Wall clock time and date at job start Tue Mar 31 2020 12:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21254 * 120.00162 * 2 1 4 4 C 1.47183 * 119.99980 * 180.02562 * 2 1 3 5 5 C 1.39765 * 120.13206 * 353.83185 * 4 2 1 6 6 C 1.38588 * 119.74028 * 180.02562 * 5 4 2 7 7 N 1.39766 * 119.99091 * 179.97438 * 6 5 4 8 8 C 1.34774 * 119.99583 * 328.18285 * 7 6 5 9 9 O 1.21375 * 120.00530 * 354.15963 * 8 7 6 10 10 C 1.49363 * 119.99828 * 174.16242 * 8 7 6 11 11 O 1.21366 * 119.99519 * 359.97438 * 10 8 7 12 12 N 1.34771 * 120.00225 * 179.97438 * 10 8 7 13 13 C 1.46493 * 120.00203 * 179.97438 * 12 10 8 14 14 C 1.53000 * 109.47283 * 179.97438 * 13 12 10 15 15 C 1.50702 * 109.47033 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00005 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99755 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00062 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99877 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47016 * 89.99710 * 19 17 15 21 21 H 1.48500 * 109.47291 * 209.99515 * 19 17 15 22 22 H 1.48497 * 109.46997 * 329.99913 * 19 17 15 23 23 C 1.39082 * 120.02010 * 359.97348 * 6 5 4 24 24 C 1.38242 * 120.27134 * 0.30458 * 23 6 5 25 25 C 1.37959 * 120.25887 * 359.43904 * 24 23 6 26 26 C 1.50697 * 120.01072 * 180.25635 * 25 24 23 27 27 H 1.08993 * 109.47276 * 270.00392 * 1 2 3 28 28 H 1.09009 * 109.46877 * 29.99737 * 1 2 3 29 29 H 1.08995 * 109.47278 * 149.99708 * 1 2 3 30 30 H 1.08000 * 120.12764 * 0.04535 * 5 4 2 31 31 H 0.96995 * 119.99690 * 148.17293 * 7 6 5 32 32 H 0.97006 * 119.99490 * 359.97438 * 12 10 8 33 33 H 1.09000 * 109.47038 * 299.99803 * 13 12 10 34 34 H 1.09008 * 109.47127 * 59.99754 * 13 12 10 35 35 H 1.09000 * 109.47094 * 299.99978 * 14 13 12 36 36 H 1.08995 * 109.47317 * 59.99985 * 14 13 12 37 37 H 0.97002 * 119.99977 * 180.02562 * 18 17 15 38 38 H 1.07999 * 119.86454 * 180.02562 * 23 6 5 39 39 H 1.08005 * 119.86991 * 179.70167 * 24 23 6 40 40 H 1.08999 * 109.47211 * 262.60791 * 26 25 24 41 41 H 1.08996 * 109.47181 * 22.60752 * 26 25 24 42 42 H 1.09003 * 109.46798 * 142.61061 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2746 -0.0006 5 6 1.5529 -2.4832 0.1288 6 6 2.2541 -3.6786 0.1278 7 7 1.5694 -4.8902 0.2573 8 6 0.4369 -4.9497 0.9855 9 8 0.0683 -3.9795 1.6149 10 6 -0.3648 -6.2095 1.0179 11 8 0.0035 -7.1794 0.3882 12 7 -1.4971 -6.2692 1.7465 13 6 -2.2836 -7.5046 1.7779 14 6 -3.5093 -7.3063 2.6719 15 6 -4.3181 -8.5775 2.7046 16 1 -3.9909 -9.4403 2.1436 17 6 -5.4764 -8.6386 3.4501 18 7 -5.8752 -7.5877 4.1329 19 14 -6.4794 -10.2140 3.4902 20 1 -6.0095 -11.0716 4.6077 21 1 -7.9133 -9.8831 3.6893 22 1 -6.3126 -10.9397 2.2054 23 6 3.6388 -3.6731 -0.0022 24 6 4.3224 -2.4778 -0.1244 25 6 3.6354 -1.2814 -0.1300 26 6 4.3858 0.0180 -0.2694 27 1 -0.3633 0.0001 1.0276 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3633 -0.8899 -0.5138 30 1 0.4776 -2.4855 0.2288 31 1 1.9093 -5.6881 -0.1770 32 1 -1.7911 -5.4940 2.2501 33 1 -2.6071 -7.7552 0.7676 34 1 -1.6720 -8.3148 2.1750 35 1 -3.1855 -7.0560 3.6821 36 1 -4.1211 -6.4962 2.2752 37 1 -6.6899 -7.6308 4.6576 38 1 4.1826 -4.6062 -0.0031 39 1 5.3982 -2.4808 -0.2201 40 1 4.5429 0.4545 0.7170 41 1 5.3502 -0.1682 -0.7420 42 1 3.8071 0.7076 -0.8839 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572615243.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:31 Heat of formation + Delta-G solvation = -106.992694 kcal Electronic energy + Delta-G solvation = -25204.423232 eV Core-core repulsion = 21341.604955 eV Total energy + Delta-G solvation = -3862.818277 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.25675 -41.16514 -40.04900 -38.96534 -37.00151 -36.13280 -34.82218 -33.33015 -32.50528 -31.70696 -30.29121 -28.23244 -27.06940 -25.43575 -24.84682 -23.02905 -22.48278 -21.40905 -21.17256 -19.71201 -18.63457 -18.45920 -17.71601 -17.28036 -16.80567 -16.62569 -16.51690 -16.30240 -16.14854 -16.08506 -15.77660 -15.15759 -14.99537 -14.70788 -14.59460 -14.33996 -14.30273 -13.51407 -13.26300 -13.16258 -13.11302 -13.06196 -12.94604 -12.90864 -12.81760 -12.54120 -12.41109 -12.28057 -11.68580 -11.51564 -11.42212 -10.76816 -10.61385 -10.54715 -10.23025 -10.06126 -9.20444 -8.23289 -6.34084 -0.44942 -0.08923 0.48796 1.14966 1.34375 1.43939 1.44213 1.55481 2.00799 2.38419 2.55000 2.68821 3.04426 3.12068 3.30361 3.71989 3.89962 3.96445 4.14259 4.24929 4.31982 4.38456 4.46163 4.51790 4.56706 4.71266 4.78942 4.81158 4.82348 4.98536 5.04305 5.05815 5.09527 5.18853 5.26481 5.43084 5.53896 5.55893 5.73367 5.79187 5.87649 6.13188 6.27576 6.46751 6.59663 6.78517 6.84922 7.35549 8.88581 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024063 B = 0.002216 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.336570 B =12633.360510 C =13604.712751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.395 3.605 3 O -0.480 6.480 4 C -0.174 4.174 5 C -0.081 4.081 6 C 0.107 3.893 7 N -0.630 5.630 8 C 0.517 3.483 9 O -0.515 6.515 10 C 0.505 3.495 11 O -0.544 6.544 12 N -0.685 5.685 13 C 0.138 3.862 14 C 0.018 3.982 15 C -0.544 4.544 16 H 0.065 0.935 17 C 0.005 3.995 18 N -0.928 5.928 19 Si 0.966 3.034 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.263 1.263 23 C -0.093 4.093 24 C -0.110 4.110 25 C -0.048 4.048 26 C -0.116 4.116 27 H 0.105 0.895 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.140 0.860 31 H 0.434 0.566 32 H 0.416 0.584 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.008 0.992 36 H 0.009 0.991 37 H 0.265 0.735 38 H 0.164 0.836 39 H 0.166 0.834 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.973 11.836 -10.589 26.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.276 3.724 3 O -0.359 6.359 4 C -0.176 4.176 5 C -0.101 4.101 6 C 0.014 3.986 7 N -0.278 5.278 8 C 0.299 3.701 9 O -0.390 6.390 10 C 0.285 3.715 11 O -0.422 6.422 12 N -0.336 5.336 13 C 0.015 3.985 14 C -0.020 4.020 15 C -0.582 4.582 16 H 0.084 0.916 17 C -0.194 4.194 18 N -0.567 5.567 19 Si 0.791 3.209 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.187 1.187 23 C -0.112 4.112 24 C -0.128 4.128 25 C -0.049 4.049 26 C -0.172 4.172 27 H 0.124 0.876 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.158 0.842 31 H 0.274 0.726 32 H 0.252 0.748 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.026 0.974 36 H 0.027 0.973 37 H 0.074 0.926 38 H 0.182 0.818 39 H 0.184 0.816 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 21.068 12.379 -10.477 26.587 hybrid contribution -1.064 -0.805 0.439 1.405 sum 20.004 11.575 -10.038 25.197 Atomic orbital electron populations 1.22259 0.92014 1.05676 1.05685 1.22773 0.92687 0.87111 0.69800 1.90481 1.72216 1.35147 1.38066 1.20315 0.94642 0.94351 1.08288 1.21492 1.01070 0.90555 0.97026 1.17791 0.92096 0.84872 1.03834 1.43012 1.23474 1.11984 1.49338 1.20127 0.82179 0.88257 0.79579 1.90780 1.69158 1.37402 1.41675 1.19995 0.82456 0.88145 0.80869 1.90751 1.70078 1.37539 1.43852 1.46047 1.23023 1.17539 1.46983 1.21504 0.92044 0.84389 1.00554 1.19181 0.91633 0.96955 0.94195 1.21454 1.08206 0.99023 1.29522 0.91649 1.25902 0.98758 0.99929 0.94822 1.70068 1.24334 1.31193 1.31146 0.85428 0.77447 0.79114 0.78957 1.19859 1.20886 1.18728 1.21497 0.90784 1.00828 0.98128 1.21220 1.01639 0.89915 1.00021 1.20529 0.92276 0.97330 0.94770 1.21013 0.99934 0.93360 1.02875 0.87641 0.88459 0.88861 0.84226 0.72576 0.74755 0.91788 0.91832 0.97396 0.97289 0.92606 0.81829 0.81617 0.91121 0.89677 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.19 9.63 71.24 0.69 -2.50 16 2 C 0.40 8.22 7.16 28.04 0.20 8.42 16 3 O -0.48 -11.93 14.10 -2.95 -0.04 -11.98 16 4 C -0.17 -3.53 5.87 -20.17 -0.12 -3.64 16 5 C -0.08 -1.69 7.93 22.72 0.18 -1.51 16 6 C 0.11 1.99 6.30 38.16 0.24 2.24 16 7 N -0.63 -12.23 5.33 -304.94 -1.62 -13.86 16 8 C 0.52 13.24 7.62 87.24 0.66 13.90 16 9 O -0.52 -14.87 14.08 -3.32 -0.05 -14.91 16 10 C 0.51 15.29 7.89 87.24 0.69 15.98 16 11 O -0.54 -18.15 16.49 -3.30 -0.05 -18.20 16 12 N -0.68 -22.75 5.55 -464.50 -2.58 -25.32 16 13 C 0.14 5.41 5.61 86.38 0.48 5.90 16 14 C 0.02 0.87 5.09 29.85 0.15 1.02 16 15 C -0.54 -29.15 9.11 25.60 0.23 -28.92 16 16 H 0.07 3.36 7.74 -2.91 -0.02 3.34 16 17 C 0.00 0.25 5.46 84.66 0.46 0.72 16 18 N -0.93 -53.81 13.29 21.45 0.28 -53.53 16 19 Si 0.97 42.52 29.54 68.60 2.03 44.55 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 22 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 23 C -0.09 -1.20 9.95 22.47 0.22 -0.98 16 24 C -0.11 -1.37 9.65 22.20 0.21 -1.16 16 25 C -0.05 -0.83 5.92 -19.54 -0.12 -0.94 16 26 C -0.12 -1.79 8.68 71.23 0.62 -1.18 16 27 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.09 1.34 6.73 -2.39 -0.02 1.33 16 30 H 0.14 3.09 4.79 -2.91 -0.01 3.07 16 31 H 0.43 6.69 8.29 -92.71 -0.77 5.92 16 32 H 0.42 13.19 7.94 -92.70 -0.74 12.45 16 33 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 35 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 38 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 39 H 0.17 1.01 8.05 -2.91 -0.02 0.99 16 40 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.08 0.86 8.03 -2.39 -0.02 0.84 16 42 H 0.07 1.40 5.93 -2.39 -0.01 1.38 16 Total: -1.00 -67.14 362.41 2.36 -64.79 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -0.42 Total: 21.13 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 4.81 Total: 7.33 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -3.92 Total: -92.71 kcal Atomic # 8 Polarization: -44.95 SS G_CDS: -0.14 Total: -45.09 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -67.14 2.36 -64.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572615243.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.206 kcal (2) G-P(sol) polarization free energy of solvation -67.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds