Wall clock time and date at job start Tue Mar 31 2020 12:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00140 * 2 1 4 4 H 1.48497 * 109.46946 * 240.00111 * 3 2 1 5 5 H 1.48499 * 109.46827 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47040 * 119.99923 * 3 2 1 7 7 C 1.37878 * 119.99663 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99439 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00332 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47204 * 180.02562 * 9 7 2 11 11 O 1.42904 * 109.47373 * 179.97438 * 10 9 7 12 12 C 1.35970 * 117.00104 * 180.02562 * 11 10 9 13 13 C 1.38799 * 120.49619 * 359.97411 * 12 11 10 14 14 C 1.38775 * 118.44288 * 180.02562 * 13 12 11 15 15 C 1.38087 * 119.36226 * 0.02562 * 14 13 12 16 16 N 1.31963 * 120.94836 * 359.72249 * 15 14 13 17 17 C 1.32269 * 121.68939 * 0.56431 * 16 15 14 18 18 N 1.39579 * 119.72583 * 179.71400 * 17 16 15 19 19 C 1.34770 * 120.00248 * 359.72834 * 18 17 16 20 20 O 1.21283 * 120.00089 * 359.97438 * 19 18 17 21 21 C 1.50703 * 120.00399 * 180.02562 * 19 18 17 22 22 H 1.08999 * 110.73328 * 303.42793 * 21 19 18 23 23 C 1.54985 * 110.83471 * 179.97438 * 21 19 18 24 24 C 1.54274 * 103.75149 * 204.70107 * 23 21 19 25 25 C 1.51450 * 106.88313 * 23.10193 * 24 23 21 26 26 O 1.20754 * 126.34159 * 180.35057 * 25 24 23 27 27 C 1.51931 * 107.27192 * 0.38889 * 25 24 23 28 28 H 0.97000 * 119.99796 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47148 * 59.99567 * 9 7 2 30 30 H 1.09003 * 109.46850 * 299.99648 * 9 7 2 31 31 H 1.08996 * 109.47428 * 59.99731 * 10 9 7 32 32 H 1.09003 * 109.46925 * 299.99596 * 10 9 7 33 33 H 1.07994 * 120.77924 * 0.02562 * 13 12 11 34 34 H 1.07998 * 120.32367 * 180.02562 * 14 13 12 35 35 H 1.07994 * 119.53146 * 180.02562 * 15 14 13 36 36 H 0.97000 * 119.99925 * 179.72915 * 18 17 16 37 37 H 1.09008 * 110.56675 * 86.13323 * 23 21 19 38 38 H 1.08998 * 110.69509 * 323.33210 * 23 21 19 39 39 H 1.09002 * 109.98436 * 142.47266 * 24 23 21 40 40 H 1.09004 * 109.98830 * 263.73658 * 24 23 21 41 41 H 1.08998 * 110.41946 * 217.44699 * 27 25 24 42 42 H 1.09003 * 110.56163 * 94.98140 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 8 1.5307 -4.8997 0.0024 12 6 2.2713 -6.0400 0.0041 13 6 3.6580 -5.9794 0.0047 14 6 4.3716 -7.1696 0.0059 15 6 3.6876 -8.3692 0.0060 16 7 2.3683 -8.3981 0.0104 17 6 1.6490 -7.2882 0.0038 18 7 0.2554 -7.3667 0.0028 19 6 -0.3518 -8.5698 0.0030 20 8 0.3126 -9.5845 0.0036 21 6 -1.8565 -8.6546 0.0014 22 1 -2.2743 -8.1150 0.8513 23 6 -2.3254 -10.1318 0.0013 24 6 -3.7332 -10.0697 -0.6265 25 6 -3.7901 -8.8028 -1.4545 26 8 -4.7354 -8.4072 -2.0932 27 6 -2.4367 -8.1232 -1.3327 28 1 -0.4850 0.8401 0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8904 31 1 2.8712 -3.6040 0.8922 32 1 2.8725 -3.6048 -0.8878 33 1 4.1695 -5.0283 0.0042 34 1 5.4515 -7.1578 0.0067 35 1 4.2403 -9.2970 0.0073 36 1 -0.2761 -6.5552 0.0020 37 1 -2.3768 -10.5174 1.0196 38 1 -1.6617 -10.7466 -0.6067 39 1 -3.8956 -10.9389 -1.2638 40 1 -4.4897 -10.0364 0.1576 41 1 -2.5571 -7.0407 -1.2912 42 1 -1.7919 -8.4020 -2.1662 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576401833.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:38 Heat of formation + Delta-G solvation = -77.425235 kcal Electronic energy + Delta-G solvation = -25713.876285 eV Core-core repulsion = 21852.340149 eV Total energy + Delta-G solvation = -3861.536136 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.07438 -40.18051 -39.08074 -37.83661 -36.10690 -34.88925 -33.50098 -31.72210 -30.78257 -29.85224 -28.87192 -27.49556 -25.46647 -24.07883 -22.95821 -22.12187 -20.90245 -20.01488 -19.74100 -18.43073 -17.68748 -17.41994 -16.54476 -16.24908 -16.08498 -15.82604 -15.37687 -15.22743 -14.86992 -14.67742 -14.59910 -14.12057 -13.98642 -13.77467 -13.65562 -13.07051 -12.89409 -12.42389 -12.18874 -12.05493 -11.97263 -11.84963 -11.61855 -11.15652 -11.10371 -10.99770 -10.77091 -10.71448 -10.37362 -10.08186 -9.84377 -9.77843 -9.45066 -9.27041 -9.08709 -8.53958 -7.72329 -6.19732 -4.25015 1.14165 1.39674 1.60859 2.57588 2.77828 3.22511 3.27103 3.28337 3.48306 3.76021 3.93241 3.99057 4.29078 4.32184 4.40372 4.64856 4.79039 4.84769 4.90635 4.93989 4.99434 5.08266 5.17099 5.24468 5.30769 5.41624 5.44260 5.53775 5.72220 5.81729 5.86195 5.86637 6.01375 6.13749 6.29321 6.50319 6.56857 7.15683 7.18401 7.30689 7.49630 7.59891 7.81725 7.98264 8.11917 8.27209 8.79892 9.40092 10.91573 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010921 B = 0.003163 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.186369 B = 8850.382922 C =11213.493916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.066 3.934 11 O -0.316 6.316 12 C 0.069 3.931 13 C -0.148 4.148 14 C -0.159 4.159 15 C 0.074 3.926 16 N -0.444 5.444 17 C 0.326 3.674 18 N -0.650 5.650 19 C 0.514 3.486 20 O -0.476 6.476 21 C -0.111 4.111 22 H 0.114 0.886 23 C -0.100 4.100 24 C -0.184 4.184 25 C 0.374 3.626 26 O -0.442 6.442 27 C -0.178 4.178 28 H 0.265 0.735 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.145 0.855 34 H 0.134 0.866 35 H 0.157 0.843 36 H 0.425 0.575 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.292 -18.895 0.605 18.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.568 4.568 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.008 4.008 11 O -0.228 6.228 12 C 0.017 3.983 13 C -0.175 4.175 14 C -0.180 4.180 15 C -0.082 4.082 16 N -0.159 5.159 17 C 0.093 3.907 18 N -0.298 5.298 19 C 0.299 3.701 20 O -0.346 6.346 21 C -0.133 4.133 22 H 0.132 0.868 23 C -0.138 4.138 24 C -0.222 4.222 25 C 0.248 3.752 26 O -0.314 6.314 27 C -0.215 4.215 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.163 0.837 34 H 0.152 0.848 35 H 0.174 0.826 36 H 0.263 0.737 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.210 -20.093 0.272 20.131 hybrid contribution 1.064 2.396 0.095 2.624 sum -0.145 -17.697 0.366 17.701 Atomic orbital electron populations 1.69950 1.06098 1.27236 1.49323 1.24976 0.94914 0.99400 0.94749 0.86543 0.79526 0.82543 0.78757 1.20064 1.21062 1.20062 1.20902 0.93019 0.90138 1.52768 0.92402 1.19118 0.94108 0.88878 0.98883 1.23407 0.97272 0.80257 0.99853 1.86098 1.36276 1.12929 1.87526 1.19609 0.91156 0.87152 1.00387 1.21622 0.92270 1.00389 1.03224 1.21902 1.01235 0.92533 1.02299 1.22410 0.88796 0.97898 0.99141 1.67607 1.07893 1.26904 1.13475 1.17811 0.84865 0.86957 1.01061 1.43495 1.03788 1.10488 1.72025 1.20475 0.89721 0.83144 0.76748 1.90795 1.65664 1.33933 1.44188 1.22238 0.91848 0.99824 0.99376 0.86829 1.22198 0.94519 0.94284 1.02757 1.22715 0.99507 0.98759 1.01210 1.24847 0.87545 0.86237 0.76538 1.90455 1.38112 1.67645 1.35221 1.22932 0.97201 1.03189 0.98227 0.92551 0.95344 0.95360 0.92925 0.92919 0.83718 0.84768 0.82599 0.73743 0.89846 0.89120 0.87985 0.88044 0.87673 0.87098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.33 13.29 55.43 0.74 -24.59 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.53 -13.99 9.11 -34.44 -0.31 -14.30 16 8 H 0.06 1.45 7.74 -52.48 -0.41 1.05 16 9 C 0.03 0.66 5.34 -27.89 -0.15 0.51 16 10 C 0.07 1.27 4.70 37.16 0.17 1.44 16 11 O -0.32 -5.58 9.38 -19.65 -0.18 -5.77 16 12 C 0.07 1.09 6.72 -38.91 -0.26 0.83 16 13 C -0.15 -2.07 9.14 -39.18 -0.36 -2.43 16 14 C -0.16 -1.88 10.10 -39.44 -0.40 -2.28 16 15 C 0.07 0.95 11.17 -17.55 -0.20 0.76 16 16 N -0.44 -6.99 7.88 -12.22 -0.10 -7.08 16 17 C 0.33 5.08 7.45 -154.44 -1.15 3.93 16 18 N -0.65 -8.61 5.39 -11.29 -0.06 -8.67 16 19 C 0.51 6.35 7.10 -10.99 -0.08 6.27 16 20 O -0.48 -7.40 13.97 5.55 0.08 -7.32 16 21 C -0.11 -0.93 3.32 -89.73 -0.30 -1.23 16 22 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 23 C -0.10 -0.72 5.96 -25.02 -0.15 -0.87 16 24 C -0.18 -1.19 6.69 -26.85 -0.18 -1.37 16 25 C 0.37 3.46 7.89 -28.06 -0.22 3.24 16 26 O -0.44 -5.79 17.99 6.00 0.11 -5.68 16 27 C -0.18 -1.48 6.17 -26.28 -0.16 -1.64 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.96 7.70 -51.93 -0.40 0.56 16 32 H 0.05 0.96 7.70 -51.93 -0.40 0.56 16 33 H 0.15 1.88 6.44 -52.49 -0.34 1.54 16 34 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.42 5.00 8.04 -40.82 -0.33 4.67 16 37 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 38 H 0.09 0.77 7.42 -51.93 -0.39 0.38 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.11 0.94 8.03 -51.93 -0.42 0.52 16 LS Contribution 359.58 15.07 5.42 5.42 Total: -1.00 -33.21 359.58 -8.47 -41.68 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.61 Total: 2.10 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -3.84 Total: -5.56 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.58 Total: -40.35 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: 0.00 Total: -18.77 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.21 -8.47 -41.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576401833.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.746 kcal (2) G-P(sol) polarization free energy of solvation -33.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds