Wall clock time and date at job start Tue Mar 31 2020 12:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86795 * 120.00039 * 2 1 4 4 H 1.48493 * 109.47339 * 274.99563 * 3 2 1 5 5 H 1.48500 * 109.47466 * 35.00126 * 3 2 1 6 6 H 1.48499 * 109.46824 * 154.99617 * 3 2 1 7 7 C 1.40033 * 119.99687 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99950 * 150.82629 * 7 2 1 9 9 C 1.41536 * 120.00134 * 330.82782 * 7 2 1 10 10 C 1.41179 * 120.99896 * 344.97571 * 9 7 2 11 11 C 1.37587 * 119.01736 * 179.77719 * 10 9 7 12 12 N 1.32082 * 121.11045 * 0.51144 * 11 10 9 13 13 C 1.32468 * 122.22895 * 359.74286 * 12 11 10 14 14 N 1.39471 * 119.57915 * 179.97438 * 13 12 11 15 15 C 1.34773 * 119.99863 * 354.63545 * 14 13 12 16 16 O 1.21273 * 120.00212 * 4.88529 * 15 14 13 17 17 C 1.50700 * 119.99827 * 184.88685 * 15 14 13 18 18 H 1.09001 * 110.37435 * 304.29828 * 17 15 14 19 19 O 1.43934 * 110.41892 * 181.92344 * 17 15 14 20 20 C 1.43769 * 109.64089 * 215.16758 * 19 17 15 21 21 C 1.53683 * 106.82664 * 1.34746 * 20 19 17 22 22 H 1.08999 * 109.73337 * 267.27973 * 21 20 19 23 23 C 1.51236 * 112.33206 * 144.91202 * 21 20 19 24 24 O 1.42286 * 111.67813 * 294.74933 * 23 21 20 25 25 C 1.43206 * 112.89057 * 299.78611 * 24 23 21 26 26 C 1.52756 * 108.43891 * 64.74766 * 25 24 23 27 27 C 1.53098 * 110.44958 * 300.07883 * 26 25 24 28 28 H 1.09006 * 113.40017 * 283.64677 * 27 26 25 29 29 C 1.38601 * 120.84250 * 359.97438 * 13 12 11 30 30 H 0.97006 * 120.00050 * 359.97438 * 1 2 3 31 31 H 1.08009 * 120.48813 * 0.02562 * 10 9 7 32 32 H 1.08002 * 119.44391 * 180.25391 * 11 10 9 33 33 H 0.97001 * 119.99746 * 174.63352 * 14 13 12 34 34 H 1.08996 * 109.98524 * 120.68388 * 20 19 17 35 35 H 1.08992 * 109.99088 * 241.96422 * 20 19 17 36 36 H 1.08994 * 109.07465 * 55.51850 * 23 21 20 37 37 H 1.08999 * 109.07102 * 174.48271 * 23 21 20 38 38 H 1.08997 * 109.64182 * 305.06010 * 25 24 23 39 39 H 1.09005 * 109.81681 * 184.53422 * 25 24 23 40 40 H 1.09000 * 109.30826 * 179.78325 * 26 25 24 41 41 H 1.09001 * 109.30855 * 60.37613 * 26 25 24 42 42 H 1.07999 * 120.60348 * 179.97438 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3834 2.1073 -1.3947 5 1 1.4958 2.6199 0.8031 6 1 3.5877 1.4119 0.5918 7 6 2.0075 -1.2128 -0.0005 8 1 2.9848 -1.2719 -0.4565 9 6 1.4344 -2.3610 0.5964 10 6 0.3245 -2.2532 1.4622 11 6 -0.2031 -3.3966 2.0165 12 7 0.3176 -4.5829 1.7590 13 6 1.3615 -4.7375 0.9583 14 7 1.8670 -6.0163 0.7253 15 6 1.3644 -7.0720 1.3956 16 8 0.4145 -6.9245 2.1349 17 6 1.9830 -8.4358 1.2265 18 1 1.9987 -8.7174 0.1736 19 8 1.2611 -9.4137 1.9973 20 6 2.1769 -10.3948 2.5127 21 6 3.5823 -9.9765 2.0525 22 1 3.8235 -10.4703 1.1112 23 6 4.6427 -10.2948 3.0828 24 8 4.4646 -9.5350 4.2725 25 6 4.5327 -8.1225 4.0468 26 6 3.3591 -7.7183 3.1564 27 6 3.4255 -8.4556 1.8164 28 1 4.1732 -8.0492 1.1352 29 6 1.9577 -3.6447 0.3490 30 1 -0.4850 0.8401 0.0004 31 1 -0.1066 -1.2878 1.6829 32 1 -1.0548 -3.3226 2.6765 33 1 2.5802 -6.1459 0.0808 34 1 2.1310 -10.4116 3.6015 35 1 1.9314 -11.3792 2.1143 36 1 4.5963 -11.3564 3.3255 37 1 5.6240 -10.0686 2.6655 38 1 5.4712 -7.8756 3.5504 39 1 4.4708 -7.5929 4.9975 40 1 3.3952 -6.6435 2.9785 41 1 2.4239 -7.9664 3.6583 42 1 2.8089 -3.7751 -0.3028 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577311640.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:02 Heat of formation + Delta-G solvation = -83.475405 kcal Electronic energy + Delta-G solvation = -26914.021419 eV Core-core repulsion = 23052.222928 eV Total energy + Delta-G solvation = -3861.798491 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.20484 -39.31914 -38.00488 -37.21171 -34.53784 -33.75215 -33.09037 -32.08885 -30.75274 -29.53724 -27.98661 -26.04772 -25.70544 -23.98212 -23.36424 -21.80260 -21.40357 -19.82167 -19.50247 -17.98267 -17.21281 -16.91351 -16.41044 -16.03408 -15.84944 -15.51521 -15.36376 -14.99054 -14.49266 -14.27274 -14.13193 -13.79392 -13.53978 -13.18135 -12.96697 -12.77067 -12.64251 -12.50184 -12.39764 -12.05007 -11.77939 -11.52029 -11.28684 -11.20468 -10.97737 -10.84377 -10.48672 -10.45853 -10.13234 -9.96338 -9.75351 -9.66311 -9.26369 -9.17452 -8.15633 -7.69512 -7.07243 -6.97586 -4.63111 2.53754 2.71113 2.97261 3.01179 3.10469 3.19529 3.40833 3.64588 3.78017 3.90304 3.97397 4.37097 4.53001 4.57454 4.70532 4.74287 4.95531 5.00839 5.05719 5.15290 5.27710 5.30328 5.33878 5.41060 5.57158 5.63278 5.68935 5.78975 5.90194 5.99379 6.20541 6.55173 6.56941 6.73139 6.80906 6.84134 6.90605 7.07831 7.38530 7.46790 7.78331 7.81746 8.13690 8.41318 8.65545 8.68532 8.84303 9.71462 9.90132 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024562 B = 0.002996 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.715868 B = 9342.625615 C = 9878.209441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.085 3.915 3 Si 0.905 3.095 4 H -0.268 1.268 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.455 4.455 8 H 0.083 0.917 9 C 0.144 3.856 10 C -0.241 4.241 11 C 0.109 3.891 12 N -0.561 5.561 13 C 0.355 3.645 14 N -0.659 5.659 15 C 0.500 3.500 16 O -0.455 6.455 17 C 0.065 3.935 18 H 0.092 0.908 19 O -0.349 6.349 20 C 0.057 3.943 21 C -0.156 4.156 22 H 0.094 0.906 23 C 0.073 3.927 24 O -0.375 6.375 25 C 0.062 3.938 26 C -0.158 4.158 27 C -0.105 4.105 28 H 0.108 0.892 29 C -0.314 4.314 30 H 0.286 0.714 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.404 0.596 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.595 -14.225 1.396 17.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.138 4.138 3 Si 0.728 3.272 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.485 4.485 8 H 0.101 0.899 9 C 0.136 3.864 10 C -0.264 4.264 11 C -0.042 4.042 12 N -0.281 5.281 13 C 0.128 3.872 14 N -0.307 5.307 15 C 0.283 3.717 16 O -0.322 6.322 17 C 0.003 3.997 18 H 0.110 0.890 19 O -0.267 6.267 20 C -0.019 4.019 21 C -0.175 4.175 22 H 0.112 0.888 23 C -0.004 4.004 24 O -0.294 6.294 25 C -0.014 4.014 26 C -0.196 4.196 27 C -0.124 4.124 28 H 0.126 0.874 29 C -0.340 4.340 30 H 0.097 0.903 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.238 0.762 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.114 0.886 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.116 0.884 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.994 -14.895 2.600 17.593 hybrid contribution 1.277 1.601 -1.320 2.437 sum 10.271 -13.293 1.279 16.848 Atomic orbital electron populations 1.69865 1.08154 1.30101 1.30443 1.26027 0.94485 1.01843 0.91425 0.86354 0.81237 0.80308 0.79284 1.19339 1.19726 1.18057 1.19552 1.03491 0.92756 1.32706 0.89867 1.17501 0.89562 0.91041 0.88256 1.22136 1.02178 0.98776 1.03296 1.21849 0.97395 0.87657 0.97266 1.67234 1.13136 1.26567 1.21134 1.17960 0.92212 0.82580 0.94424 1.43362 1.38974 1.05551 1.42801 1.20228 0.84700 0.84957 0.81827 1.90820 1.23882 1.83587 1.33903 1.23146 0.90873 0.88991 0.96685 0.89047 1.88713 1.30919 1.37505 1.69586 1.23130 0.86877 0.91968 0.99945 1.22777 0.97375 0.96343 1.00977 0.88813 1.21848 0.96211 0.96641 0.85727 1.88017 1.93421 1.17605 1.30314 1.22595 0.96905 0.81401 1.00501 1.22222 1.01128 1.01261 0.94995 1.22930 0.96003 0.95198 0.98298 0.87424 1.21030 1.08279 0.91985 1.12736 0.90310 0.85896 0.86028 0.76162 0.90279 0.90980 0.88591 0.92816 0.92807 0.88382 0.89969 0.89424 0.88241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.70 11.15 55.55 0.62 -18.08 16 2 C 0.09 2.02 5.00 -17.34 -0.09 1.94 16 3 Si 0.91 17.42 29.65 -169.99 -5.04 12.38 16 4 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 5 H -0.27 -5.15 7.11 56.52 0.40 -4.74 16 6 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 7 C -0.46 -11.48 9.06 -37.65 -0.34 -11.82 16 8 H 0.08 1.99 7.99 -52.49 -0.42 1.57 16 9 C 0.14 3.75 5.66 -106.55 -0.60 3.15 16 10 C -0.24 -6.23 8.90 -38.70 -0.34 -6.58 16 11 C 0.11 2.74 11.15 -17.68 -0.20 2.54 16 12 N -0.56 -14.44 7.85 -12.52 -0.10 -14.54 16 13 C 0.36 8.26 7.42 -154.70 -1.15 7.11 16 14 N -0.66 -11.92 5.39 -11.49 -0.06 -11.98 16 15 C 0.50 9.27 5.46 -10.99 -0.06 9.21 16 16 O -0.45 -10.84 14.81 -13.68 -0.20 -11.05 16 17 C 0.06 0.88 3.52 -26.36 -0.09 0.78 16 18 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 19 O -0.35 -5.38 10.21 -54.47 -0.56 -5.93 16 20 C 0.06 0.63 6.79 37.51 0.25 0.89 16 21 C -0.16 -1.34 2.98 -90.25 -0.27 -1.61 16 22 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 23 C 0.07 0.58 6.10 36.27 0.22 0.80 16 24 O -0.38 -4.12 10.46 -35.23 -0.37 -4.49 16 25 C 0.06 0.66 6.83 37.03 0.25 0.91 16 26 C -0.16 -2.02 4.13 -26.81 -0.11 -2.13 16 27 C -0.11 -1.10 3.64 -88.14 -0.32 -1.42 16 28 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 29 C -0.31 -7.43 9.73 -38.48 -0.37 -7.80 16 30 H 0.29 6.28 8.29 -40.82 -0.34 5.94 16 31 H 0.12 3.21 6.06 -52.48 -0.32 2.89 16 32 H 0.12 2.78 8.06 -52.49 -0.42 2.36 16 33 H 0.40 5.53 8.70 -40.82 -0.36 5.18 16 34 H 0.08 0.94 7.64 -51.93 -0.40 0.54 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.36 8.13 -51.93 -0.42 -0.07 16 38 H 0.05 0.48 8.12 -51.93 -0.42 0.05 16 39 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.08 1.18 7.77 -51.93 -0.40 0.77 16 41 H 0.09 1.40 6.96 -51.93 -0.36 1.04 16 42 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 341.82 15.07 5.15 5.15 Total: -1.00 -32.99 341.82 -9.39 -42.38 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -5.61 Total: 10.19 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -3.22 Total: -4.03 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.46 Total: -44.60 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -1.13 Total: -21.47 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.04 Total: 12.38 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.99 -9.39 -42.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577311640.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.095 kcal (2) G-P(sol) polarization free energy of solvation -32.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds