Wall clock time and date at job start Tue Mar 31 2020 12:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21247 * 119.99794 * 2 1 4 4 C 1.47188 * 120.00053 * 179.97438 * 2 1 3 5 5 C 1.39760 * 120.13569 * 2.70135 * 4 2 1 6 6 C 1.38583 * 119.74434 * 180.02562 * 5 4 2 7 7 N 1.39764 * 119.99116 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00273 * 326.16492 * 7 6 5 9 9 O 1.21382 * 119.99528 * 354.60562 * 8 7 6 10 10 C 1.49353 * 120.00211 * 174.60315 * 8 7 6 11 11 O 1.21361 * 120.00036 * 3.42304 * 10 8 7 12 12 N 1.34773 * 119.99909 * 183.41515 * 10 8 7 13 13 C 1.46503 * 120.00060 * 1.22846 * 12 10 8 14 14 C 1.46500 * 120.00094 * 181.22199 * 12 10 8 15 15 C 1.50697 * 109.47011 * 89.99992 * 14 12 10 16 16 H 1.08000 * 120.00167 * 0.02562 * 15 14 12 17 17 C 1.37881 * 120.00131 * 180.02562 * 15 14 12 18 18 N 1.31516 * 119.99687 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00151 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47236 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47483 * 119.99770 * 19 17 15 22 22 H 1.48503 * 109.47358 * 240.00059 * 19 17 15 23 23 C 1.39085 * 120.01838 * 359.97438 * 6 5 4 24 24 C 1.38241 * 120.27075 * 0.30026 * 23 6 5 25 25 C 1.37963 * 120.25813 * 359.44460 * 24 23 6 26 26 C 1.50700 * 120.01096 * 180.25636 * 25 24 23 27 27 H 1.09005 * 109.46599 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46919 * 299.99533 * 1 2 3 29 29 H 1.08994 * 109.47254 * 60.00159 * 1 2 3 30 30 H 1.08003 * 120.12616 * 0.04373 * 5 4 2 31 31 H 0.97001 * 119.99622 * 146.16525 * 7 6 5 32 32 H 1.09001 * 109.47342 * 83.23891 * 13 12 10 33 33 H 1.09003 * 109.46961 * 203.24341 * 13 12 10 34 34 H 1.09000 * 109.46938 * 323.24093 * 13 12 10 35 35 H 1.08996 * 109.47415 * 210.00598 * 14 12 10 36 36 H 1.09003 * 109.47219 * 330.00593 * 14 12 10 37 37 H 0.96998 * 120.00016 * 180.02562 * 18 17 15 38 38 H 1.08003 * 119.86527 * 180.02562 * 23 6 5 39 39 H 1.08007 * 119.87135 * 179.70093 * 24 23 6 40 40 H 1.09000 * 109.46676 * 262.38721 * 26 25 24 41 41 H 1.08999 * 109.47286 * 22.38608 * 26 25 24 42 42 H 1.08996 * 109.47154 * 142.38955 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2430 -1.2747 0.0006 5 6 1.5482 -2.4860 -0.0559 6 6 2.2493 -3.6815 -0.0543 7 7 1.5597 -4.8959 -0.1101 8 6 0.3584 -5.0168 0.4887 9 8 -0.0805 -4.1044 1.1583 10 6 -0.4329 -6.2733 0.3283 11 8 0.0323 -7.2087 -0.2893 12 7 -1.6636 -6.3683 0.8694 13 6 -2.2360 -5.2297 1.5920 14 6 -2.4290 -7.6102 0.7351 15 6 -2.1223 -8.5177 1.8985 16 1 -1.4271 -8.2008 2.6619 17 6 -2.7292 -9.7525 1.9883 18 7 -3.5761 -10.1381 1.0590 19 14 -2.3496 -10.8769 3.4308 20 1 -1.3736 -10.2135 4.3322 21 1 -3.6002 -11.1611 4.1795 22 1 -1.7736 -12.1500 2.9279 23 6 3.6390 -3.6730 0.0026 24 6 4.3266 -2.4754 0.0642 25 6 3.6404 -1.2786 0.0580 26 6 4.3959 0.0239 0.1195 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 0.4692 -2.4905 -0.1008 31 1 1.9459 -5.6517 -0.5797 32 1 -2.6865 -4.5373 0.8808 33 1 -2.9981 -5.5854 2.2854 34 1 -1.4492 -4.7192 2.1475 35 1 -3.4945 -7.3810 0.7240 36 1 -2.1546 -8.1073 -0.1955 37 1 -4.0033 -11.0066 1.1224 38 1 4.1829 -4.6061 0.0033 39 1 5.4056 -2.4765 0.1131 40 1 4.4142 0.3850 1.1478 41 1 5.4168 -0.1315 -0.2293 42 1 3.9031 0.7601 -0.5154 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573385271.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:37 Heat of formation + Delta-G solvation = -59.179597 kcal Electronic energy + Delta-G solvation = -26110.617426 eV Core-core repulsion = 22249.872480 eV Total energy + Delta-G solvation = -3860.744945 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.11758 -40.13518 -38.71390 -37.75300 -35.77894 -34.60831 -32.64456 -32.56007 -31.59527 -29.50598 -28.18102 -27.10419 -26.06768 -24.51757 -24.14475 -22.49201 -21.33586 -20.23985 -19.57872 -17.79023 -17.25818 -16.70412 -16.32307 -15.97687 -15.90412 -15.38922 -15.29590 -15.22428 -15.01034 -14.45004 -14.31496 -14.04634 -13.81711 -13.58868 -13.15793 -12.58707 -12.49230 -12.43064 -12.33963 -12.22225 -12.18648 -12.13945 -12.11869 -11.65725 -11.34715 -11.03729 -10.79946 -10.58992 -10.44652 -10.26623 -9.71654 -9.66374 -9.29140 -8.88353 -8.54007 -8.29204 -7.86759 -6.15284 -4.20897 0.38464 0.95847 1.75743 2.19122 2.56644 3.24498 3.32076 3.36244 3.43603 3.65609 3.79911 3.94258 4.35851 4.46693 4.67045 4.67818 4.71440 4.90256 5.06181 5.13180 5.19829 5.21013 5.21695 5.44131 5.55512 5.63799 5.75005 5.77644 5.88768 5.93261 6.01411 6.03022 6.10404 6.33345 6.45449 6.65559 6.75465 7.05847 7.20726 7.29800 7.31129 7.74123 7.82690 8.07027 8.10882 8.52992 8.84048 9.44534 10.93001 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024208 B = 0.002773 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.383159 B =10096.732008 C =10701.846498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.400 3.600 3 O -0.458 6.458 4 C -0.160 4.160 5 C -0.071 4.071 6 C 0.132 3.868 7 N -0.652 5.652 8 C 0.511 3.489 9 O -0.502 6.502 10 C 0.494 3.506 11 O -0.524 6.524 12 N -0.559 5.559 13 C 0.064 3.936 14 C 0.241 3.759 15 C -0.531 4.531 16 H 0.060 0.940 17 C 0.063 3.937 18 N -0.893 5.893 19 Si 0.901 3.099 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.105 4.105 24 C -0.116 4.116 25 C -0.041 4.041 26 C -0.125 4.125 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.148 0.852 31 H 0.424 0.576 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.041 0.959 36 H 0.049 0.951 37 H 0.265 0.735 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.791 18.012 -3.262 21.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.280 3.720 3 O -0.335 6.335 4 C -0.162 4.162 5 C -0.091 4.091 6 C 0.038 3.962 7 N -0.299 5.299 8 C 0.295 3.705 9 O -0.377 6.377 10 C 0.274 3.726 11 O -0.401 6.401 12 N -0.290 5.290 13 C -0.079 4.079 14 C 0.122 3.878 15 C -0.570 4.570 16 H 0.078 0.922 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.728 3.272 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.125 4.125 24 C -0.135 4.135 25 C -0.042 4.042 26 C -0.181 4.181 27 H 0.106 0.894 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.166 0.834 31 H 0.263 0.737 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.787 18.492 -3.155 22.155 hybrid contribution 0.212 -1.390 0.652 1.550 sum 12.000 17.102 -2.503 21.041 Atomic orbital electron populations 1.22266 0.93599 1.05394 1.04867 1.22441 0.91709 0.87373 0.70461 1.90455 1.71368 1.34562 1.37124 1.20193 0.93766 0.94478 1.07731 1.21522 1.01159 0.89848 0.96611 1.17627 0.91127 0.85533 1.01954 1.43314 1.19504 1.13262 1.53840 1.21065 0.81556 0.89262 0.78627 1.90627 1.68761 1.41474 1.36829 1.19459 0.83500 0.86868 0.82737 1.90749 1.69038 1.38787 1.41565 1.48134 1.14578 1.16703 1.49607 1.22293 1.00681 0.88048 0.96888 1.19549 0.90564 0.78785 0.98878 1.21414 1.26463 1.01139 1.07967 0.92176 1.24935 0.94827 0.97634 0.96586 1.69935 1.28553 1.21028 1.33599 0.86394 0.78176 0.80529 0.82062 1.19719 1.20830 1.20772 1.21216 0.92244 0.99311 0.99728 1.20857 1.00109 0.90910 1.01587 1.20213 0.92450 0.96109 0.95421 1.21136 0.98900 0.94547 1.03511 0.89414 0.88584 0.88787 0.83425 0.73725 0.93402 0.90991 0.88547 0.94096 0.93331 0.92577 0.84805 0.84905 0.90914 0.92209 0.88600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.68 10.19 36.01 0.37 -1.31 16 2 C 0.40 4.31 7.20 -30.67 -0.22 4.09 16 3 O -0.46 -5.74 13.98 5.59 0.08 -5.66 16 4 C -0.16 -1.79 5.87 -105.09 -0.62 -2.41 16 5 C -0.07 -0.84 8.04 -38.89 -0.31 -1.15 16 6 C 0.13 1.55 6.26 -83.80 -0.52 1.03 16 7 N -0.65 -8.45 5.32 -10.33 -0.05 -8.50 16 8 C 0.51 8.15 7.52 -11.63 -0.09 8.06 16 9 O -0.50 -8.04 10.82 5.47 0.06 -7.98 16 10 C 0.49 9.84 7.74 -11.63 -0.09 9.75 16 11 O -0.52 -11.79 16.05 5.49 0.09 -11.70 16 12 N -0.56 -11.70 2.86 -183.50 -0.52 -12.22 16 13 C 0.06 1.08 9.58 59.85 0.57 1.66 16 14 C 0.24 6.06 5.14 -5.20 -0.03 6.03 16 15 C -0.53 -14.61 9.39 -34.44 -0.32 -14.93 16 16 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -25.68 13.29 55.43 0.74 -24.95 16 19 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 23 C -0.10 -1.01 9.96 -39.27 -0.39 -1.40 16 24 C -0.12 -1.05 9.65 -39.68 -0.38 -1.43 16 25 C -0.04 -0.42 5.92 -104.12 -0.62 -1.04 16 26 C -0.12 -1.15 8.83 36.01 0.32 -0.83 16 27 H 0.09 0.72 5.61 -51.93 -0.29 0.43 16 28 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.15 1.74 4.33 -52.48 -0.23 1.52 16 31 H 0.42 4.95 8.29 -40.82 -0.34 4.62 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.22 8.02 -51.93 -0.42 0.80 16 34 H 0.10 1.59 5.30 -51.98 -0.28 1.32 16 35 H 0.04 1.04 8.07 -51.93 -0.42 0.62 16 36 H 0.05 1.35 7.40 -51.93 -0.38 0.96 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 39 H 0.13 0.87 8.05 -52.48 -0.42 0.45 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.43 8.03 -51.93 -0.42 0.01 16 42 H 0.10 1.00 5.68 -51.93 -0.30 0.70 16 LS Contribution 355.45 15.07 5.36 5.36 Total: -1.00 -31.98 355.45 -6.86 -38.84 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -5.15 Total: 2.80 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -2.43 Total: 7.75 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 0.16 Total: -45.67 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: 0.23 Total: -25.34 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.98 -6.86 -38.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573385271.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.342 kcal (2) G-P(sol) polarization free energy of solvation -31.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds