Wall clock time and date at job start Tue Mar 31 2020 12:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86797 * 120.00021 * 2 1 4 4 H 1.48501 * 109.47149 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47257 * 300.00362 * 3 2 1 6 6 H 1.48507 * 109.47065 * 60.00456 * 3 2 1 7 7 C 1.40027 * 119.99754 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99984 * 189.45539 * 7 2 1 9 9 C 1.41545 * 120.00253 * 9.44674 * 7 2 1 10 10 C 1.41170 * 120.99456 * 26.75498 * 9 7 2 11 11 C 1.37594 * 119.01290 * 180.24184 * 10 9 7 12 12 N 1.32079 * 121.10658 * 359.50018 * 11 10 9 13 13 C 1.32462 * 122.23628 * 0.26049 * 12 11 10 14 14 N 1.39472 * 119.58367 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99492 * 354.75919 * 14 13 12 16 16 O 1.21272 * 120.00306 * 354.92042 * 15 14 13 17 17 C 1.50700 * 119.99553 * 174.92753 * 15 14 13 18 18 H 1.09001 * 110.54305 * 302.15305 * 17 15 14 19 19 O 1.45097 * 110.60281 * 179.14969 * 17 15 14 20 20 C 1.44669 * 109.62362 * 266.18676 * 19 17 15 21 21 C 1.52047 * 105.99711 * 3.42107 * 20 19 17 22 22 H 1.08993 * 110.27149 * 86.96812 * 21 20 19 23 23 C 1.50886 * 119.31339 * 214.47458 * 21 20 19 24 24 O 1.43973 * 106.98343 * 176.20743 * 23 21 20 25 25 C 1.42321 * 117.07150 * 302.97973 * 24 23 21 26 26 C 1.54009 * 112.18632 * 53.10092 * 25 24 23 27 27 C 1.51565 * 106.50474 * 305.89646 * 26 25 24 28 28 H 1.08995 * 110.77174 * 301.66712 * 27 26 25 29 29 C 1.38598 * 120.83853 * 359.97438 * 13 12 11 30 30 H 0.97002 * 119.99863 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.49607 * 359.97438 * 10 9 7 32 32 H 1.08000 * 119.44531 * 179.77765 * 11 10 9 33 33 H 0.96999 * 120.00206 * 174.75820 * 14 13 12 34 34 H 1.08996 * 110.15187 * 244.28437 * 20 19 17 35 35 H 1.09005 * 110.15077 * 122.55301 * 20 19 17 36 36 H 1.08992 * 109.50731 * 56.95602 * 23 21 20 37 37 H 1.09004 * 110.06347 * 295.76002 * 23 21 20 38 38 H 1.08998 * 108.93860 * 292.39772 * 25 24 23 39 39 H 1.09003 * 108.86543 * 173.74333 * 25 24 23 40 40 H 1.08998 * 110.04414 * 186.65102 * 26 25 24 41 41 H 1.08996 * 110.04785 * 65.14297 * 26 25 24 42 42 H 1.08002 * 120.60044 * 180.02562 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3464 0.0006 5 1 1.8827 2.3965 -1.2124 6 1 1.8828 2.3964 1.2126 7 6 2.0076 -1.2127 -0.0005 8 1 3.0766 -1.2192 0.1531 9 6 1.3142 -2.4301 -0.2023 10 6 0.1061 -2.4664 -0.9317 11 6 -0.5366 -3.6715 -1.0988 12 7 -0.0365 -4.7867 -0.5980 13 6 1.0955 -4.8073 0.0895 14 7 1.5729 -6.0167 0.5940 15 6 0.8325 -7.1364 0.4730 16 8 -0.2863 -7.0764 0.0090 17 6 1.3951 -8.4630 0.9144 18 1 2.3211 -8.6817 0.3826 19 8 0.4242 -9.5221 0.7120 20 6 -0.3309 -9.7280 1.9287 21 6 0.1567 -8.6723 2.9082 22 1 -0.4056 -7.7477 2.7777 23 6 0.2284 -9.0053 4.3781 24 8 0.8025 -7.8632 5.0405 25 6 2.0824 -7.4305 4.5930 26 6 2.1169 -7.1930 3.0717 27 6 1.6270 -8.4731 2.4248 28 1 2.2526 -9.3170 2.7154 29 6 1.8117 -3.6421 0.3138 30 1 -0.4850 0.8401 -0.0004 31 1 -0.3098 -1.5611 -1.3487 32 1 -1.4631 -3.7068 -1.6525 33 1 2.4377 -6.0520 1.0320 34 1 -0.1394 -10.7251 2.3252 35 1 -1.3959 -9.5982 1.7362 36 1 0.8632 -9.8794 4.5226 37 1 -0.7713 -9.1993 4.7668 38 1 2.8219 -8.1890 4.8496 39 1 2.3381 -6.5011 5.1020 40 1 3.1360 -6.9782 2.7502 41 1 1.4586 -6.3654 2.8078 42 1 2.7346 -3.6633 0.8745 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577311638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:52 Heat of formation + Delta-G solvation = -97.037281 kcal Electronic energy + Delta-G solvation = -27209.926993 eV Core-core repulsion = 23347.540415 eV Total energy + Delta-G solvation = -3862.386578 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.40974 -40.73797 -39.43521 -38.43229 -36.30957 -35.56112 -34.18286 -32.88932 -32.61760 -30.85498 -29.48977 -27.93742 -26.74737 -24.97908 -23.99772 -23.72628 -22.58999 -21.75978 -21.04536 -19.68379 -18.45084 -17.83294 -17.62895 -17.08670 -17.06797 -16.65467 -16.38194 -16.22310 -16.06239 -15.90817 -15.57019 -15.20012 -15.02072 -14.60916 -14.51638 -14.26075 -14.20690 -13.93455 -13.27921 -13.14548 -12.88945 -12.87477 -12.61856 -12.37788 -12.32733 -12.08371 -11.82995 -11.71628 -11.48336 -11.42009 -11.23390 -11.17609 -10.62027 -10.52807 -9.99158 -9.61056 -8.90340 -8.61333 -6.61012 0.70907 0.93315 1.40661 1.51384 1.56489 1.79646 1.94483 2.19507 2.64981 2.80126 2.82385 2.96046 3.41018 3.56085 3.58062 3.71448 4.00669 4.08132 4.13547 4.17094 4.26727 4.36646 4.39072 4.61910 4.65765 4.67484 4.70852 4.71954 4.78621 4.81004 4.89835 4.97949 5.00433 5.01399 5.21572 5.23405 5.43762 5.57699 5.60614 5.93839 6.10176 6.29810 6.40807 6.57341 6.77461 6.81046 7.25121 7.80064 8.27532 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019315 B = 0.003443 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.297976 B = 8130.957707 C = 8946.282722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.033 3.967 3 Si 0.993 3.007 4 H -0.252 1.252 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.480 4.480 8 H 0.090 0.910 9 C 0.117 3.883 10 C -0.240 4.240 11 C 0.094 3.906 12 N -0.581 5.581 13 C 0.344 3.656 14 N -0.644 5.644 15 C 0.479 3.521 16 O -0.521 6.521 17 C 0.079 3.921 18 H 0.158 0.842 19 O -0.375 6.375 20 C 0.063 3.937 21 C -0.168 4.168 22 H 0.046 0.954 23 C 0.088 3.912 24 O -0.413 6.413 25 C 0.066 3.934 26 C -0.161 4.161 27 C -0.109 4.109 28 H 0.143 0.857 29 C -0.308 4.308 30 H 0.291 0.709 31 H 0.120 0.880 32 H 0.135 0.865 33 H 0.425 0.575 34 H 0.113 0.887 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.118 0.882 41 H 0.050 0.950 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.430 -14.808 9.568 19.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.183 4.183 3 Si 0.813 3.187 4 H -0.175 1.175 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.511 4.511 8 H 0.108 0.892 9 C 0.109 3.891 10 C -0.263 4.263 11 C -0.057 4.057 12 N -0.301 5.301 13 C 0.116 3.884 14 N -0.295 5.295 15 C 0.265 3.735 16 O -0.392 6.392 17 C 0.018 3.982 18 H 0.176 0.824 19 O -0.293 6.293 20 C -0.012 4.012 21 C -0.187 4.187 22 H 0.064 0.936 23 C 0.012 3.988 24 O -0.332 6.332 25 C -0.010 4.010 26 C -0.198 4.198 27 C -0.128 4.128 28 H 0.161 0.839 29 C -0.333 4.333 30 H 0.102 0.898 31 H 0.138 0.862 32 H 0.153 0.847 33 H 0.265 0.735 34 H 0.131 0.869 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.122 0.878 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.136 0.864 41 H 0.069 0.931 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.817 -15.553 9.067 19.251 hybrid contribution 0.438 1.971 -0.181 2.027 sum 7.255 -13.582 8.885 17.778 Atomic orbital electron populations 1.69829 1.09258 1.30839 1.34898 1.26928 0.95604 1.04959 0.90801 0.84984 0.79435 0.75390 0.78856 1.17498 1.19038 1.19139 1.19931 0.96280 0.90618 1.44251 0.89223 1.18023 0.91292 0.92988 0.86837 1.22277 1.00495 0.97844 1.05725 1.22157 0.98423 0.88050 0.97113 1.67286 1.14349 1.30566 1.17893 1.18333 0.91280 0.85541 0.93284 1.43653 1.22669 1.05474 1.57718 1.22086 0.86032 0.86813 0.78539 1.90770 1.20177 1.86235 1.42053 1.22732 0.93166 0.83923 0.98370 0.82441 1.89033 1.51886 1.51969 1.36443 1.22772 0.95661 0.99467 0.83349 1.22950 0.97114 0.99859 0.98781 0.93567 1.22231 1.00309 0.88588 0.87696 1.87778 1.35923 1.49178 1.60360 1.22681 0.84491 1.01277 0.92572 1.22369 1.03972 0.96107 0.97381 1.22684 0.97174 1.01936 0.90989 0.83950 1.21431 1.05829 0.91997 1.14065 0.89849 0.86202 0.84714 0.73501 0.86947 0.92133 0.89136 0.87750 0.90115 0.88418 0.86423 0.93118 0.85514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.04 10.71 21.84 0.23 -41.81 16 2 C 0.03 1.60 5.32 85.29 0.45 2.05 16 3 Si 0.99 36.16 29.57 68.60 2.03 38.18 16 4 H -0.25 -8.76 7.11 99.48 0.71 -8.05 16 5 H -0.27 -9.38 7.11 99.48 0.71 -8.67 16 6 H -0.27 -9.37 7.11 99.48 0.71 -8.66 16 7 C -0.48 -24.63 9.13 23.52 0.21 -24.42 16 8 H 0.09 4.29 7.87 -2.91 -0.02 4.27 16 9 C 0.12 6.26 5.60 -21.11 -0.12 6.14 16 10 C -0.24 -13.06 8.77 22.84 0.20 -12.86 16 11 C 0.09 4.95 11.15 84.50 0.94 5.89 16 12 N -0.58 -31.09 7.89 -193.53 -1.53 -32.61 16 13 C 0.34 16.33 7.40 132.75 0.98 17.31 16 14 N -0.64 -23.08 4.05 -308.67 -1.25 -24.33 16 15 C 0.48 17.67 5.94 87.66 0.52 18.19 16 16 O -0.52 -25.44 14.86 15.15 0.23 -25.22 16 17 C 0.08 1.93 4.00 29.79 0.12 2.05 16 18 H 0.16 2.75 8.14 -2.39 -0.02 2.73 16 19 O -0.38 -10.58 10.77 -130.83 -1.41 -11.99 16 20 C 0.06 1.40 7.54 71.67 0.54 1.94 16 21 C -0.17 -3.65 2.21 -10.74 -0.02 -3.67 16 22 H 0.05 1.47 7.57 -2.39 -0.02 1.45 16 23 C 0.09 1.44 6.74 71.29 0.48 1.92 16 24 O -0.41 -8.87 10.64 -148.98 -1.58 -10.46 16 25 C 0.07 1.06 6.84 72.32 0.49 1.55 16 26 C -0.16 -2.83 4.17 30.46 0.13 -2.71 16 27 C -0.11 -1.90 2.39 -10.27 -0.02 -1.93 16 28 H 0.14 1.41 8.07 -2.39 -0.02 1.39 16 29 C -0.31 -14.71 9.73 22.99 0.22 -14.48 16 30 H 0.29 13.36 8.29 -92.71 -0.77 12.60 16 31 H 0.12 6.67 6.13 -2.91 -0.02 6.66 16 32 H 0.14 6.51 8.06 -2.91 -0.02 6.49 16 33 H 0.42 11.09 6.60 -92.71 -0.61 10.48 16 34 H 0.11 1.58 8.12 -2.39 -0.02 1.56 16 35 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.09 0.90 8.07 -2.39 -0.02 0.88 16 37 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.12 1.30 7.65 -2.39 -0.02 1.28 16 41 H 0.05 1.35 6.21 -2.39 -0.01 1.33 16 42 H 0.13 5.21 8.06 -2.91 -0.02 5.19 16 Total: -1.00 -77.26 338.15 2.30 -74.96 By element: Atomic # 1 Polarization: 35.84 SS G_CDS: 0.45 Total: 36.29 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 5.13 Total: -3.01 kcal Atomic # 7 Polarization: -96.21 SS G_CDS: -2.54 Total: -98.75 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: -2.77 Total: -47.67 kcal Atomic # 14 Polarization: 36.16 SS G_CDS: 2.03 Total: 38.18 kcal Total: -77.26 2.30 -74.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577311638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.074 kcal (2) G-P(sol) polarization free energy of solvation -77.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds