Wall clock time and date at job start Tue Mar 31 2020 12:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86795 * 120.00039 * 2 1 4 4 H 1.48493 * 109.47339 * 274.99563 * 3 2 1 5 5 H 1.48500 * 109.47466 * 35.00126 * 3 2 1 6 6 H 1.48499 * 109.46824 * 154.99617 * 3 2 1 7 7 C 1.40033 * 119.99687 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99950 * 150.82629 * 7 2 1 9 9 C 1.41536 * 120.00134 * 330.82782 * 7 2 1 10 10 C 1.41179 * 120.99896 * 344.97571 * 9 7 2 11 11 C 1.37587 * 119.01736 * 179.77719 * 10 9 7 12 12 N 1.32082 * 121.11045 * 0.51144 * 11 10 9 13 13 C 1.32468 * 122.22895 * 359.74286 * 12 11 10 14 14 N 1.39471 * 119.57915 * 179.97438 * 13 12 11 15 15 C 1.34773 * 119.99863 * 354.63545 * 14 13 12 16 16 O 1.21273 * 120.00212 * 4.88529 * 15 14 13 17 17 C 1.50700 * 119.99827 * 184.88685 * 15 14 13 18 18 H 1.09001 * 110.37435 * 304.29828 * 17 15 14 19 19 O 1.43934 * 110.41892 * 181.92344 * 17 15 14 20 20 C 1.43769 * 109.64089 * 215.16758 * 19 17 15 21 21 C 1.53683 * 106.82664 * 1.34746 * 20 19 17 22 22 H 1.08999 * 109.73337 * 267.27973 * 21 20 19 23 23 C 1.51236 * 112.33206 * 144.91202 * 21 20 19 24 24 O 1.42286 * 111.67813 * 294.74933 * 23 21 20 25 25 C 1.43206 * 112.89057 * 299.78611 * 24 23 21 26 26 C 1.52756 * 108.43891 * 64.74766 * 25 24 23 27 27 C 1.53098 * 110.44958 * 300.07883 * 26 25 24 28 28 H 1.09006 * 113.40017 * 283.64677 * 27 26 25 29 29 C 1.38601 * 120.84250 * 359.97438 * 13 12 11 30 30 H 0.97006 * 120.00050 * 359.97438 * 1 2 3 31 31 H 1.08009 * 120.48813 * 0.02562 * 10 9 7 32 32 H 1.08002 * 119.44391 * 180.25391 * 11 10 9 33 33 H 0.97001 * 119.99746 * 174.63352 * 14 13 12 34 34 H 1.08996 * 109.98524 * 120.68388 * 20 19 17 35 35 H 1.08992 * 109.99088 * 241.96422 * 20 19 17 36 36 H 1.08994 * 109.07465 * 55.51850 * 23 21 20 37 37 H 1.08999 * 109.07102 * 174.48271 * 23 21 20 38 38 H 1.08997 * 109.64182 * 305.06010 * 25 24 23 39 39 H 1.09005 * 109.81681 * 184.53422 * 25 24 23 40 40 H 1.09000 * 109.30826 * 179.78325 * 26 25 24 41 41 H 1.09001 * 109.30855 * 60.37613 * 26 25 24 42 42 H 1.07999 * 120.60348 * 179.97438 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3834 2.1073 -1.3947 5 1 1.4958 2.6199 0.8031 6 1 3.5877 1.4119 0.5918 7 6 2.0075 -1.2128 -0.0005 8 1 2.9848 -1.2719 -0.4565 9 6 1.4344 -2.3610 0.5964 10 6 0.3245 -2.2532 1.4622 11 6 -0.2031 -3.3966 2.0165 12 7 0.3176 -4.5829 1.7590 13 6 1.3615 -4.7375 0.9583 14 7 1.8670 -6.0163 0.7253 15 6 1.3644 -7.0720 1.3956 16 8 0.4145 -6.9245 2.1349 17 6 1.9830 -8.4358 1.2265 18 1 1.9987 -8.7174 0.1736 19 8 1.2611 -9.4137 1.9973 20 6 2.1769 -10.3948 2.5127 21 6 3.5823 -9.9765 2.0525 22 1 3.8235 -10.4703 1.1112 23 6 4.6427 -10.2948 3.0828 24 8 4.4646 -9.5350 4.2725 25 6 4.5327 -8.1225 4.0468 26 6 3.3591 -7.7183 3.1564 27 6 3.4255 -8.4556 1.8164 28 1 4.1732 -8.0492 1.1352 29 6 1.9577 -3.6447 0.3490 30 1 -0.4850 0.8401 0.0004 31 1 -0.1066 -1.2878 1.6829 32 1 -1.0548 -3.3226 2.6765 33 1 2.5802 -6.1459 0.0808 34 1 2.1310 -10.4116 3.6015 35 1 1.9314 -11.3792 2.1143 36 1 4.5963 -11.3564 3.3255 37 1 5.6240 -10.0686 2.6655 38 1 5.4712 -7.8756 3.5504 39 1 4.4708 -7.5929 4.9975 40 1 3.3952 -6.6435 2.9785 41 1 2.4239 -7.9664 3.6583 42 1 2.8089 -3.7751 -0.3028 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577311640.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:01 Heat of formation + Delta-G solvation = -105.694365 kcal Electronic energy + Delta-G solvation = -26914.984905 eV Core-core repulsion = 23052.222928 eV Total energy + Delta-G solvation = -3862.761977 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.22475 -40.83384 -39.44892 -38.40620 -36.30434 -35.41834 -34.12083 -32.89981 -32.65527 -30.94700 -29.40423 -27.94332 -26.46384 -25.08938 -24.36648 -23.66285 -22.97321 -21.00951 -20.64649 -19.72725 -18.42819 -17.96872 -17.56340 -17.33293 -16.95955 -16.82060 -16.41246 -16.22323 -16.06408 -15.82160 -15.78001 -15.28200 -14.76223 -14.40083 -14.32860 -14.18592 -14.10757 -13.60624 -13.34674 -13.25075 -13.15001 -13.02204 -12.72387 -12.62554 -12.13723 -12.04936 -11.95731 -11.69196 -11.49119 -11.24190 -11.07781 -10.98843 -10.60028 -10.49473 -10.08543 -9.55507 -8.89857 -8.79282 -6.55901 0.74961 0.96599 1.39307 1.50721 1.58773 1.83051 1.84343 2.16827 2.71270 2.86907 2.94923 3.14430 3.42171 3.60463 3.75212 3.81578 3.94188 4.00564 4.15228 4.19819 4.27157 4.34664 4.47425 4.58534 4.66257 4.71144 4.74984 4.75716 4.83417 4.84653 4.92983 4.99066 5.00629 5.09017 5.20519 5.21661 5.47541 5.60543 5.79705 5.89430 6.13773 6.20820 6.41920 6.59976 6.76922 6.80284 7.30049 7.86793 8.13238 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024562 B = 0.002996 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.715868 B = 9342.625615 C = 9878.209441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.045 3.955 3 Si 0.984 3.016 4 H -0.257 1.257 5 H -0.266 1.266 6 H -0.255 1.255 7 C -0.479 4.479 8 H 0.092 0.908 9 C 0.116 3.884 10 C -0.261 4.261 11 C 0.099 3.901 12 N -0.591 5.591 13 C 0.353 3.647 14 N -0.643 5.643 15 C 0.497 3.503 16 O -0.518 6.518 17 C 0.070 3.930 18 H 0.130 0.870 19 O -0.389 6.389 20 C 0.050 3.950 21 C -0.142 4.142 22 H 0.133 0.867 23 C 0.065 3.935 24 O -0.396 6.396 25 C 0.067 3.933 26 C -0.154 4.154 27 C -0.097 4.097 28 H 0.146 0.854 29 C -0.322 4.322 30 H 0.296 0.704 31 H 0.113 0.887 32 H 0.132 0.868 33 H 0.427 0.573 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.115 0.885 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.058 0.942 41 H 0.042 0.958 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.772 -15.160 -0.368 20.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.176 4.176 3 Si 0.803 3.197 4 H -0.181 1.181 5 H -0.191 1.191 6 H -0.178 1.178 7 C -0.508 4.508 8 H 0.110 0.890 9 C 0.108 3.892 10 C -0.284 4.284 11 C -0.051 4.051 12 N -0.312 5.312 13 C 0.125 3.875 14 N -0.293 5.293 15 C 0.283 3.717 16 O -0.389 6.389 17 C 0.009 3.991 18 H 0.148 0.852 19 O -0.308 6.308 20 C -0.026 4.026 21 C -0.161 4.161 22 H 0.151 0.849 23 C -0.011 4.011 24 O -0.315 6.315 25 C -0.009 4.009 26 C -0.192 4.192 27 C -0.116 4.116 28 H 0.164 0.836 29 C -0.347 4.347 30 H 0.108 0.892 31 H 0.131 0.869 32 H 0.150 0.850 33 H 0.265 0.735 34 H 0.076 0.924 35 H 0.115 0.885 36 H 0.133 0.867 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 12.209 -15.876 0.802 20.044 hybrid contribution 0.226 1.835 -0.759 1.998 sum 12.435 -14.042 0.043 18.757 Atomic orbital electron populations 1.69889 1.09778 1.31785 1.30131 1.26973 0.95170 1.05181 0.90257 0.85168 0.79498 0.75236 0.79766 1.18101 1.19083 1.17815 1.19899 1.04028 0.93603 1.33285 0.89006 1.17912 0.89971 0.92539 0.88782 1.22098 1.03254 0.98446 1.04650 1.22073 0.97825 0.87754 0.97464 1.67328 1.14649 1.26626 1.22563 1.18258 0.91338 0.84674 0.93206 1.43285 1.39095 1.03849 1.43082 1.21290 0.83665 0.86673 0.80041 1.90788 1.26874 1.84786 1.36470 1.23256 0.91807 0.85392 0.98665 0.85249 1.88681 1.33285 1.38583 1.70212 1.23339 0.88174 0.92138 0.98969 1.22811 0.95794 0.94575 1.02871 0.84926 1.22146 0.97039 0.97270 0.84659 1.88001 1.93588 1.17617 1.32314 1.22545 0.96815 0.81597 0.99969 1.22110 1.00110 1.00138 0.96889 1.23080 0.94679 0.96787 0.97014 0.83600 1.21243 1.09001 0.91347 1.13150 0.89244 0.86866 0.85008 0.73463 0.92355 0.88487 0.86724 0.90238 0.90140 0.89167 0.92350 0.93885 0.85675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.29 11.15 21.84 0.24 -39.05 16 2 C 0.05 2.13 5.00 85.29 0.43 2.56 16 3 Si 0.98 34.97 29.65 68.60 2.03 37.00 16 4 H -0.26 -8.62 7.11 99.48 0.71 -7.91 16 5 H -0.27 -9.14 7.11 99.48 0.71 -8.43 16 6 H -0.25 -8.90 7.11 99.48 0.71 -8.19 16 7 C -0.48 -24.25 9.06 23.52 0.21 -24.03 16 8 H 0.09 4.34 7.99 -2.91 -0.02 4.31 16 9 C 0.12 6.15 5.66 -21.11 -0.12 6.03 16 10 C -0.26 -14.10 8.90 22.84 0.20 -13.90 16 11 C 0.10 5.26 11.15 84.50 0.94 6.20 16 12 N -0.59 -31.73 7.85 -193.53 -1.52 -33.25 16 13 C 0.35 16.71 7.42 132.75 0.98 17.69 16 14 N -0.64 -22.99 5.39 -308.66 -1.66 -24.65 16 15 C 0.50 18.60 5.46 87.66 0.48 19.08 16 16 O -0.52 -25.94 14.81 15.39 0.23 -25.71 16 17 C 0.07 1.77 3.52 30.84 0.11 1.88 16 18 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 19 O -0.39 -11.82 10.21 -130.58 -1.33 -13.16 16 20 C 0.05 1.01 6.79 72.21 0.49 1.50 16 21 C -0.14 -1.87 2.98 -10.56 -0.03 -1.90 16 22 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 23 C 0.07 0.78 6.10 71.41 0.44 1.22 16 24 O -0.40 -7.99 10.46 -148.98 -1.56 -9.55 16 25 C 0.07 1.33 6.83 71.90 0.49 1.82 16 26 C -0.15 -3.91 4.13 30.55 0.13 -3.79 16 27 C -0.10 -1.74 3.64 -9.19 -0.03 -1.77 16 28 H 0.15 1.57 8.14 -2.38 -0.02 1.55 16 29 C -0.32 -15.30 9.73 22.99 0.22 -15.07 16 30 H 0.30 13.05 8.29 -92.70 -0.77 12.28 16 31 H 0.11 6.20 6.06 -2.91 -0.02 6.18 16 32 H 0.13 6.41 8.06 -2.91 -0.02 6.38 16 33 H 0.43 10.77 8.70 -92.71 -0.81 9.96 16 34 H 0.06 1.39 7.64 -2.39 -0.02 1.37 16 35 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 0.62 8.13 -2.39 -0.02 0.60 16 38 H 0.08 1.18 8.12 -2.39 -0.02 1.16 16 39 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.06 1.72 7.77 -2.39 -0.02 1.70 16 41 H 0.04 1.46 6.96 -2.39 -0.02 1.45 16 42 H 0.13 5.12 8.06 -2.91 -0.02 5.10 16 Total: -1.00 -77.56 341.82 1.62 -75.94 By element: Atomic # 1 Polarization: 34.64 SS G_CDS: 0.25 Total: 34.89 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 4.94 Total: -2.48 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -2.94 Total: -96.94 kcal Atomic # 8 Polarization: -45.75 SS G_CDS: -2.66 Total: -48.41 kcal Atomic # 14 Polarization: 34.97 SS G_CDS: 2.03 Total: 37.00 kcal Total: -77.56 1.62 -75.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577311640.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.752 kcal (2) G-P(sol) polarization free energy of solvation -77.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds