Wall clock time and date at job start Tue Mar 31 2020 12:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21247 * 119.99794 * 2 1 4 4 C 1.47188 * 120.00053 * 179.97438 * 2 1 3 5 5 C 1.39760 * 120.13569 * 2.70135 * 4 2 1 6 6 C 1.38583 * 119.74434 * 180.02562 * 5 4 2 7 7 N 1.39764 * 119.99116 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00273 * 326.16492 * 7 6 5 9 9 O 1.21382 * 119.99528 * 354.60562 * 8 7 6 10 10 C 1.49353 * 120.00211 * 174.60315 * 8 7 6 11 11 O 1.21361 * 120.00036 * 3.42304 * 10 8 7 12 12 N 1.34773 * 119.99909 * 183.41515 * 10 8 7 13 13 C 1.46503 * 120.00060 * 1.22846 * 12 10 8 14 14 C 1.46500 * 120.00094 * 181.22199 * 12 10 8 15 15 C 1.50697 * 109.47011 * 89.99992 * 14 12 10 16 16 H 1.08000 * 120.00167 * 0.02562 * 15 14 12 17 17 C 1.37881 * 120.00131 * 180.02562 * 15 14 12 18 18 N 1.31516 * 119.99687 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00151 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47236 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47483 * 119.99770 * 19 17 15 22 22 H 1.48503 * 109.47358 * 240.00059 * 19 17 15 23 23 C 1.39085 * 120.01838 * 359.97438 * 6 5 4 24 24 C 1.38241 * 120.27075 * 0.30026 * 23 6 5 25 25 C 1.37963 * 120.25813 * 359.44460 * 24 23 6 26 26 C 1.50700 * 120.01096 * 180.25636 * 25 24 23 27 27 H 1.09005 * 109.46599 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46919 * 299.99533 * 1 2 3 29 29 H 1.08994 * 109.47254 * 60.00159 * 1 2 3 30 30 H 1.08003 * 120.12616 * 0.04373 * 5 4 2 31 31 H 0.97001 * 119.99622 * 146.16525 * 7 6 5 32 32 H 1.09001 * 109.47342 * 83.23891 * 13 12 10 33 33 H 1.09003 * 109.46961 * 203.24341 * 13 12 10 34 34 H 1.09000 * 109.46938 * 323.24093 * 13 12 10 35 35 H 1.08996 * 109.47415 * 210.00598 * 14 12 10 36 36 H 1.09003 * 109.47219 * 330.00593 * 14 12 10 37 37 H 0.96998 * 120.00016 * 180.02562 * 18 17 15 38 38 H 1.08003 * 119.86527 * 180.02562 * 23 6 5 39 39 H 1.08007 * 119.87135 * 179.70093 * 24 23 6 40 40 H 1.09000 * 109.46676 * 262.38721 * 26 25 24 41 41 H 1.08999 * 109.47286 * 22.38608 * 26 25 24 42 42 H 1.08996 * 109.47154 * 142.38955 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2430 -1.2747 0.0006 5 6 1.5482 -2.4860 -0.0559 6 6 2.2493 -3.6815 -0.0543 7 7 1.5597 -4.8959 -0.1101 8 6 0.3584 -5.0168 0.4887 9 8 -0.0805 -4.1044 1.1583 10 6 -0.4329 -6.2733 0.3283 11 8 0.0323 -7.2087 -0.2893 12 7 -1.6636 -6.3683 0.8694 13 6 -2.2360 -5.2297 1.5920 14 6 -2.4290 -7.6102 0.7351 15 6 -2.1223 -8.5177 1.8985 16 1 -1.4271 -8.2008 2.6619 17 6 -2.7292 -9.7525 1.9883 18 7 -3.5761 -10.1381 1.0590 19 14 -2.3496 -10.8769 3.4308 20 1 -1.3736 -10.2135 4.3322 21 1 -3.6002 -11.1611 4.1795 22 1 -1.7736 -12.1500 2.9279 23 6 3.6390 -3.6730 0.0026 24 6 4.3266 -2.4754 0.0642 25 6 3.6404 -1.2786 0.0580 26 6 4.3959 0.0239 0.1195 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 0.4692 -2.4905 -0.1008 31 1 1.9459 -5.6517 -0.5797 32 1 -2.6865 -4.5373 0.8808 33 1 -2.9981 -5.5854 2.2854 34 1 -1.4492 -4.7192 2.1475 35 1 -3.4945 -7.3810 0.7240 36 1 -2.1546 -8.1073 -0.1955 37 1 -4.0033 -11.0066 1.1224 38 1 4.1829 -4.6061 0.0033 39 1 5.4056 -2.4765 0.1131 40 1 4.4142 0.3850 1.1478 41 1 5.4168 -0.1315 -0.2293 42 1 3.9031 0.7601 -0.5154 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573385271.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:36 Heat of formation + Delta-G solvation = -79.149358 kcal Electronic energy + Delta-G solvation = -26111.483380 eV Core-core repulsion = 22249.872480 eV Total energy + Delta-G solvation = -3861.610899 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.26162 -41.16147 -39.93819 -38.91210 -37.19060 -35.96115 -34.66726 -33.35559 -32.46672 -30.29439 -30.03561 -28.20115 -27.40010 -26.05362 -25.12805 -23.89132 -22.34782 -21.22494 -20.81823 -18.93970 -18.75949 -18.49368 -17.59471 -17.30352 -16.88877 -16.68193 -16.46134 -16.19794 -16.14051 -15.96053 -15.45613 -15.00403 -14.89386 -14.68203 -14.41489 -14.19130 -13.87021 -13.64720 -13.38596 -13.33090 -13.13066 -13.02069 -12.96597 -12.91633 -12.86119 -12.66917 -12.44380 -12.25329 -12.14610 -11.70531 -11.42510 -10.66597 -10.46994 -10.38662 -10.04142 -9.61407 -9.17887 -8.25813 -6.40400 -0.43652 -0.02748 0.55740 1.25440 1.37384 1.38769 1.40509 1.52603 2.11478 2.36395 2.56540 2.70279 3.04656 3.06411 3.27038 3.72397 3.90882 3.95444 4.15629 4.27983 4.32010 4.47185 4.51438 4.60334 4.69194 4.73172 4.80613 4.83799 4.86699 4.98268 5.04426 5.06972 5.14477 5.16145 5.26646 5.30729 5.43599 5.56537 5.68427 5.81709 5.93546 5.98454 6.37886 6.50545 6.63838 6.69524 6.97206 7.30418 8.82049 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024208 B = 0.002773 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.383159 B =10096.732008 C =10701.846498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.398 3.602 3 O -0.481 6.481 4 C -0.175 4.175 5 C -0.077 4.077 6 C 0.108 3.892 7 N -0.636 5.636 8 C 0.522 3.478 9 O -0.503 6.503 10 C 0.488 3.512 11 O -0.557 6.557 12 N -0.570 5.570 13 C 0.067 3.933 14 C 0.254 3.746 15 C -0.547 4.547 16 H 0.054 0.946 17 C 0.013 3.987 18 N -0.924 5.924 19 Si 0.968 3.032 20 H -0.268 1.268 21 H -0.271 1.271 22 H -0.279 1.279 23 C -0.095 4.095 24 C -0.111 4.111 25 C -0.047 4.047 26 C -0.122 4.122 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.144 0.856 31 H 0.430 0.570 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.034 0.966 36 H 0.014 0.986 37 H 0.269 0.731 38 H 0.158 0.842 39 H 0.165 0.835 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.450 18.734 -2.394 23.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.280 3.720 3 O -0.360 6.360 4 C -0.176 4.176 5 C -0.097 4.097 6 C 0.015 3.985 7 N -0.283 5.283 8 C 0.305 3.695 9 O -0.379 6.379 10 C 0.270 3.730 11 O -0.437 6.437 12 N -0.300 5.300 13 C -0.075 4.075 14 C 0.134 3.866 15 C -0.586 4.586 16 H 0.072 0.928 17 C -0.187 4.187 18 N -0.564 5.564 19 Si 0.792 3.208 20 H -0.193 1.193 21 H -0.196 1.196 22 H -0.204 1.204 23 C -0.115 4.115 24 C -0.129 4.129 25 C -0.048 4.048 26 C -0.178 4.178 27 H 0.106 0.894 28 H 0.123 0.877 29 H 0.126 0.874 30 H 0.161 0.839 31 H 0.270 0.730 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.123 0.877 35 H 0.052 0.948 36 H 0.032 0.968 37 H 0.078 0.922 38 H 0.176 0.824 39 H 0.182 0.818 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 13.466 19.256 -2.291 23.609 hybrid contribution -0.229 -1.538 0.319 1.587 sum 13.237 17.719 -1.972 22.205 Atomic orbital electron populations 1.22279 0.91851 1.05732 1.05939 1.22758 0.92755 0.86953 0.69563 1.90453 1.71987 1.35120 1.38418 1.20331 0.94465 0.94416 1.08436 1.21523 1.01121 0.90186 0.96879 1.17812 0.92047 0.84639 1.04019 1.43101 1.18272 1.14098 1.52813 1.20085 0.82347 0.87533 0.79536 1.90623 1.69122 1.40810 1.37306 1.20132 0.83234 0.88060 0.81561 1.90717 1.69736 1.40513 1.42755 1.48107 1.15102 1.16393 1.50427 1.22443 1.00876 0.86980 0.97198 1.19057 0.90585 0.80322 0.96630 1.21660 1.26437 1.02043 1.08424 0.92794 1.25806 0.94528 0.99111 0.99264 1.70036 1.29348 1.21676 1.35309 0.85359 0.78393 0.78263 0.78755 1.19258 1.19577 1.20442 1.21503 0.91298 1.00724 0.97998 1.21205 1.01630 0.89931 1.00147 1.20537 0.92361 0.97230 0.94637 1.21108 0.99896 0.93607 1.03168 0.89404 0.87683 0.87404 0.83875 0.73033 0.91108 0.91256 0.87655 0.94805 0.96807 0.92194 0.82413 0.81782 0.91079 0.89865 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.10 10.19 71.24 0.73 -2.37 16 2 C 0.40 8.26 7.20 28.04 0.20 8.47 16 3 O -0.48 -11.81 13.98 -2.93 -0.04 -11.85 16 4 C -0.17 -3.70 5.87 -20.17 -0.12 -3.82 16 5 C -0.08 -1.72 8.04 22.72 0.18 -1.54 16 6 C 0.11 2.35 6.26 38.16 0.24 2.59 16 7 N -0.64 -15.74 5.32 -304.94 -1.62 -17.36 16 8 C 0.52 16.30 7.52 87.24 0.66 16.96 16 9 O -0.50 -15.53 10.82 -3.35 -0.04 -15.56 16 10 C 0.49 19.65 7.74 87.24 0.67 20.32 16 11 O -0.56 -25.72 16.05 -3.28 -0.05 -25.78 16 12 N -0.57 -24.17 2.86 -852.84 -2.44 -26.61 16 13 C 0.07 2.22 9.58 127.77 1.22 3.44 16 14 C 0.25 13.23 5.14 85.63 0.44 13.67 16 15 C -0.55 -30.59 9.39 25.60 0.24 -30.35 16 16 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 17 C 0.01 0.70 5.46 84.66 0.46 1.16 16 18 N -0.92 -53.94 13.29 21.45 0.28 -53.66 16 19 Si 0.97 43.59 29.54 68.60 2.03 45.62 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 23 C -0.10 -1.57 9.96 22.47 0.22 -1.35 16 24 C -0.11 -1.65 9.65 22.20 0.21 -1.44 16 25 C -0.05 -0.87 5.92 -19.54 -0.12 -0.99 16 26 C -0.12 -2.00 8.83 71.24 0.63 -1.38 16 27 H 0.09 1.36 5.61 -2.38 -0.01 1.34 16 28 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.14 3.26 4.33 -2.91 -0.01 3.25 16 31 H 0.43 9.60 8.29 -92.71 -0.77 8.83 16 32 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.07 2.33 8.02 -2.39 -0.02 2.31 16 34 H 0.11 3.36 5.30 -3.22 -0.02 3.34 16 35 H 0.03 1.78 8.07 -2.39 -0.02 1.76 16 36 H 0.01 0.81 7.40 -2.39 -0.02 0.79 16 37 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 38 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 39 H 0.16 1.41 8.05 -2.91 -0.02 1.39 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.08 0.95 8.03 -2.39 -0.02 0.93 16 42 H 0.08 1.62 5.68 -2.39 -0.01 1.61 16 Total: -1.00 -69.59 355.45 4.30 -65.29 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.30 Total: 16.52 kcal Atomic # 6 Polarization: 17.51 SS G_CDS: 5.88 Total: 23.39 kcal Atomic # 7 Polarization: -93.85 SS G_CDS: -3.77 Total: -97.63 kcal Atomic # 8 Polarization: -53.07 SS G_CDS: -0.13 Total: -53.19 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -69.59 4.30 -65.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573385271.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.859 kcal (2) G-P(sol) polarization free energy of solvation -69.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds