Wall clock time and date at job start Tue Mar 31 2020 12:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86804 * 120.00016 * 2 1 4 4 H 1.48497 * 109.47012 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47112 * 300.00570 * 3 2 1 6 6 H 1.48499 * 109.46875 * 60.00307 * 3 2 1 7 7 C 1.40036 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00353 * 170.14419 * 7 2 1 9 9 C 1.41539 * 119.99769 * 350.14256 * 7 2 1 10 10 C 1.41182 * 120.99791 * 151.66636 * 9 7 2 11 11 C 1.37579 * 119.02110 * 180.02562 * 10 9 7 12 12 N 1.32089 * 121.10569 * 359.74476 * 11 10 9 13 13 C 1.32471 * 122.23006 * 0.52569 * 12 11 10 14 14 N 1.39472 * 119.57578 * 179.74747 * 13 12 11 15 15 C 1.34777 * 120.00221 * 5.09919 * 14 13 12 16 16 O 1.21272 * 119.99778 * 354.98783 * 15 14 13 17 17 C 1.50700 * 120.00104 * 174.98958 * 15 14 13 18 18 H 1.09001 * 110.11833 * 305.21727 * 17 15 14 19 19 O 1.44664 * 110.14708 * 183.54584 * 17 15 14 20 20 C 1.45097 * 109.62732 * 237.40961 * 19 17 15 21 21 C 1.52790 * 103.55717 * 335.32023 * 20 19 17 22 22 H 1.08998 * 110.71949 * 284.67600 * 21 20 19 23 23 C 1.51449 * 117.87069 * 155.85570 * 21 20 19 24 24 O 1.44076 * 106.33802 * 186.30742 * 23 21 20 25 25 C 1.42323 * 117.59328 * 56.92093 * 24 23 21 26 26 C 1.54041 * 112.12547 * 307.21778 * 25 24 23 27 27 C 1.51364 * 106.51705 * 53.71096 * 26 25 24 28 28 H 1.08993 * 110.51011 * 56.53946 * 27 26 25 29 29 C 1.38592 * 120.83846 * 359.47730 * 13 12 11 30 30 H 0.96995 * 119.99898 * 359.97438 * 1 2 3 31 31 H 1.08004 * 120.48459 * 0.04174 * 10 9 7 32 32 H 1.07994 * 119.45382 * 180.02562 * 11 10 9 33 33 H 0.96997 * 119.99382 * 185.09199 * 14 13 12 34 34 H 1.08998 * 110.60517 * 216.79974 * 20 19 17 35 35 H 1.09004 * 110.73902 * 93.90152 * 20 19 17 36 36 H 1.08997 * 110.06778 * 304.49305 * 23 21 20 37 37 H 1.09001 * 110.06270 * 66.04747 * 23 21 20 38 38 H 1.08996 * 108.94625 * 186.53843 * 25 24 23 39 39 H 1.08996 * 108.94616 * 67.90454 * 25 24 23 40 40 H 1.09004 * 110.04406 * 294.46190 * 26 25 24 41 41 H 1.09001 * 110.12539 * 173.00556 * 26 25 24 42 42 H 1.08003 * 120.59704 * 180.27396 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8826 2.3965 -1.2124 6 1 1.8827 2.3964 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0756 -1.2196 -0.1606 9 6 1.3156 -2.4295 0.2088 10 6 1.7906 -3.6400 -0.3410 11 6 1.0855 -4.7990 -0.1124 12 7 -0.0183 -4.7944 0.6132 13 6 -0.5085 -3.6853 1.1466 14 7 -1.6814 -3.7433 1.8991 15 6 -2.2525 -4.9345 2.1661 16 8 -1.7991 -5.9475 1.6773 17 6 -3.4545 -5.0077 3.0722 18 1 -3.2328 -4.5334 4.0282 19 8 -3.8403 -6.3867 3.2777 20 6 -5.2181 -6.5743 2.8634 21 6 -5.8245 -5.1779 2.9933 22 1 -6.0036 -4.9310 4.0397 23 6 -7.0411 -4.8532 2.1517 24 8 -7.3094 -3.4517 2.3510 25 6 -6.2655 -2.5316 2.0521 26 6 -4.9512 -2.8921 2.7700 27 6 -4.6477 -4.3319 2.4147 28 1 -4.5961 -4.4556 1.3331 29 6 0.1324 -2.4691 0.9711 30 1 -0.4850 0.8400 0.0004 31 1 2.6943 -3.6559 -0.9322 32 1 1.4427 -5.7290 -0.5292 33 1 -2.0860 -2.9263 2.2302 34 1 -5.7256 -7.2760 3.5252 35 1 -5.2670 -6.9191 1.8305 36 1 -6.8254 -5.0310 1.0982 37 1 -7.8882 -5.4613 2.4688 38 1 -6.5749 -1.5330 2.3605 39 1 -6.0924 -2.5303 0.9760 40 1 -5.0748 -2.7916 3.8483 41 1 -4.1454 -2.2444 2.4247 42 1 -0.2683 -1.5680 1.4114 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577311639.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:56 Heat of formation + Delta-G solvation = -102.425139 kcal Electronic energy + Delta-G solvation = -26920.809950 eV Core-core repulsion = 23058.189737 eV Total energy + Delta-G solvation = -3862.620213 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.17587 -40.86740 -39.50672 -38.43884 -36.15144 -35.60802 -34.30562 -32.88637 -32.46781 -31.02422 -29.48410 -27.92468 -26.68417 -24.99116 -23.88442 -23.75227 -22.55092 -21.63693 -21.18970 -19.51463 -18.75400 -17.93772 -17.36234 -17.10265 -17.04252 -16.79868 -16.32518 -16.23570 -16.08649 -15.89661 -15.68675 -15.24928 -14.77703 -14.64712 -14.43551 -14.33125 -14.19476 -14.08763 -13.47703 -13.17540 -12.89017 -12.72455 -12.48951 -12.37742 -12.18592 -12.13238 -11.87589 -11.70481 -11.58815 -11.53069 -11.20616 -11.10401 -10.66072 -10.60789 -9.93344 -9.61157 -8.92440 -8.61457 -6.59317 0.67821 0.97151 1.42169 1.50656 1.56326 1.73236 1.85475 2.20991 2.64814 2.78325 2.83660 2.94580 3.33733 3.58167 3.67257 3.73614 3.88451 4.02569 4.18071 4.18559 4.23511 4.27278 4.40560 4.58682 4.61857 4.68819 4.71833 4.74407 4.78350 4.82519 4.88689 4.97896 4.99586 5.05492 5.18120 5.22429 5.43951 5.57371 5.60496 5.90359 6.11445 6.25106 6.43685 6.53573 6.76512 6.82675 7.21583 7.78245 8.29351 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015629 B = 0.003670 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.065926 B = 7628.542477 C = 9092.119928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.040 3.960 3 Si 0.989 3.011 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.261 1.261 7 C -0.485 4.485 8 H 0.083 0.917 9 C 0.115 3.885 10 C -0.293 4.293 11 C 0.110 3.890 12 N -0.580 5.580 13 C 0.330 3.670 14 N -0.645 5.645 15 C 0.484 3.516 16 O -0.516 6.516 17 C 0.088 3.912 18 H 0.132 0.868 19 O -0.381 6.381 20 C 0.054 3.946 21 C -0.148 4.148 22 H 0.115 0.885 23 C 0.081 3.919 24 O -0.401 6.401 25 C 0.066 3.934 26 C -0.138 4.138 27 C -0.124 4.124 28 H 0.068 0.932 29 C -0.250 4.250 30 H 0.292 0.708 31 H 0.117 0.883 32 H 0.148 0.852 33 H 0.421 0.579 34 H 0.122 0.878 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.128 0.872 38 H 0.116 0.884 39 H 0.042 0.958 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.908 -0.170 7.297 16.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.177 4.177 3 Si 0.809 3.191 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.185 1.185 7 C -0.516 4.516 8 H 0.101 0.899 9 C 0.107 3.893 10 C -0.317 4.317 11 C -0.043 4.043 12 N -0.300 5.300 13 C 0.104 3.896 14 N -0.294 5.294 15 C 0.270 3.730 16 O -0.388 6.388 17 C 0.026 3.974 18 H 0.149 0.851 19 O -0.300 6.300 20 C -0.021 4.021 21 C -0.166 4.166 22 H 0.133 0.867 23 C 0.005 3.995 24 O -0.320 6.320 25 C -0.011 4.011 26 C -0.175 4.175 27 C -0.143 4.143 28 H 0.087 0.913 29 C -0.275 4.275 30 H 0.103 0.897 31 H 0.135 0.865 32 H 0.166 0.834 33 H 0.260 0.740 34 H 0.140 0.860 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.146 0.854 38 H 0.134 0.866 39 H 0.060 0.940 40 H 0.119 0.881 41 H 0.103 0.897 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -15.357 -1.716 7.275 17.079 hybrid contribution 1.216 1.624 -0.655 2.132 sum -14.140 -0.092 6.620 15.614 Atomic orbital electron populations 1.69772 1.08845 1.30820 1.34953 1.26772 0.95695 1.04376 0.90840 0.85051 0.79220 0.75766 0.79047 1.18369 1.19150 1.18498 1.19879 0.96186 0.90893 1.44671 0.89928 1.18015 0.91024 0.93254 0.87003 1.22145 1.05230 0.94470 1.09850 1.22209 0.90386 0.97559 0.94171 1.67343 1.16482 1.28977 1.17214 1.18470 0.87804 0.90459 0.92841 1.43389 1.23778 1.10061 1.52157 1.21769 0.85747 0.83111 0.82332 1.90757 1.62756 1.35356 1.49913 1.22203 0.91434 0.85065 0.98654 0.85101 1.89058 1.30407 1.25682 1.84822 1.23263 0.80446 0.97220 1.01212 1.23268 0.95749 0.94631 1.02990 0.86675 1.22434 0.97315 0.81827 0.97905 1.87700 1.39362 1.16233 1.88716 1.22656 0.86669 0.93416 0.98334 1.22059 0.98937 0.93047 1.03480 1.22326 0.93081 0.98460 1.00391 0.91317 1.21573 1.01877 0.95575 1.08484 0.89701 0.86495 0.83431 0.74029 0.86045 0.92291 0.93035 0.85436 0.86576 0.94006 0.88109 0.89660 0.85369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.07 10.84 21.84 0.24 -38.83 16 2 C 0.04 1.85 5.30 85.29 0.45 2.30 16 3 Si 0.99 35.31 29.57 68.60 2.03 37.33 16 4 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 5 H -0.27 -9.20 7.11 99.48 0.71 -8.49 16 6 H -0.26 -8.80 7.11 99.48 0.71 -8.10 16 7 C -0.49 -24.90 9.13 23.52 0.21 -24.69 16 8 H 0.08 4.08 7.87 -2.91 -0.02 4.06 16 9 C 0.12 6.14 5.58 -21.11 -0.12 6.02 16 10 C -0.29 -14.67 9.90 22.84 0.23 -14.44 16 11 C 0.11 5.45 11.15 84.50 0.94 6.39 16 12 N -0.58 -30.68 7.85 -193.54 -1.52 -32.20 16 13 C 0.33 16.31 7.42 132.75 0.98 17.30 16 14 N -0.64 -25.30 5.38 -308.67 -1.66 -26.96 16 15 C 0.48 19.02 7.01 87.66 0.61 19.63 16 16 O -0.52 -25.81 14.80 15.45 0.23 -25.58 16 17 C 0.09 2.40 3.67 29.54 0.11 2.51 16 18 H 0.13 2.89 8.10 -2.39 -0.02 2.87 16 19 O -0.38 -11.43 10.73 -130.53 -1.40 -12.83 16 20 C 0.05 1.09 7.46 71.91 0.54 1.63 16 21 C -0.15 -2.43 2.65 -10.31 -0.03 -2.46 16 22 H 0.12 1.63 8.05 -2.39 -0.02 1.61 16 23 C 0.08 1.21 6.78 71.47 0.48 1.69 16 24 O -0.40 -7.24 10.60 -148.98 -1.58 -8.82 16 25 C 0.07 1.08 6.86 72.33 0.50 1.57 16 26 C -0.14 -2.25 5.92 30.41 0.18 -2.07 16 27 C -0.12 -2.63 1.84 -10.58 -0.02 -2.65 16 28 H 0.07 1.79 7.74 -2.39 -0.02 1.77 16 29 C -0.25 -12.75 8.58 22.98 0.20 -12.55 16 30 H 0.29 12.35 8.29 -92.71 -0.77 11.58 16 31 H 0.12 5.33 8.06 -2.91 -0.02 5.31 16 32 H 0.15 6.32 8.06 -2.91 -0.02 6.30 16 33 H 0.42 13.17 7.86 -92.71 -0.73 12.44 16 34 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.05 0.83 8.02 -2.39 -0.02 0.81 16 37 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.10 1.30 8.07 -2.38 -0.02 1.28 16 41 H 0.08 1.41 7.31 -2.39 -0.02 1.39 16 42 H 0.13 6.42 6.27 -2.91 -0.02 6.40 16 Total: -1.00 -72.49 344.74 1.93 -70.56 By element: Atomic # 1 Polarization: 36.81 SS G_CDS: 0.32 Total: 37.13 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 5.27 Total: 0.19 kcal Atomic # 7 Polarization: -95.04 SS G_CDS: -2.94 Total: -97.99 kcal Atomic # 8 Polarization: -44.47 SS G_CDS: -2.75 Total: -47.23 kcal Atomic # 14 Polarization: 35.31 SS G_CDS: 2.03 Total: 37.33 kcal Total: -72.49 1.93 -70.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577311639.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.868 kcal (2) G-P(sol) polarization free energy of solvation -72.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds