Wall clock time and date at job start Tue Mar 31 2020 12:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 O 1.42903 * 109.46726 * 180.02562 * 10 9 7 12 12 C 1.35983 * 116.99692 * 180.02562 * 11 10 9 13 13 C 1.38802 * 120.49585 * 359.72915 * 12 11 10 14 14 C 1.38777 * 118.44136 * 179.71693 * 13 12 11 15 15 C 1.38084 * 119.36049 * 0.57199 * 14 13 12 16 16 N 1.31958 * 120.95033 * 359.68936 * 15 14 13 17 17 C 1.32276 * 121.69495 * 0.02562 * 16 15 14 18 18 N 1.39572 * 119.73133 * 180.02562 * 17 16 15 19 19 C 1.34776 * 119.99867 * 359.97438 * 18 17 16 20 20 O 1.21283 * 120.00013 * 359.97438 * 19 18 17 21 21 C 1.50693 * 120.00053 * 179.97438 * 19 18 17 22 22 H 1.09004 * 110.73929 * 56.56141 * 21 19 18 23 23 C 1.54982 * 110.83764 * 179.97438 * 21 19 18 24 24 C 1.54273 * 103.75576 * 155.29351 * 23 21 19 25 25 C 1.51447 * 106.85106 * 336.88097 * 24 23 21 26 26 O 1.20763 * 126.34249 * 179.62365 * 25 24 23 27 27 C 1.51839 * 107.31538 * 359.63812 * 25 24 23 28 28 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 30 30 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 31 31 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 32 32 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 33 33 H 1.07993 * 120.77747 * 359.96701 * 13 12 11 34 34 H 1.08001 * 120.32239 * 180.25924 * 14 13 12 35 35 H 1.07998 * 119.52676 * 179.70780 * 15 14 13 36 36 H 0.97000 * 119.99708 * 179.97438 * 18 17 16 37 37 H 1.09002 * 110.56729 * 273.86652 * 23 21 19 38 38 H 1.09006 * 110.56765 * 36.57657 * 23 21 19 39 39 H 1.09008 * 109.98398 * 96.22523 * 24 23 21 40 40 H 1.08996 * 109.98671 * 217.48838 * 24 23 21 41 41 H 1.08998 * 110.44490 * 265.05474 * 27 25 24 42 42 H 1.09002 * 110.44454 * 142.53134 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 8 1.5308 -4.8996 0.0020 12 6 2.2715 -6.0400 0.0024 13 6 3.6581 -5.9793 -0.0034 14 6 4.3718 -7.1695 0.0033 15 6 3.6879 -8.3691 0.0033 16 7 2.3686 -8.3981 0.0033 17 6 1.6491 -7.2882 0.0026 18 7 0.2556 -7.3667 0.0031 19 6 -0.3516 -8.5699 0.0037 20 8 0.3130 -9.5845 0.0033 21 6 -1.8561 -8.6547 0.0048 22 1 -2.2737 -8.1157 -0.8456 23 6 -2.3250 -10.1319 0.0047 24 6 -3.7331 -10.0699 0.6321 25 6 -3.7892 -8.8032 1.4603 26 8 -4.7346 -8.4069 2.0988 27 6 -2.4369 -8.1235 1.3389 28 1 -0.4850 0.8400 -0.0004 29 1 0.6241 -2.5575 -0.8880 30 1 0.6247 -2.5564 0.8919 31 1 2.8714 -3.6047 -0.8890 32 1 2.8726 -3.6039 0.8910 33 1 4.1696 -5.0282 -0.0088 34 1 5.4518 -7.1577 0.0033 35 1 4.2406 -9.2969 0.0037 36 1 -0.2759 -6.5552 0.0031 37 1 -2.3761 -10.5174 -1.0136 38 1 -1.6593 -10.7451 0.6121 39 1 -4.4893 -10.0359 -0.1523 40 1 -3.8959 -10.9395 1.2687 41 1 -1.7935 -8.4042 2.1727 42 1 -2.5572 -7.0409 1.2974 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576401834.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:42 Heat of formation + Delta-G solvation = -97.933673 kcal Electronic energy + Delta-G solvation = -25715.055818 eV Core-core repulsion = 21852.630370 eV Total energy + Delta-G solvation = -3862.425448 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.11836 -41.09841 -40.08310 -39.08581 -36.90529 -35.96456 -35.44104 -32.90488 -32.31866 -30.90646 -29.81601 -28.26284 -27.16479 -25.24380 -24.15478 -23.20026 -22.35934 -20.95215 -20.46862 -19.59503 -18.89673 -18.45528 -18.01308 -17.39466 -17.15281 -17.08704 -16.55061 -16.33251 -16.16809 -15.83691 -15.59735 -15.19366 -15.01421 -14.72651 -14.48165 -14.34757 -14.16252 -13.94476 -13.59336 -13.29783 -12.89377 -12.78750 -12.72429 -12.52452 -12.44645 -12.28847 -11.84787 -11.74731 -11.69739 -11.63801 -11.44810 -11.33928 -10.61573 -10.59811 -10.39606 -10.15282 -8.85255 -8.25301 -6.37916 0.09015 0.29396 0.85467 1.42688 1.45111 1.52989 1.60968 1.82234 2.11832 2.44676 2.87884 3.02860 3.10008 3.28542 3.45008 3.65295 3.74525 3.86593 4.01791 4.11821 4.17402 4.26423 4.29645 4.32329 4.33918 4.38195 4.47952 4.67342 4.75220 4.79567 4.96782 4.99967 5.14102 5.14702 5.23352 5.31233 5.31965 5.51085 5.53765 5.73687 6.08200 6.20479 6.33497 6.41828 6.76850 6.93263 7.25646 7.32203 8.86912 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010924 B = 0.003163 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.654751 B = 8851.122904 C =11213.403378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.071 0.929 9 C 0.030 3.970 10 C 0.084 3.916 11 O -0.328 6.328 12 C 0.040 3.960 13 C -0.150 4.150 14 C -0.146 4.146 15 C 0.074 3.926 16 N -0.471 5.471 17 C 0.310 3.690 18 N -0.652 5.652 19 C 0.514 3.486 20 O -0.509 6.509 21 C -0.103 4.103 22 H 0.136 0.864 23 C -0.094 4.094 24 C -0.172 4.172 25 C 0.378 3.622 26 O -0.485 6.485 27 C -0.177 4.177 28 H 0.266 0.734 29 H 0.002 0.998 30 H 0.001 0.999 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.155 0.845 34 H 0.174 0.826 35 H 0.187 0.813 36 H 0.428 0.572 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.122 0.878 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.527 -19.575 -1.126 19.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.089 0.911 9 C -0.007 4.007 10 C 0.010 3.990 11 O -0.242 6.242 12 C -0.010 4.010 13 C -0.177 4.177 14 C -0.166 4.166 15 C -0.083 4.083 16 N -0.186 5.186 17 C 0.078 3.922 18 N -0.300 5.300 19 C 0.301 3.699 20 O -0.381 6.381 21 C -0.124 4.124 22 H 0.154 0.846 23 C -0.132 4.132 24 C -0.209 4.209 25 C 0.255 3.745 26 O -0.361 6.361 27 C -0.215 4.215 28 H 0.075 0.925 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.173 0.827 34 H 0.191 0.809 35 H 0.204 0.796 36 H 0.266 0.734 37 H 0.116 0.884 38 H 0.097 0.903 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.126 0.874 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.621 -20.789 -0.794 20.813 hybrid contribution 0.587 2.480 0.065 2.549 sum 1.208 -18.309 -0.728 18.363 Atomic orbital electron populations 1.70086 1.07880 1.28175 1.50610 1.25944 0.95742 1.03392 0.94315 0.85437 0.78197 0.77702 0.79351 1.18927 1.21086 1.18986 1.21378 0.93861 0.91103 1.52050 0.91129 1.18935 0.94507 0.90954 0.96291 1.22941 0.95586 0.79656 1.00832 1.86024 1.36603 1.13013 1.88518 1.19784 0.92137 0.86332 1.02790 1.21905 0.91569 1.01811 1.02394 1.22273 1.03050 0.91127 1.00189 1.23057 0.88176 0.99705 0.97370 1.67682 1.09389 1.27056 1.14522 1.18037 0.85800 0.86941 1.01396 1.43644 1.03374 1.11108 1.71827 1.21106 0.91087 0.82268 0.75414 1.90767 1.66781 1.34814 1.45761 1.22273 0.88920 1.01213 1.00018 0.84640 1.22185 0.94489 0.93059 1.03458 1.22672 0.99431 0.97489 1.01312 1.25173 0.86809 0.86904 0.75569 1.90449 1.39436 1.68933 1.37281 1.22912 0.96989 1.03327 0.98254 0.92541 0.97952 0.98030 0.91820 0.91890 0.82747 0.80850 0.79632 0.73352 0.88426 0.90345 0.86041 0.86563 0.87355 0.87608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.09 13.29 21.45 0.28 -53.80 16 2 C 0.01 0.27 5.46 84.66 0.46 0.73 16 3 Si 0.97 41.74 29.54 68.60 2.03 43.76 16 4 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 5 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 7 C -0.55 -28.91 9.11 25.60 0.23 -28.68 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.03 1.51 5.34 29.85 0.16 1.67 16 10 C 0.08 3.22 4.70 71.98 0.34 3.56 16 11 O -0.33 -11.79 9.39 -93.35 -0.88 -12.67 16 12 C 0.04 1.27 6.72 22.70 0.15 1.42 16 13 C -0.15 -3.92 9.14 22.53 0.21 -3.71 16 14 C -0.15 -3.01 10.10 22.36 0.23 -2.79 16 15 C 0.07 1.72 11.17 84.64 0.95 2.67 16 16 N -0.47 -14.46 7.88 -192.59 -1.52 -15.98 16 17 C 0.31 9.67 7.45 132.99 0.99 10.66 16 18 N -0.65 -17.56 5.39 -308.03 -1.66 -19.23 16 19 C 0.51 12.68 7.10 87.65 0.62 13.30 16 20 O -0.51 -15.83 13.97 -3.04 -0.04 -15.87 16 21 C -0.10 -1.64 3.32 -10.22 -0.03 -1.67 16 22 H 0.14 1.59 8.14 -2.38 -0.02 1.57 16 23 C -0.09 -1.22 5.97 31.70 0.19 -1.03 16 24 C -0.17 -1.91 6.69 30.52 0.20 -1.70 16 25 C 0.38 6.81 7.88 29.70 0.23 7.04 16 26 O -0.49 -12.86 17.99 -1.46 -0.03 -12.88 16 27 C -0.18 -2.94 6.16 30.86 0.19 -2.75 16 28 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 29 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 30 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.06 2.27 7.69 -2.39 -0.02 2.26 16 32 H 0.06 2.26 7.71 -2.39 -0.02 2.24 16 33 H 0.15 3.66 6.44 -2.91 -0.02 3.64 16 34 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 35 H 0.19 3.08 8.06 -2.91 -0.02 3.05 16 36 H 0.43 10.49 8.04 -92.71 -0.75 9.75 16 37 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.08 1.26 7.41 -2.38 -0.02 1.24 16 39 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.12 1.05 8.14 -2.39 -0.02 1.04 16 41 H 0.11 1.88 8.04 -2.39 -0.02 1.86 16 42 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -73.50 359.56 3.62 -69.88 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.31 Total: 18.07 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 5.12 Total: -1.28 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -2.89 Total: -89.01 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -0.94 Total: -41.42 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.76 kcal Total: -73.50 3.62 -69.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576401834.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.053 kcal (2) G-P(sol) polarization free energy of solvation -73.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds