932 -25.57559 -24.46098 -23.70218 -21.87278 -21.09877 -20.35163 -20.30517 -18.59600 -17.62556 -16.84168 -16.45619 -16.09505 -15.98686 -15.65039 -15.40767 -15.33200 -14.97500 -14.58173 -14.55093 -14.17137 -14.09369 -13.73230 -13.59755 -13.09972 -12.74333 -12.48487 -12.44486 -12.37577 -12.25160 -12.13918 -12.09954 -11.48858 -11.30024 -11.11372 -10.71835 -10.65896 -10.47603 -9.90233 -9.77996 -9.57599 -9.37373 -9.28821 -8.82923 -8.48018 -8.41470 -6.15260 -4.19218 0.29641 0.80181 1.46694 2.09074 2.25530 3.14981 3.25598 3.32170 3.35353 3.44247 3.59445 3.78564 4.33404 4.37764 4.55255 4.58653 4.63169 4.82119 4.92967 5.02392 5.14949 5.20258 5.21837 5.36212 5.48266 5.50007 5.68156 5.72116 5.79227 5.90093 5.97383 6.07765 6.14529 6.23070 6.44757 6.51836 6.58946 6.79463 7.24199 7.33705 7.47958 7.50340 7.69975 7.81304 8.07854 8.22314 8.86300 9.46068 10.96146 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024063 B = 0.002216 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.336570 B =12633.360510 C =13604.712751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.398 3.602 3 O -0.455 6.455 4 C -0.157 4.157 5 C -0.072 4.072 6 C 0.128 3.872 7 N -0.648 5.648 8 C 0.509 3.491 9 O -0.499 6.499 10 C 0.500 3.500 11 O -0.529 6.529 12 N -0.682 5.682 13 C 0.118 3.882 14 C 0.011 3.989 15 C -0.525 4.525 16 H 0.060 0.940 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.898 3.102 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.272 1.272 23 C -0.105 4.105 24 C -0.115 4.115 25 C -0.040 4.040 26 C -0.119 4.119 27 H 0.101 0.899 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.149 0.851 31 H 0.425 0.575 32 H 0.411 0.589 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.025 0.975 36 H 0.025 0.975 37 H 0.263 0.737 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.289 12.764 -9.784 25.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.277 3.723 3 O -0.332 6.332 4 C -0.159 4.159 5 C -0.092 4.092 6 C 0.034 3.966 7 N -0.296 5.296 8 C 0.291 3.709 9 O -0.372 6.372 10 C 0.278 3.722 11 O -0.407 6.407 12 N -0.333 5.333 13 C -0.003 4.003 14 C -0.027 4.027 15 C -0.563 4.563 16 H 0.079 0.921 17 C -0.143 4.143 18 N -0.530 5.530 19 Si 0.726 3.274 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.125 4.125 24 C -0.133 4.133 25 C -0.041 4.041 26 C -0.175 4.175 27 H 0.120 0.880 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.166 0.834 31 H 0.263 0.737 32 H 0.247 0.753 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 19.346 13.309 -9.645 25.385 hybrid contribution -0.645 -1.145 0.227 1.334 sum 18.700 12.164 -9.417 24.215 Atomic orbital electron populations 1.22246 0.93439 1.04909 1.05257 1.22445 0.91751 0.87328 0.70752 1.90491 1.71601 1.34455 1.36628 1.20227 0.93876 0.94571 1.07224 1.21511 1.01262 0.89990 0.96451 1.17605 0.91111 0.85562 1.02326 1.43187 1.24645 1.11263 1.50473 1.20704 0.81562 0.89615 0.78980 1.90771 1.68521 1.37341 1.40592 1.19703 0.83017 0.87485 0.81956 1.90762 1.69802 1.36652 1.43444 1.46247 1.22534 1.18318 1.46159 1.21990 0.93335 0.83224 1.01789 1.19361 0.90405 0.98449 0.94437 1.20995 1.07689 0.97919 1.29716 0.92138 1.25003 0.97465 0.96631 0.95166 1.69951 1.23721 1.29089 1.30244 0.86491 0.79222 0.83144 0.78569 1.20525 1.21130 1.19713 1.21165 0.91772 0.99364 1.00239 1.20854 1.00108 0.90881 1.01496 1.20230 0.92478 0.96162 0.95266 1.21047 0.99102 0.94102 1.03248 0.88019 0.89320 0.89541 0.83369 0.73704 0.75279 0.91668 0.91687 0.95635 0.95621 0.92719 0.84799 0.84801 0.90617 0.92161 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.60 9.63 36.01 0.35 -1.26 16 2 C 0.40 4.10 7.16 -30.68 -0.22 3.88 16 3 O -0.46 -5.55 14.10 5.58 0.08 -5.47 16 4 C -0.16 -1.63 5.87 -105.09 -0.62 -2.25 16 5 C -0.07 -0.77 7.93 -38.88 -0.31 -1.08 16 6 C 0.13 1.30 6.30 -83.80 -0.53 0.78 16 7 N -0.65 -6.85 5.33 -10.33 -0.06 -6.90 16 8 C 0.51 6.75 7.62 -11.63 -0.09 6.67 16 9 O -0.50 -7.30 14.08 5.47 0.08 -7.22 16 10 C 0.50 7.75 7.89 -11.63 -0.09 7.66 16 11 O -0.53 -9.13 16.49 5.48 0.09 -9.04 16 12 N -0.68 -11.36 5.55 -60.76 -0.34 -11.69 16 13 C 0.12 2.32 5.61 -4.05 -0.02 2.30 16 14 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 15 C -0.52 -14.00 9.11 -34.44 -0.31 -14.32 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -25.54 13.29 55.43 0.74 -24.80 16 19 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 23 C -0.11 -0.85 9.95 -39.27 -0.39 -1.24 16 24 C -0.11 -0.90 9.65 -39.68 -0.38 -1.28 16 25 C -0.04 -0.38 5.92 -104.12 -0.62 -1.00 16 26 C -0.12 -1.00 8.68 36.00 0.31 -0.69 16 27 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.09 0.62 6.73 -51.93 -0.35 0.27 16 30 H 0.15 1.64 4.79 -52.49 -0.25 1.38 16 31 H 0.42 3.74 8.29 -40.82 -0.34 3.40 16 32 H 0.41 6.45 7.94 -40.82 -0.32 6.13 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.06 1.30 8.14 -51.92 -0.42 0.87 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.13 0.71 8.05 -52.48 -0.42 0.29 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.38 8.03 -51.93 -0.42 -0.04 16 42 H 0.09 0.86 5.93 -51.93 -0.31 0.55 16 LS Contribution 362.41 15.07 5.46 5.46 Total: -1.00 -31.32 362.41 -7.46 -38.79 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.33 Total: 5.25 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -3.16 Total: -0.19 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.34 Total: -43.40 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: 0.25 Total: -21.73 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.32 -7.46 -38.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572615243.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.760 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds