Wall clock time and date at job start Tue Mar 31 2020 12:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86804 * 120.00016 * 2 1 4 4 H 1.48497 * 109.47012 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47112 * 300.00570 * 3 2 1 6 6 H 1.48499 * 109.46875 * 60.00307 * 3 2 1 7 7 C 1.40036 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00353 * 170.14419 * 7 2 1 9 9 C 1.41539 * 119.99769 * 350.14256 * 7 2 1 10 10 C 1.41182 * 120.99791 * 151.66636 * 9 7 2 11 11 C 1.37579 * 119.02110 * 180.02562 * 10 9 7 12 12 N 1.32089 * 121.10569 * 359.74476 * 11 10 9 13 13 C 1.32471 * 122.23006 * 0.52569 * 12 11 10 14 14 N 1.39472 * 119.57578 * 179.74747 * 13 12 11 15 15 C 1.34777 * 120.00221 * 5.09919 * 14 13 12 16 16 O 1.21272 * 119.99778 * 354.98783 * 15 14 13 17 17 C 1.50700 * 120.00104 * 174.98958 * 15 14 13 18 18 H 1.09001 * 110.11833 * 305.21727 * 17 15 14 19 19 O 1.44664 * 110.14708 * 183.54584 * 17 15 14 20 20 C 1.45097 * 109.62732 * 237.40961 * 19 17 15 21 21 C 1.52790 * 103.55717 * 335.32023 * 20 19 17 22 22 H 1.08998 * 110.71949 * 284.67600 * 21 20 19 23 23 C 1.51449 * 117.87069 * 155.85570 * 21 20 19 24 24 O 1.44076 * 106.33802 * 186.30742 * 23 21 20 25 25 C 1.42323 * 117.59328 * 56.92093 * 24 23 21 26 26 C 1.54041 * 112.12547 * 307.21778 * 25 24 23 27 27 C 1.51364 * 106.51705 * 53.71096 * 26 25 24 28 28 H 1.08993 * 110.51011 * 56.53946 * 27 26 25 29 29 C 1.38592 * 120.83846 * 359.47730 * 13 12 11 30 30 H 0.96995 * 119.99898 * 359.97438 * 1 2 3 31 31 H 1.08004 * 120.48459 * 0.04174 * 10 9 7 32 32 H 1.07994 * 119.45382 * 180.02562 * 11 10 9 33 33 H 0.96997 * 119.99382 * 185.09199 * 14 13 12 34 34 H 1.08998 * 110.60517 * 216.79974 * 20 19 17 35 35 H 1.09004 * 110.73902 * 93.90152 * 20 19 17 36 36 H 1.08997 * 110.06778 * 304.49305 * 23 21 20 37 37 H 1.09001 * 110.06270 * 66.04747 * 23 21 20 38 38 H 1.08996 * 108.94625 * 186.53843 * 25 24 23 39 39 H 1.08996 * 108.94616 * 67.90454 * 25 24 23 40 40 H 1.09004 * 110.04406 * 294.46190 * 26 25 24 41 41 H 1.09001 * 110.12539 * 173.00556 * 26 25 24 42 42 H 1.08003 * 120.59704 * 180.27396 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8826 2.3965 -1.2124 6 1 1.8827 2.3964 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0756 -1.2196 -0.1606 9 6 1.3156 -2.4295 0.2088 10 6 1.7906 -3.6400 -0.3410 11 6 1.0855 -4.7990 -0.1124 12 7 -0.0183 -4.7944 0.6132 13 6 -0.5085 -3.6853 1.1466 14 7 -1.6814 -3.7433 1.8991 15 6 -2.2525 -4.9345 2.1661 16 8 -1.7991 -5.9475 1.6773 17 6 -3.4545 -5.0077 3.0722 18 1 -3.2328 -4.5334 4.0282 19 8 -3.8403 -6.3867 3.2777 20 6 -5.2181 -6.5743 2.8634 21 6 -5.8245 -5.1779 2.9933 22 1 -6.0036 -4.9310 4.0397 23 6 -7.0411 -4.8532 2.1517 24 8 -7.3094 -3.4517 2.3510 25 6 -6.2655 -2.5316 2.0521 26 6 -4.9512 -2.8921 2.7700 27 6 -4.6477 -4.3319 2.4147 28 1 -4.5961 -4.4556 1.3331 29 6 0.1324 -2.4691 0.9711 30 1 -0.4850 0.8400 0.0004 31 1 2.6943 -3.6559 -0.9322 32 1 1.4427 -5.7290 -0.5292 33 1 -2.0860 -2.9263 2.2302 34 1 -5.7256 -7.2760 3.5252 35 1 -5.2670 -6.9191 1.8305 36 1 -6.8254 -5.0310 1.0982 37 1 -7.8882 -5.4613 2.4688 38 1 -6.5749 -1.5330 2.3605 39 1 -6.0924 -2.5303 0.9760 40 1 -5.0748 -2.7916 3.8483 41 1 -4.1454 -2.2444 2.4247 42 1 -0.2683 -1.5680 1.4114 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577311639.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:57 Heat of formation + Delta-G solvation = -81.429724 kcal Electronic energy + Delta-G solvation = -26919.899521 eV Core-core repulsion = 23058.189737 eV Total energy + Delta-G solvation = -3861.709783 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.10980 -39.32369 -38.07656 -37.21493 -34.39706 -33.92723 -33.26899 -32.04254 -30.59417 -29.60678 -28.07141 -26.03683 -25.84506 -23.93488 -22.67677 -22.00972 -21.10996 -20.80185 -19.63936 -17.73241 -17.38433 -16.59905 -16.44676 -16.15381 -15.58692 -15.45661 -15.28714 -15.12487 -14.46878 -14.25735 -14.16614 -13.80528 -13.76182 -13.44547 -13.24501 -12.91714 -12.74045 -12.61166 -12.16465 -11.64655 -11.54960 -11.46815 -11.27003 -11.23566 -10.95840 -10.93066 -10.64009 -10.31148 -10.16827 -10.12900 -9.87868 -9.76190 -9.43326 -9.14089 -8.00243 -7.75759 -7.09055 -6.80338 -4.66594 2.48280 2.74458 2.99564 3.04936 3.10171 3.19940 3.36075 3.40881 3.75784 3.82907 3.93695 4.33376 4.43639 4.65254 4.71796 4.84952 4.92211 4.96334 5.02553 5.11041 5.18013 5.35708 5.36169 5.49299 5.52345 5.56292 5.62815 5.69326 5.71943 5.92737 5.98388 6.51953 6.54454 6.65074 6.76129 6.91012 6.95494 7.07394 7.33024 7.41495 7.73537 7.89329 8.15713 8.38475 8.65703 8.71651 8.83132 9.63152 10.06762 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015629 B = 0.003670 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.065926 B = 7628.542477 C = 9092.119928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.076 3.924 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.456 4.456 8 H 0.082 0.918 9 C 0.144 3.856 10 C -0.280 4.280 11 C 0.117 3.883 12 N -0.552 5.552 13 C 0.335 3.665 14 N -0.655 5.655 15 C 0.488 3.512 16 O -0.461 6.461 17 C 0.077 3.923 18 H 0.104 0.896 19 O -0.351 6.351 20 C 0.061 3.939 21 C -0.165 4.165 22 H 0.100 0.900 23 C 0.082 3.918 24 O -0.391 6.391 25 C 0.068 3.932 26 C -0.142 4.142 27 C -0.126 4.126 28 H 0.091 0.909 29 C -0.236 4.236 30 H 0.280 0.720 31 H 0.103 0.897 32 H 0.124 0.876 33 H 0.405 0.595 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.051 0.949 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.522 -1.706 6.137 14.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.141 4.141 3 Si 0.738 3.262 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.136 3.864 10 C -0.304 4.304 11 C -0.037 4.037 12 N -0.271 5.271 13 C 0.110 3.890 14 N -0.303 5.303 15 C 0.271 3.729 16 O -0.329 6.329 17 C 0.016 3.984 18 H 0.121 0.879 19 O -0.269 6.269 20 C -0.016 4.016 21 C -0.184 4.184 22 H 0.118 0.882 23 C 0.006 3.994 24 O -0.310 6.310 25 C -0.009 4.009 26 C -0.180 4.180 27 C -0.145 4.145 28 H 0.109 0.891 29 C -0.261 4.261 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.142 0.858 33 H 0.240 0.760 34 H 0.112 0.888 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.069 0.931 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.928 -3.261 6.101 15.551 hybrid contribution 0.825 2.146 -0.253 2.313 sum -13.103 -1.115 5.847 14.392 Atomic orbital electron populations 1.69748 1.07570 1.29092 1.35972 1.25927 0.94866 1.01387 0.91951 0.86169 0.80886 0.80556 0.78596 1.18345 1.19879 1.19684 1.19605 0.95896 0.89969 1.43339 0.89984 1.17586 0.90178 0.92284 0.86399 1.21962 1.04489 0.94602 1.09299 1.21781 0.90734 0.96568 0.94614 1.67223 1.15602 1.28160 1.16130 1.18200 0.86723 0.90983 0.93046 1.43395 1.25081 1.08784 1.53089 1.20711 0.85076 0.84275 0.82828 1.90795 1.60799 1.33688 1.47618 1.22204 0.92962 0.84490 0.98775 0.87856 1.89083 1.27875 1.25071 1.84837 1.23022 0.82065 0.95608 1.00895 1.23332 0.96504 0.96383 1.02194 0.88173 1.22294 0.96771 0.82115 0.98238 1.87705 1.38919 1.15623 1.88742 1.22578 0.86867 0.92670 0.98785 1.22036 0.98909 0.94797 1.02267 1.22377 0.93513 0.96667 1.01895 0.89059 1.21585 1.01450 0.95354 1.07737 0.90896 0.87870 0.85810 0.75975 0.88848 0.91482 0.92471 0.87964 0.88297 0.93083 0.90030 0.89580 0.85288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.20 10.84 55.55 0.60 -18.60 16 2 C 0.08 1.81 5.30 -17.34 -0.09 1.72 16 3 Si 0.91 17.68 29.57 -169.99 -5.03 12.65 16 4 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 5 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 6 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.46 -11.59 9.13 -37.65 -0.34 -11.93 16 8 H 0.08 2.00 7.87 -52.49 -0.41 1.59 16 9 C 0.14 3.74 5.58 -106.55 -0.59 3.15 16 10 C -0.28 -6.83 9.90 -38.71 -0.38 -7.22 16 11 C 0.12 2.83 11.15 -17.68 -0.20 2.63 16 12 N -0.55 -14.19 7.85 -12.53 -0.10 -14.29 16 13 C 0.34 8.08 7.42 -154.70 -1.15 6.93 16 14 N -0.66 -12.68 5.38 -11.49 -0.06 -12.74 16 15 C 0.49 9.44 7.01 -10.99 -0.08 9.36 16 16 O -0.46 -11.16 14.80 -13.73 -0.20 -11.36 16 17 C 0.08 1.09 3.67 -28.35 -0.10 0.99 16 18 H 0.10 1.25 8.10 -51.93 -0.42 0.83 16 19 O -0.35 -5.39 10.73 -54.53 -0.59 -5.98 16 20 C 0.06 0.66 7.46 37.05 0.28 0.93 16 21 C -0.17 -1.56 2.65 -89.88 -0.24 -1.80 16 22 H 0.10 0.90 8.05 -51.93 -0.42 0.48 16 23 C 0.08 0.71 6.78 36.37 0.25 0.95 16 24 O -0.39 -4.01 10.60 -35.23 -0.37 -4.39 16 25 C 0.07 0.62 6.86 37.70 0.26 0.88 16 26 C -0.14 -1.31 5.92 -27.01 -0.16 -1.47 16 27 C -0.13 -1.42 1.84 -90.28 -0.17 -1.58 16 28 H 0.09 1.18 7.74 -51.93 -0.40 0.78 16 29 C -0.24 -5.88 8.58 -38.48 -0.33 -6.21 16 30 H 0.28 6.08 8.29 -40.82 -0.34 5.74 16 31 H 0.10 2.31 8.06 -52.48 -0.42 1.88 16 32 H 0.12 2.62 8.06 -52.49 -0.42 2.19 16 33 H 0.41 6.35 7.86 -40.82 -0.32 6.03 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.50 8.02 -51.93 -0.42 0.08 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 41 H 0.09 0.78 7.31 -51.93 -0.38 0.40 16 42 H 0.13 3.17 6.27 -52.48 -0.33 2.84 16 LS Contribution 344.74 15.07 5.20 5.20 Total: -1.00 -32.72 344.74 -9.22 -41.94 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -5.61 Total: 10.24 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -3.05 Total: -2.67 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 0.44 Total: -45.64 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -1.16 Total: -21.72 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.72 -9.22 -41.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577311639.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.494 kcal (2) G-P(sol) polarization free energy of solvation -32.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds