Wall clock time and date at job start Tue Mar 31 2020 12:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86797 * 120.00021 * 2 1 4 4 H 1.48501 * 109.47149 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47257 * 300.00362 * 3 2 1 6 6 H 1.48507 * 109.47065 * 60.00456 * 3 2 1 7 7 C 1.40027 * 119.99754 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99984 * 189.45539 * 7 2 1 9 9 C 1.41545 * 120.00253 * 9.44674 * 7 2 1 10 10 C 1.41170 * 120.99456 * 26.75498 * 9 7 2 11 11 C 1.37594 * 119.01290 * 180.24184 * 10 9 7 12 12 N 1.32079 * 121.10658 * 359.50018 * 11 10 9 13 13 C 1.32462 * 122.23628 * 0.26049 * 12 11 10 14 14 N 1.39472 * 119.58367 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99492 * 354.75919 * 14 13 12 16 16 O 1.21272 * 120.00306 * 354.92042 * 15 14 13 17 17 C 1.50700 * 119.99553 * 174.92753 * 15 14 13 18 18 H 1.09001 * 110.54305 * 302.15305 * 17 15 14 19 19 O 1.45097 * 110.60281 * 179.14969 * 17 15 14 20 20 C 1.44669 * 109.62362 * 266.18676 * 19 17 15 21 21 C 1.52047 * 105.99711 * 3.42107 * 20 19 17 22 22 H 1.08993 * 110.27149 * 86.96812 * 21 20 19 23 23 C 1.50886 * 119.31339 * 214.47458 * 21 20 19 24 24 O 1.43973 * 106.98343 * 176.20743 * 23 21 20 25 25 C 1.42321 * 117.07150 * 302.97973 * 24 23 21 26 26 C 1.54009 * 112.18632 * 53.10092 * 25 24 23 27 27 C 1.51565 * 106.50474 * 305.89646 * 26 25 24 28 28 H 1.08995 * 110.77174 * 301.66712 * 27 26 25 29 29 C 1.38598 * 120.83853 * 359.97438 * 13 12 11 30 30 H 0.97002 * 119.99863 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.49607 * 359.97438 * 10 9 7 32 32 H 1.08000 * 119.44531 * 179.77765 * 11 10 9 33 33 H 0.96999 * 120.00206 * 174.75820 * 14 13 12 34 34 H 1.08996 * 110.15187 * 244.28437 * 20 19 17 35 35 H 1.09005 * 110.15077 * 122.55301 * 20 19 17 36 36 H 1.08992 * 109.50731 * 56.95602 * 23 21 20 37 37 H 1.09004 * 110.06347 * 295.76002 * 23 21 20 38 38 H 1.08998 * 108.93860 * 292.39772 * 25 24 23 39 39 H 1.09003 * 108.86543 * 173.74333 * 25 24 23 40 40 H 1.08998 * 110.04414 * 186.65102 * 26 25 24 41 41 H 1.08996 * 110.04785 * 65.14297 * 26 25 24 42 42 H 1.08002 * 120.60044 * 180.02562 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3464 0.0006 5 1 1.8827 2.3965 -1.2124 6 1 1.8828 2.3964 1.2126 7 6 2.0076 -1.2127 -0.0005 8 1 3.0766 -1.2192 0.1531 9 6 1.3142 -2.4301 -0.2023 10 6 0.1061 -2.4664 -0.9317 11 6 -0.5366 -3.6715 -1.0988 12 7 -0.0365 -4.7867 -0.5980 13 6 1.0955 -4.8073 0.0895 14 7 1.5729 -6.0167 0.5940 15 6 0.8325 -7.1364 0.4730 16 8 -0.2863 -7.0764 0.0090 17 6 1.3951 -8.4630 0.9144 18 1 2.3211 -8.6817 0.3826 19 8 0.4242 -9.5221 0.7120 20 6 -0.3309 -9.7280 1.9287 21 6 0.1567 -8.6723 2.9082 22 1 -0.4056 -7.7477 2.7777 23 6 0.2284 -9.0053 4.3781 24 8 0.8025 -7.8632 5.0405 25 6 2.0824 -7.4305 4.5930 26 6 2.1169 -7.1930 3.0717 27 6 1.6270 -8.4731 2.4248 28 1 2.2526 -9.3170 2.7154 29 6 1.8117 -3.6421 0.3138 30 1 -0.4850 0.8401 -0.0004 31 1 -0.3098 -1.5611 -1.3487 32 1 -1.4631 -3.7068 -1.6525 33 1 2.4377 -6.0520 1.0320 34 1 -0.1394 -10.7251 2.3252 35 1 -1.3959 -9.5982 1.7362 36 1 0.8632 -9.8794 4.5226 37 1 -0.7713 -9.1993 4.7668 38 1 2.8219 -8.1890 4.8496 39 1 2.3381 -6.5011 5.1020 40 1 3.1360 -6.9782 2.7502 41 1 1.4586 -6.3654 2.8078 42 1 2.7346 -3.6633 0.8745 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577311638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:53 Heat of formation + Delta-G solvation = -75.265774 kcal Electronic energy + Delta-G solvation = -27208.982909 eV Core-core repulsion = 23347.540415 eV Total energy + Delta-G solvation = -3861.442494 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.33154 -39.20719 -38.07813 -37.16668 -34.62254 -33.93413 -33.05335 -32.00819 -30.69394 -29.49094 -28.07096 -26.03857 -25.86067 -23.93090 -22.83084 -21.87055 -21.24603 -20.75432 -19.60940 -17.92128 -17.17420 -16.69488 -16.27418 -16.11300 -15.68256 -15.46323 -15.20256 -15.09550 -14.47113 -14.29767 -14.19154 -13.89045 -13.69615 -13.48249 -13.20017 -12.97722 -12.59461 -12.37904 -12.19823 -11.60310 -11.55682 -11.42095 -11.36948 -11.25595 -11.00696 -10.91760 -10.49647 -10.38823 -10.26033 -9.96182 -9.89306 -9.70654 -9.43064 -9.10278 -8.04194 -7.75024 -7.06383 -6.77571 -4.65572 2.50385 2.72443 3.00862 3.05670 3.11054 3.25625 3.40329 3.48675 3.76616 3.84120 3.84638 4.30437 4.43164 4.67257 4.76203 4.79590 4.96992 4.99055 5.01545 5.16254 5.24665 5.34340 5.36810 5.46188 5.48776 5.59885 5.66049 5.76112 5.85876 5.96097 6.05163 6.49640 6.54272 6.60871 6.75698 6.89224 7.00334 7.11792 7.36969 7.47599 7.75075 7.87308 8.14616 8.43851 8.64790 8.72541 8.80987 9.66103 10.08343 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019315 B = 0.003443 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.297976 B = 8130.957707 C = 8946.282722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.075 3.925 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.455 4.455 8 H 0.081 0.919 9 C 0.145 3.855 10 C -0.220 4.220 11 C 0.102 3.898 12 N -0.553 5.553 13 C 0.347 3.653 14 N -0.660 5.660 15 C 0.484 3.516 16 O -0.460 6.460 17 C 0.073 3.927 18 H 0.122 0.878 19 O -0.352 6.352 20 C 0.067 3.933 21 C -0.171 4.171 22 H 0.097 0.903 23 C 0.085 3.915 24 O -0.385 6.385 25 C 0.069 3.931 26 C -0.160 4.160 27 C -0.123 4.123 28 H 0.099 0.901 29 C -0.301 4.301 30 H 0.282 0.718 31 H 0.132 0.868 32 H 0.124 0.876 33 H 0.404 0.596 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.100 0.900 38 H 0.048 0.952 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.457 -13.576 7.986 16.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.144 4.144 3 Si 0.739 3.261 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.487 4.487 8 H 0.099 0.901 9 C 0.137 3.863 10 C -0.243 4.243 11 C -0.049 4.049 12 N -0.272 5.272 13 C 0.119 3.881 14 N -0.309 5.309 15 C 0.267 3.733 16 O -0.328 6.328 17 C 0.012 3.988 18 H 0.140 0.860 19 O -0.269 6.269 20 C -0.009 4.009 21 C -0.190 4.190 22 H 0.115 0.885 23 C 0.009 3.991 24 O -0.304 6.304 25 C -0.008 4.008 26 C -0.197 4.197 27 C -0.142 4.142 28 H 0.117 0.883 29 C -0.327 4.327 30 H 0.093 0.907 31 H 0.149 0.851 32 H 0.141 0.859 33 H 0.240 0.760 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.118 0.882 38 H 0.066 0.934 39 H 0.117 0.883 40 H 0.104 0.896 41 H 0.111 0.889 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.807 -14.284 7.456 16.557 hybrid contribution 1.434 1.625 0.286 2.186 sum 5.241 -12.659 7.742 15.737 Atomic orbital electron populations 1.69759 1.07582 1.29300 1.35040 1.25963 0.94870 1.01504 0.92017 0.86146 0.80720 0.80518 0.78669 1.18373 1.19621 1.19844 1.19595 0.95704 0.89969 1.43404 0.90118 1.17602 0.90895 0.91498 0.86353 1.22330 0.99551 0.98083 1.04337 1.21922 0.97907 0.88062 0.97000 1.67186 1.12942 1.30461 1.16624 1.18008 0.92152 0.83602 0.94349 1.43701 1.21865 1.06951 1.58424 1.20931 0.86861 0.85238 0.80308 1.90801 1.17474 1.85215 1.39316 1.22581 0.92943 0.87521 0.95794 0.86038 1.89053 1.51198 1.52189 1.34500 1.22608 0.96799 0.97403 0.84092 1.23051 0.96727 1.02168 0.97073 0.88507 1.22102 0.99153 0.88172 0.89723 1.87814 1.34648 1.48105 1.59794 1.22541 0.84624 1.00112 0.93481 1.22355 1.03223 0.97676 0.96485 1.22603 0.97517 1.00329 0.93729 0.88293 1.21216 1.04910 0.92560 1.14029 0.90689 0.85061 0.85894 0.75952 0.90985 0.90187 0.92579 0.88190 0.93397 0.88339 0.89591 0.88936 0.88094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.83 10.71 55.55 0.59 -19.24 16 2 C 0.08 1.81 5.32 -17.34 -0.09 1.72 16 3 Si 0.92 17.91 29.57 -169.99 -5.03 12.88 16 4 H -0.26 -5.01 7.11 56.52 0.40 -4.60 16 5 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.46 -11.57 9.13 -37.65 -0.34 -11.92 16 8 H 0.08 1.95 7.87 -52.48 -0.41 1.53 16 9 C 0.14 3.77 5.60 -106.55 -0.60 3.18 16 10 C -0.22 -5.71 8.77 -38.70 -0.34 -6.05 16 11 C 0.10 2.57 11.15 -17.68 -0.20 2.37 16 12 N -0.55 -14.19 7.89 -12.52 -0.10 -14.29 16 13 C 0.35 8.04 7.40 -154.71 -1.15 6.89 16 14 N -0.66 -11.87 4.05 -11.49 -0.05 -11.91 16 15 C 0.48 8.86 5.94 -10.99 -0.07 8.79 16 16 O -0.46 -10.77 14.86 -13.42 -0.20 -10.96 16 17 C 0.07 0.97 4.00 -27.98 -0.11 0.86 16 18 H 0.12 1.31 8.14 -51.93 -0.42 0.88 16 19 O -0.35 -5.21 10.77 -54.22 -0.58 -5.79 16 20 C 0.07 0.79 7.54 36.67 0.28 1.06 16 21 C -0.17 -1.96 2.21 -90.53 -0.20 -2.16 16 22 H 0.10 1.46 7.57 -51.93 -0.39 1.06 16 23 C 0.08 0.80 6.74 36.10 0.24 1.05 16 24 O -0.38 -4.50 10.64 -35.23 -0.37 -4.88 16 25 C 0.07 0.66 6.84 37.68 0.26 0.92 16 26 C -0.16 -1.62 4.17 -26.93 -0.11 -1.73 16 27 C -0.12 -1.27 2.39 -89.81 -0.22 -1.49 16 28 H 0.10 0.81 8.07 -51.93 -0.42 0.39 16 29 C -0.30 -7.11 9.73 -38.48 -0.37 -7.48 16 30 H 0.28 6.40 8.29 -40.82 -0.34 6.06 16 31 H 0.13 3.46 6.13 -52.49 -0.32 3.14 16 32 H 0.12 2.80 8.06 -52.49 -0.42 2.38 16 33 H 0.40 5.59 6.60 -40.82 -0.27 5.33 16 34 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.42 8.07 -51.93 -0.42 0.00 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.09 0.66 7.65 -51.93 -0.40 0.26 16 41 H 0.09 1.25 6.21 -51.93 -0.32 0.93 16 42 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 338.15 15.07 5.10 5.10 Total: -1.00 -33.06 338.15 -9.13 -42.19 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -5.47 Total: 10.90 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -3.02 Total: -3.99 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.45 Total: -45.44 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -1.16 Total: -21.63 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.06 -9.13 -42.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577311638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.077 kcal (2) G-P(sol) polarization free energy of solvation -33.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds