Wall clock time and date at job start Tue Mar 31 2020 12:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86799 * 120.00380 * 2 1 4 4 H 1.48499 * 109.46973 * 239.99866 * 3 2 1 5 5 H 1.48505 * 109.46898 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47190 * 119.99516 * 3 2 1 7 7 C 1.40034 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00102 * 197.07412 * 7 2 1 9 9 C 1.41543 * 119.99998 * 17.07157 * 7 2 1 10 10 C 1.41174 * 120.99433 * 203.54701 * 9 7 2 11 11 C 1.37592 * 119.01705 * 180.02562 * 10 9 7 12 12 N 1.32083 * 121.10365 * 359.97438 * 11 10 9 13 13 C 1.32468 * 122.23587 * 0.02562 * 12 11 10 14 14 N 1.39471 * 119.58380 * 179.97438 * 13 12 11 15 15 C 1.34780 * 119.99648 * 5.20014 * 14 13 12 16 16 O 1.21275 * 119.99918 * 355.14779 * 15 14 13 17 17 C 1.50699 * 119.99996 * 175.15829 * 15 14 13 18 18 H 1.09003 * 109.96108 * 303.95173 * 17 15 14 19 19 O 1.43349 * 109.86764 * 182.90825 * 17 15 14 20 20 C 1.43782 * 109.86680 * 240.36221 * 19 17 15 21 21 C 1.53994 * 104.63577 * 23.96686 * 20 19 17 22 22 H 1.09001 * 109.70443 * 78.31616 * 21 20 19 23 23 C 1.50957 * 112.59742 * 200.79195 * 21 20 19 24 24 O 1.42687 * 111.79409 * 66.27858 * 23 21 20 25 25 C 1.42805 * 112.78886 * 59.81546 * 24 23 21 26 26 C 1.52717 * 108.33749 * 294.59960 * 25 24 23 27 27 C 1.53118 * 110.61644 * 60.07517 * 26 25 24 28 28 H 1.09004 * 112.80174 * 76.65672 * 27 26 25 29 29 C 1.38599 * 120.83599 * 0.27122 * 13 12 11 30 30 H 0.96998 * 119.99699 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.49644 * 0.02562 * 10 9 7 32 32 H 1.07994 * 119.45065 * 179.97438 * 11 10 9 33 33 H 0.96995 * 120.00016 * 185.19513 * 14 13 12 34 34 H 1.08990 * 110.53675 * 265.08412 * 20 19 17 35 35 H 1.08999 * 110.20663 * 142.67766 * 20 19 17 36 36 H 1.09005 * 109.01442 * 186.87246 * 23 21 20 37 37 H 1.09002 * 109.01601 * 305.68240 * 23 21 20 38 38 H 1.09005 * 109.76566 * 174.82953 * 25 24 23 39 39 H 1.09003 * 109.60928 * 54.27945 * 25 24 23 40 40 H 1.09000 * 109.24820 * 299.78090 * 26 25 24 41 41 H 1.09004 * 109.24490 * 180.37091 * 26 25 24 42 42 H 1.08005 * 120.59906 * 179.72607 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6962 -1.2125 5 1 1.2765 2.7465 -0.0006 6 1 3.0952 1.6963 1.2126 7 6 2.0075 -1.2128 0.0005 8 1 3.0519 -1.2333 0.2752 9 6 1.3465 -2.4117 -0.3588 10 6 1.8237 -3.6651 0.0820 11 6 1.1498 -4.8049 -0.2921 12 7 0.0710 -4.7415 -1.0515 13 6 -0.4171 -3.5912 -1.4910 14 7 -1.5599 -3.5887 -2.2905 15 6 -2.2207 -4.7397 -2.5251 16 8 -1.7738 -5.7899 -2.1149 17 6 -3.5148 -4.7218 -3.2972 18 1 -4.2255 -4.0493 -2.8168 19 8 -4.0625 -6.0449 -3.3607 20 6 -4.1758 -6.4616 -4.7322 21 6 -3.1336 -5.6130 -5.4839 22 1 -2.1384 -6.0287 -5.3264 23 6 -3.4185 -5.5214 -6.9636 24 8 -4.6217 -4.8014 -7.2278 25 6 -4.5843 -3.4618 -6.7345 26 6 -4.5108 -3.5131 -5.2100 27 6 -3.2526 -4.2580 -4.7556 28 1 -2.3487 -3.6557 -4.8474 29 6 0.1969 -2.3904 -1.1715 30 1 -0.4849 0.8401 -0.0004 31 1 2.7047 -3.7285 0.7035 32 1 1.5090 -5.7674 0.0408 33 1 -1.8791 -2.7586 -2.6777 34 1 -5.1770 -6.2588 -5.1120 35 1 -3.9407 -7.5220 -4.8241 36 1 -2.5869 -5.0159 -7.4547 37 1 -3.5105 -6.5284 -7.3706 38 1 -5.4855 -2.9307 -7.0413 39 1 -3.7052 -2.9514 -7.1279 40 1 -5.3915 -4.0271 -4.8248 41 1 -4.4883 -2.4966 -4.8169 42 1 -0.2018 -1.4550 -1.5356 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577311641.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:07 Heat of formation + Delta-G solvation = -86.536244 kcal Electronic energy + Delta-G solvation = -26881.194777 eV Core-core repulsion = 23019.263558 eV Total energy + Delta-G solvation = -3861.931219 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.18248 -39.33415 -38.09643 -37.14810 -34.38065 -33.89828 -33.22582 -32.11469 -30.61175 -29.62176 -28.01631 -26.03334 -25.70369 -24.15902 -23.07303 -22.00432 -21.38574 -19.82463 -19.61899 -17.74050 -17.51042 -16.82469 -16.70150 -15.90854 -15.73873 -15.39007 -15.29709 -14.77661 -14.61248 -14.24669 -14.09322 -13.92874 -13.64044 -13.23502 -13.20645 -12.81740 -12.69527 -12.61385 -12.32758 -12.05596 -11.54482 -11.46171 -11.25854 -11.18742 -10.93713 -10.88207 -10.64070 -10.34435 -10.19211 -10.02095 -9.95417 -9.76889 -9.37975 -9.02999 -8.04349 -7.72658 -7.07100 -6.85517 -4.65333 2.50773 2.76326 2.97312 3.00220 3.13425 3.25600 3.42268 3.59571 3.80828 3.88591 4.02037 4.33215 4.53060 4.63132 4.69415 4.73153 4.90319 5.03520 5.07715 5.17489 5.24068 5.27361 5.35350 5.42764 5.54977 5.56651 5.65493 5.74115 5.81018 5.95485 5.96978 6.54557 6.59210 6.76188 6.81317 6.83302 6.91643 7.05856 7.35334 7.42412 7.73856 7.89303 8.16862 8.38625 8.66613 8.70306 8.86181 9.66335 10.01867 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017180 B = 0.003396 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.384078 B = 8242.556133 C = 9336.128420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.079 3.921 3 Si 0.911 3.089 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.456 4.456 8 H 0.082 0.918 9 C 0.144 3.856 10 C -0.285 4.285 11 C 0.120 3.880 12 N -0.556 5.556 13 C 0.338 3.662 14 N -0.657 5.657 15 C 0.484 3.516 16 O -0.461 6.461 17 C 0.069 3.931 18 H 0.106 0.894 19 O -0.349 6.349 20 C 0.061 3.939 21 C -0.157 4.157 22 H 0.097 0.903 23 C 0.074 3.926 24 O -0.376 6.376 25 C 0.059 3.941 26 C -0.153 4.153 27 C -0.108 4.108 28 H 0.105 0.895 29 C -0.245 4.245 30 H 0.283 0.717 31 H 0.102 0.898 32 H 0.124 0.876 33 H 0.405 0.595 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.962 -1.521 -13.136 15.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.140 4.140 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.487 4.487 8 H 0.100 0.900 9 C 0.136 3.864 10 C -0.309 4.309 11 C -0.035 4.035 12 N -0.275 5.275 13 C 0.113 3.887 14 N -0.305 5.305 15 C 0.267 3.733 16 O -0.329 6.329 17 C 0.007 3.993 18 H 0.123 0.877 19 O -0.266 6.266 20 C -0.016 4.016 21 C -0.176 4.176 22 H 0.115 0.885 23 C -0.003 4.003 24 O -0.294 6.294 25 C -0.018 4.018 26 C -0.191 4.191 27 C -0.127 4.127 28 H 0.123 0.877 29 C -0.270 4.270 30 H 0.094 0.906 31 H 0.120 0.880 32 H 0.141 0.859 33 H 0.240 0.760 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.584 -3.205 -12.990 16.458 hybrid contribution 0.969 2.335 0.287 2.545 sum -8.614 -0.869 -12.703 15.373 Atomic orbital electron populations 1.69774 1.07707 1.29529 1.34220 1.25955 0.94756 1.01477 0.91825 0.86314 0.80159 0.79829 0.80163 1.18701 1.20227 1.18832 1.19556 0.98003 0.90746 1.40439 0.89976 1.17546 0.89804 0.92250 0.86795 1.21897 1.05321 0.93874 1.09783 1.21768 0.90895 0.96857 0.93932 1.67223 1.15491 1.26515 1.18255 1.18177 0.87157 0.90844 0.92490 1.43411 1.26545 1.10410 1.50158 1.20885 0.85925 0.84623 0.81823 1.90788 1.65705 1.29718 1.46714 1.23001 0.94147 0.86555 0.95603 0.87696 1.88574 1.82798 1.29981 1.25295 1.23262 0.98222 0.98981 0.81103 1.22736 1.02039 0.95984 0.96853 0.88475 1.21861 0.87697 0.97745 0.92978 1.88018 1.37570 1.24834 1.78985 1.22527 1.02532 0.84076 0.92666 1.22260 0.97717 1.01679 0.97453 1.22709 0.99862 0.97004 0.93079 0.87714 1.21517 1.02698 0.95448 1.07360 0.90641 0.87969 0.85883 0.75999 0.91185 0.89509 0.92586 0.88380 0.88436 0.92687 0.90238 0.89915 0.85511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.03 10.94 55.55 0.61 -18.42 16 2 C 0.08 1.88 5.19 -17.34 -0.09 1.79 16 3 Si 0.91 17.54 29.59 -169.99 -5.03 12.51 16 4 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 5 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.46 -11.59 9.12 -37.65 -0.34 -11.94 16 8 H 0.08 1.99 7.90 -52.48 -0.41 1.58 16 9 C 0.14 3.76 5.60 -106.55 -0.60 3.17 16 10 C -0.28 -7.00 9.90 -38.70 -0.38 -7.38 16 11 C 0.12 2.90 11.15 -17.68 -0.20 2.70 16 12 N -0.56 -14.33 7.85 -12.52 -0.10 -14.43 16 13 C 0.34 8.16 7.42 -154.70 -1.15 7.01 16 14 N -0.66 -12.70 5.23 -11.49 -0.06 -12.76 16 15 C 0.48 9.35 7.10 -10.98 -0.08 9.27 16 16 O -0.46 -11.16 14.78 -14.06 -0.21 -11.37 16 17 C 0.07 0.98 3.21 -26.68 -0.09 0.89 16 18 H 0.11 1.30 7.73 -51.93 -0.40 0.90 16 19 O -0.35 -5.50 10.58 -54.86 -0.58 -6.08 16 20 C 0.06 0.72 6.76 37.68 0.25 0.97 16 21 C -0.16 -1.69 3.04 -90.45 -0.27 -1.97 16 22 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 23 C 0.07 0.65 6.18 36.13 0.22 0.87 16 24 O -0.38 -3.64 10.55 -35.23 -0.37 -4.01 16 25 C 0.06 0.46 6.81 37.01 0.25 0.71 16 26 C -0.15 -1.29 4.89 -26.82 -0.13 -1.42 16 27 C -0.11 -1.16 3.15 -88.68 -0.28 -1.44 16 28 H 0.10 1.12 7.81 -51.93 -0.41 0.71 16 29 C -0.24 -6.12 8.62 -38.48 -0.33 -6.45 16 30 H 0.28 6.18 8.29 -40.82 -0.34 5.84 16 31 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 32 H 0.12 2.62 8.06 -52.49 -0.42 2.20 16 33 H 0.41 6.26 8.68 -40.82 -0.35 5.91 16 34 H 0.07 0.75 7.46 -51.93 -0.39 0.36 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.39 8.11 -51.93 -0.42 -0.03 16 40 H 0.08 0.72 7.23 -51.93 -0.38 0.34 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.13 3.11 6.21 -52.48 -0.33 2.79 16 LS Contribution 343.37 15.07 5.17 5.17 Total: -1.00 -32.84 343.37 -9.38 -42.21 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -5.60 Total: 10.38 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -3.21 Total: -3.21 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 0.45 Total: -45.61 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -1.16 Total: -21.46 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.51 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.84 -9.38 -42.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577311641.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.323 kcal (2) G-P(sol) polarization free energy of solvation -32.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds